Slicer  5.3
Slicer is a multi-platform, free and open source software package for visualization and medical image computing
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vtkMRMLGlyphableVolumeSliceDisplayNode Class Reference

MRML node to represent display properties for tractography. More...

#include <Libs/MRML/Core/vtkMRMLGlyphableVolumeSliceDisplayNode.h>

Inheritance diagram for vtkMRMLGlyphableVolumeSliceDisplayNode:
Inheritance graph
Collaboration diagram for vtkMRMLGlyphableVolumeSliceDisplayNode:
Collaboration graph

Public Types

enum  { colorModeSolid = 0, colorModeScalar = 1, colorModeFunctionOfScalar = 2, colorModeUseCellScalars = 3 }
 Display Information: Geometry to display (not mutually exclusive) More...
typedef vtkMRMLModelDisplayNode Superclass
- Public Types inherited from vtkMRMLModelDisplayNode
enum  SliceDisplayModeType { SliceDisplayIntersection, SliceDisplayProjection, SliceDisplayDistanceEncodedProjection, SliceDisplayMode_Last }
typedef vtkMRMLDisplayNode Superclass
- Public Types inherited from vtkMRMLDisplayNode
enum  { MenuEvent = 16100 }
enum  InterpolationType { FlatInterpolation = 0, GouraudInterpolation, PhongInterpolation, PBRInterpolation }
enum  RepresentationType { PointsRepresentation = 0, WireframeRepresentation, SurfaceRepresentation }
enum  ScalarRangeFlagType {
  UseManualScalarRange = 0, UseDataScalarRange, UseColorNodeScalarRange, UseDataTypeScalarRange,
enum  ShowModeType { ShowDefault = 0, ShowIgnore, ShowMode_Last }
 Enumerated values for ShowMode. More...
typedef vtkMRMLNode Superclass
- Public Types inherited from vtkMRMLNode
enum  {
  HierarchyModifiedEvent = 16000, IDChangedEvent = 16001, ReferenceAddedEvent, ReferenceModifiedEvent,
  ReferenceRemovedEvent, ReferencedNodeModifiedEvent
typedef vtkObject Superclass

Public Member Functions

void Copy (vtkMRMLNode *node) override
Copy the node's attributes to this object More...
vtkMRMLNodeCreateNodeInstance () override
 MRMLNode methods. More...
virtual const char * GetClassName ()
virtual int GetColorMode ()
 Display Information: ColorMode for ALL nodes. More...
const char * GetNodeTagName () override
Get node XML tag name (like Volume, UnstructuredGrid) More...
vtkPolyData * GetOutputMesh () override
vtkAlgorithmOutput * GetOutputMeshConnection () override
virtual vtkAlgorithmOutput * GetSliceImagePort ()
virtual vtkPolyData * GetSliceOutputPolyData ()
virtual vtkAlgorithmOutput * GetSliceOutputPort ()
virtual int IsA (const char *type)
void PrintSelf (ostream &os, vtkIndent indent) override
void ProcessMRMLEvents (vtkObject *, unsigned long, void *) override
alternative method to propagate events generated in Display nodes More...
void ReadXMLAttributes (const char **atts) override
Read node attributes from XML (MRML) file More...
virtual void SetColorMode (int)
void SetColorModeToFunctionOfScalar ()
void SetColorModeToScalar ()
Color according to the tensors using various scalar invariants. More...
void SetColorModeToSolid ()
Color by solid color (for example the whole fiber bundle red. blue, etc.) More...
void SetColorModeToUseCellScalars ()
virtual void SetSliceGlyphRotationMatrix (vtkMatrix4x4 *matrix)
Set slice to IJK transformation More...
virtual void SetSliceImagePort (vtkAlgorithmOutput *imagePort)
virtual void SetSlicePositionMatrix (vtkMatrix4x4 *matrix)
Set slice to RAS transformation More...
void UpdateAssignedAttribute () override
Update the pipeline based on this node attributes More...
void UpdateReferenceID (const char *oldID, const char *newID) override
 Update the stored reference to another node in the scene. More...
void UpdateReferences () override
void UpdateScene (vtkMRMLScene *scene) override
Finds the storage node and read the data More...
void WriteXML (ostream &of, int indent) override
Write this node's information to a MRML file in XML format. More...
- Public Member Functions inherited from vtkMRMLModelDisplayNode
vtkMRMLNodeCreateNodeInstance () override
 Create instance of the default node. Like New only virtual. More...
virtual vtkDataArray * GetActiveScalarArray () override
 Return the current active scalar array (based on active scalar name and location) More...
virtual double * GetBackfaceColorHSVOffset ()
virtual void GetBackfaceColorHSVOffset (double &, double &, double &)
virtual void GetBackfaceColorHSVOffset (double [3])
virtual vtkMRMLColorNodeGetDistanceEncodedProjectionColorNode ()
virtual const char * GetDistanceEncodedProjectionColorNodeID ()
virtual vtkPointSet * GetInputMesh ()
virtual vtkAlgorithmOutput * GetInputMeshConnection ()
virtual vtkPolyData * GetInputPolyData ()
virtual vtkAlgorithmOutput * GetInputPolyDataConnection ()
virtual vtkUnstructuredGrid * GetInputUnstructuredGrid ()
const char * GetNodeTagName () override
 Get node XML tag name (like Volume, Model) More...
virtual vtkPolyData * GetOutputPolyData ()
virtual vtkAlgorithmOutput * GetOutputPolyDataConnection ()
virtual vtkUnstructuredGrid * GetOutputUnstructuredGrid ()
virtual vtkDataSet * GetScalarDataSet () override
virtual int GetSliceDisplayMode ()
virtual bool GetThresholdEnabled ()
double GetThresholdMax ()
double GetThresholdMin ()
void GetThresholdRange (double range[2])
double * GetThresholdRange ()
void PrintSelf (ostream &os, vtkIndent indent) override
void ReadXMLAttributes (const char **atts) override
Read node attributes from XML file More...
void SetActiveAttributeLocation (int location) override
void SetActiveScalarName (const char *scalarName) override
virtual void SetAndObserveDistanceEncodedProjectionColorNodeID (const char *colorNodeID)
virtual void SetBackfaceColorHSVOffset (double [3])
virtual void SetBackfaceColorHSVOffset (double, double, double)
virtual void SetInputMeshConnection (vtkAlgorithmOutput *meshConnection)
virtual void SetInputPolyDataConnection (vtkAlgorithmOutput *polyDataConnection)
virtual void SetSliceDisplayMode (int)
void SetSliceDisplayModeToDistanceEncodedProjection ()
void SetSliceDisplayModeToIntersection ()
void SetSliceDisplayModeToProjection ()
void SetThresholdEnabled (bool enabled)
void SetThresholdRange (double min, double max)
void SetThresholdRange (double range[2])
virtual void ThresholdEnabledOff ()
virtual void ThresholdEnabledOn ()
 vtkMRMLCopyContentMacro (vtkMRMLModelDisplayNode)
void WriteXML (ostream &of, int indent) override
Write this node's information to a MRML file in XML format. More...
- Public Member Functions inherited from vtkMRMLDisplayNode
void AddViewNodeID (const char *viewNodeID)
void AutoScalarRangeOff ()
void AutoScalarRangeOn ()
virtual void ClippingOff ()
virtual void ClippingOn ()
virtual void EdgeVisibilityOff ()
virtual void EdgeVisibilityOn ()
virtual void FolderDisplayOverrideAllowedOff ()
virtual void FolderDisplayOverrideAllowedOn ()
virtual int GetActiveAttributeLocation ()
const char * GetActiveAttributeLocationAsString ()
virtual char * GetActiveScalarName ()
virtual double GetAmbient ()
int GetAutoScalarRange ()
virtual int GetClipping ()
virtual void GetColor (double [3])
virtual void GetColor (double &, double &, double &)
virtual double * GetColor ()
virtual vtkMRMLColorNodeGetColorNode ()
virtual char * GetColorNodeID ()
virtual double GetDiffuse ()
virtual vtkMRMLDisplayableNodeGetDisplayableNode ()
virtual double * GetEdgeColor ()
virtual void GetEdgeColor (double &, double &, double &)
virtual void GetEdgeColor (double [3])
virtual int GetEdgeVisibility ()
virtual bool GetFolderDisplayOverrideAllowed ()
virtual int GetInterpolateTexture ()
virtual int GetInterpolation ()
virtual int GetLighting ()
virtual double GetLineWidth ()
const char * GetNthViewNodeID (unsigned int index)
int GetNumberOfViewNodeIDs () const
virtual double GetOpacity ()
virtual double GetPointSize ()
virtual double GetPower ()
virtual int GetRepresentation ()
virtual double * GetScalarRange ()
virtual void GetScalarRange (double &, double &)
virtual void GetScalarRange (double [2])
virtual int GetScalarRangeFlag ()
const char * GetScalarRangeFlagAsString ()
virtual int GetScalarVisibility ()
virtual double GetSelectedAmbient ()
virtual double * GetSelectedColor ()
virtual void GetSelectedColor (double &, double &, double &)
virtual void GetSelectedColor (double [3])
virtual double GetSelectedSpecular ()
virtual int GetShading ()
virtual double GetSliceIntersectionOpacity ()
virtual int GetSliceIntersectionThickness ()
int GetSliceIntersectionVisibility ()
virtual double GetSpecular ()
virtual int GetTensorVisibility ()
virtual vtkAlgorithmOutput * GetTextureImageDataConnection ()
virtual int GetVectorVisibility ()
std::vector< std::string > GetViewNodeIDs () const
virtual int GetVisibility ()
virtual bool GetVisibility (const char *viewNodeID)
virtual int GetVisibility2D ()
virtual int GetVisibility3D ()
virtual void InterpolateTextureOff ()
virtual void InterpolateTextureOn ()
bool IsDisplayableInView (const char *viewNodeID) const
bool IsViewNodeIDPresent (const char *viewNodeID) const
virtual void LightingOff ()
virtual void LightingOn ()
void PrintSelf (ostream &os, vtkIndent indent) override
void RemoveAllViewNodeIDs ()
void RemoveViewNodeID (char *viewNodeID)
virtual void ScalarVisibilityOff ()
virtual void ScalarVisibilityOn ()
void SetActiveAttributeLocationFromString (const char *str)
virtual void SetActiveScalar (const char *scalarName, int location)
virtual void SetAmbient (double)
virtual void SetAndObserveColorNodeID (const char *ColorNodeID)
void SetAndObserveColorNodeID (const std::string &ColorNodeID)
void SetAutoScalarRange (int b)
virtual void SetClipping (int)
virtual void SetColor (double, double, double)
virtual void SetColor (double [3])
virtual void SetDiffuse (double)
void SetDisplayableOnlyInView (const char *viewNodeID)
virtual void SetEdgeColor (double, double, double)
virtual void SetEdgeColor (double [3])
virtual void SetEdgeVisibility (int)
virtual void SetFolderDisplayOverrideAllowed (bool)
virtual void SetInterpolateTexture (int)
virtual void SetInterpolation (int)
virtual void SetLighting (int)
virtual void SetLineWidth (double)
virtual void SetOpacity (double)
virtual void SetPointSize (double)
virtual void SetPower (double)
virtual void SetRepresentation (int)
virtual void SetScalarRange (double, double)
void SetScalarRange (double [2])
virtual void SetScalarRangeFlag (int flag)
void SetScalarRangeFlagFromString (const char *str)
virtual void SetScalarVisibility (int)
void SetSceneReferences () override
 Mark the color and views nodes as references. More...
virtual void SetSelectedAmbient (double)
virtual void SetSelectedColor (double, double, double)
virtual void SetSelectedColor (double [3])
virtual void SetSelectedSpecular (double)
virtual void SetShading (int)
virtual void SetSliceIntersectionOpacity (double)
virtual void SetSliceIntersectionThickness (int)
void SetSliceIntersectionVisibility (int on)
virtual void SetSpecular (double)
virtual void SetTensorVisibility (int)
virtual void SetTextureImageDataConnection (vtkAlgorithmOutput *ImageDataConnection)
virtual void SetVectorVisibility (int)
void SetViewNodeIDs (const std::vector< std::string > &viewNodeIDs)
virtual void SetVisibility (int)
virtual void SetVisibility2D (int)
virtual void SetVisibility3D (int)
void SliceIntersectionVisibilityOff ()
void SliceIntersectionVisibilityOn ()
virtual void TensorVisibilityOff ()
virtual void TensorVisibilityOn ()
virtual void UpdateScalarRange ()
virtual void VectorVisibilityOff ()
virtual void VectorVisibilityOn ()
virtual void Visibility2DOff ()
virtual void Visibility2DOn ()
virtual void Visibility3DOff ()
virtual void Visibility3DOn ()
virtual void VisibilityOff ()
virtual void VisibilityOn ()
 vtkMRMLCopyContentMacro (vtkMRMLDisplayNode)
virtual void SetMetallic (double)
virtual double GetMetallic ()
virtual void SetRoughness (double)
virtual double GetRoughness ()
virtual void SetFrontfaceCulling (int)
virtual int GetFrontfaceCulling ()
virtual void FrontfaceCullingOn ()
virtual void FrontfaceCullingOff ()
virtual void SetBackfaceCulling (int)
virtual int GetBackfaceCulling ()
virtual void BackfaceCullingOn ()
virtual void BackfaceCullingOff ()
virtual void SetShowMode (int)
virtual int GetShowMode ()
bool IsShowModeDefault ()
- Public Member Functions inherited from vtkMRMLNode
vtkMRMLNodeAddAndObserveNodeReferenceID (const char *referenceRole, const char *referencedNodeID, vtkIntArray *events=nullptr)
 Add and observe a reference node from this node for a specific referenceRole. More...
vtkMRMLNodeAddNodeReferenceID (const char *referenceRole, const char *referencedNodeID)
 Convenience method that adds a referencedNodeID at the end of the list. More...
void AddNodeReferenceRole (const char *referenceRole, const char *mrmlAttributeName=nullptr, vtkIntArray *events=nullptr)
 Add a referenceRole. More...
virtual void AddToSceneOff ()
virtual void AddToSceneOn ()
virtual void CopyContent (vtkMRMLNode *node, bool deepCopy=true)
 Copy node contents from another node of the same type. Does not copy node ID, Scene, Name, SingletonTag, HideFromEditors, AddToScene, UndoEnabled, and node references. If deepCopy is set to false then a shallow copy of bulk data (such as image or mesh data) could be made; copying may be faster but the node may share some data with the source node instead of creating an independent copy. More...
virtual void CopyReferences (vtkMRMLNode *node)
 Copy the references of the node into this. More...
void CopyWithScene (vtkMRMLNode *node)
 Copy everything (including Scene and ID) from another node of the same type. More...
void DisableModifiedEventOff ()
void DisableModifiedEventOn ()
virtual int EndModify (int previousDisableModifiedEventState)
 End modifying the node. More...
virtual int GetAddToScene ()
 node added to MRML scene. More...
const char * GetAttribute (const char *name)
 Get value of a name value pair attribute. More...
std::vector< std::string > GetAttributeNames ()
 Get all attribute names. More...
void GetAttributeNames (vtkStringArray *attributeNames)
 Get all attribute names. Python-wrappable version. More...
virtual vtkIntArray * GetContentModifiedEvents ()
int GetCustomModifiedEventPending (int eventId)
virtual char * GetDescription ()
virtual int GetDisableModifiedEvent ()
 Turn on/off generating InvokeEvent for set macros. More...
virtual int GetHideFromEditors ()
 Describes if the node is hidden. More...
virtual char * GetID ()
 ID use by other nodes to reference this node in XML. More...
virtual int GetInMRMLCallbackFlag ()
 Flags to avoid event loops. More...
virtual int GetModifiedEventPending ()
virtual char * GetName ()
vtkMRMLNodeGetNodeReference (const char *referenceRole)
const char * GetNodeReferenceID (const char *referenceRole)
 Utility function that returns the first node id for a specific referenceRole. More...
void GetNodeReferenceIDs (const char *referenceRole, std::vector< const char *> &referencedNodeIDs)
 Return a list of the referenced node IDs. More...
void GetNodeReferenceRoles (std::vector< std::string > &roles)
void GetNodeReferences (const char *referenceRole, std::vector< vtkMRMLNode *> &nodes)
 Return a list of the referenced nodes. More...
vtkMRMLNodeGetNthNodeReference (const char *referenceRole, int n)
 Get referenced MRML node for a specific referenceRole. More...
const char * GetNthNodeReferenceID (const char *referenceRole, int n)
 Return the string of the Nth node ID for a specific reference role. More...
const char * GetNthNodeReferenceRole (int n)
int GetNumberOfNodeReferenceRoles ()
int GetNumberOfNodeReferences (const char *referenceRole)
 Return the number of node IDs for a specific reference role (and nodes as they always have the same size). More...
virtual int GetSaveWithScene ()
 Save node with MRML scene. More...
virtual vtkMRMLSceneGetScene ()
 Get the scene this node has been added to. More...
virtual int GetSelectable ()
 Describes if the node is selectable. More...
virtual int GetSelected ()
 Get/Set for Selected. More...
virtual char * GetSingletonTag ()
virtual const char * GetTypeDisplayName ()
virtual bool GetUndoEnabled ()
virtual bool HasCopyContent () const
 Returns true if the class supports deep and shallow copying node content. More...
bool HasNodeReferenceID (const char *referenceRole, const char *referencedNodeID)
 Return true if referencedNodeID is in the node ID list for a specific referenceRole. More...
virtual void HideFromEditorsOff ()
virtual void HideFromEditorsOn ()
virtual void InvokeCustomModifiedEvent (int eventId, void *callData=nullptr)
 This method allows the node to compress events. More...
virtual int InvokePendingModifiedEvent ()
 Invokes any modified events that are pending. More...
bool IsSingleton ()
void Modified () override
 Customized version of Modified() allowing to compress vtkCommand::ModifiedEvent. More...
virtual void OnNodeAddedToScene ()
void PrintSelf (ostream &os, vtkIndent indent) override
virtual void ProcessChildNode (vtkMRMLNode *)
 Set dependencies between this node and a child node when parsing XML file. More...
void RemoveAttribute (const char *name)
 Remove attribute with the specified name. More...
void RemoveNodeReferenceIDs (const char *referenceRole)
 Remove all node IDs and associated nodes for a specific referenceRole. More...
void RemoveNthNodeReferenceID (const char *referenceRole, int n)
 Convenience method that removes the Nth node ID from the list. More...
virtual void Reset (vtkMRMLNode *defaultNode)
 Reset node attributes to the initial state as defined in the constructor or the passed default node. More...
virtual void SaveWithSceneOff ()
virtual void SaveWithSceneOn ()
virtual void SelectableOff ()
virtual void SelectableOn ()
virtual void SelectedOff ()
virtual void SelectedOn ()
virtual void SetAddToScene (int)
void SetAddToSceneNoModify (int value)
vtkMRMLNodeSetAndObserveNodeReferenceID (const char *referenceRole, const char *referencedNodeID, vtkIntArray *events=nullptr)
 Set and observe a reference node from this node for a specific referenceRole. More...
vtkMRMLNodeSetAndObserveNthNodeReferenceID (const char *referenceRole, int n, const char *referencedNodeID, vtkIntArray *events=nullptr)
 Set and observe the Nth node ID for a specific reference role. More...
void SetAttribute (const char *name, const char *value)
 Set a name value pair attribute. More...
virtual void SetDescription (const char *)
 Text description of this node, to be set by the user. More...
void SetDisableModifiedEvent (int onOff)
virtual void SetHideFromEditors (int)
void SetInMRMLCallbackFlag (int flag)
virtual void SetName (const char *)
 Name of this node, to be set by the user. More...
vtkMRMLNodeSetNodeReferenceID (const char *referenceRole, const char *referencedNodeID)
 Set a reference to a node with specified nodeID from this node for a specific referenceRole. More...
vtkMRMLNodeSetNthNodeReferenceID (const char *referenceRole, int n, const char *referencedNodeID)
 Set a N-th reference from this node with specified referencedNodeID for a specific referenceRole. More...
virtual void SetSaveWithScene (int)
virtual void SetScene (vtkMRMLScene *scene)
 This method is for internal use only. Use AddNode method of vtkMRMLScene to add a node to the scene. More...
virtual void SetSelectable (int)
virtual void SetSelected (int)
void SetSingletonOff ()
void SetSingletonOn ()
virtual void SetSingletonTag (const char *)
 Tag that make this node a singleton in the scene. More...
virtual void SetUndoEnabled (bool)
virtual int StartModify ()
 Start modifying the node. Disable Modify events. More...
virtual void UndoEnabledOff ()
virtual void UndoEnabledOn ()
const char * URLDecodeString (const char *inString)
 Decode a URL string. More...
const char * URLEncodeString (const char *inString)
 Encode a URL string. More...
virtual void WriteNodeBodyXML (ostream &of, int indent)
 Write this node's body to a MRML file in XML format. More...
std::string XMLAttributeDecodeString (const std::string &inString)
 Decode an XML attribute string. More...
std::string XMLAttributeEncodeString (const std::string &inString)
 Encode an XML attribute string (replaces special characters by code sequences) More...

Static Public Member Functions

static int IsTypeOf (const char *type)
static vtkMRMLGlyphableVolumeSliceDisplayNodeNew ()
static vtkMRMLGlyphableVolumeSliceDisplayNodeSafeDownCast (vtkObject *o)
- Static Public Member Functions inherited from vtkMRMLModelDisplayNode
static const char * GetSliceDisplayModeAsString (int id)
 Convert between slice display mode ID and name. More...
static int GetSliceDisplayModeFromString (const char *name)
static int IsTypeOf (const char *type)
static vtkMRMLModelDisplayNodeNew ()
static vtkMRMLModelDisplayNodeSafeDownCast (vtkObject *o)
- Static Public Member Functions inherited from vtkMRMLDisplayNode
static const char * GetAttributeLocationAsString (int id)
 Converts attribute location (point or cell data) to string. More...
static int GetAttributeLocationFromString (const char *name)
 Gets attribute location (point or cell data) from string. More...
static const char * GetScalarRangeFlagTypeAsString (int flag)
static int GetScalarRangeFlagTypeFromString (const char *name)
 Gets scalar range flag type from string. More...
static std::string GetTextPropertyAsString (vtkTextProperty *property)
static int IsTypeOf (const char *type)
static vtkMRMLDisplayNodeSafeDownCast (vtkObject *o)
static void UpdateTextPropertyFromString (std::string inputString, vtkTextProperty *property)
static const char * GetShowModeAsString (int flag)
static int GetShowModeFromString (const char *name)
- Static Public Member Functions inherited from vtkMRMLNode
static int IsTypeOf (const char *type)
static vtkMRMLNodeSafeDownCast (vtkObject *o)

Protected Member Functions

void operator= (const vtkMRMLGlyphableVolumeSliceDisplayNode &)
virtual void SetInputToPolyDataPipeline (vtkAlgorithmOutput *glyphPolyData)
 Ignore input polydata as it takes a volume slice as input. More...
 vtkMRMLGlyphableVolumeSliceDisplayNode ()
 Display Information: ColorMode for glyphs. More...
 vtkMRMLGlyphableVolumeSliceDisplayNode (const vtkMRMLGlyphableVolumeSliceDisplayNode &)
 ~vtkMRMLGlyphableVolumeSliceDisplayNode () override
- Protected Member Functions inherited from vtkMRMLModelDisplayNode
void operator= (const vtkMRMLModelDisplayNode &)
void ProcessMRMLEvents (vtkObject *caller, unsigned long event, void *callData) override
virtual void SetInputToMeshPipeline (vtkAlgorithmOutput *meshConnection)
 To be reimplemented in subclasses if the input of the pipeline changes. More...
 vtkMRMLModelDisplayNode ()
 vtkMRMLModelDisplayNode (const vtkMRMLModelDisplayNode &)
 ~vtkMRMLModelDisplayNode () override
- Protected Member Functions inherited from vtkMRMLDisplayNode
void operator= (const vtkMRMLDisplayNode &)
virtual void SetColorNodeInternal (vtkMRMLColorNode *newColorNode)
 vtkMRMLDisplayNode ()
 vtkMRMLDisplayNode (const vtkMRMLDisplayNode &)
 ~vtkMRMLDisplayNode () override
- Protected Member Functions inherited from vtkMRMLNode
virtual const char * GetMRMLAttributeNameFromReferenceRole (const char *refRole)
 Return the mrml attribute name (if found) associated with a reference role. Return 0 otherwise. More...
virtual const char * GetReferenceRoleFromMRMLAttributeName (const char *attName)
 Return the reference role (if found) associated with the attribute name found in a MRML scene file. Return 0 otherwise. More...
virtual char * GetTempURLString ()
void GetUpdatedReferencedNodeEventList (int &oldReferencedNodeUseCount, int &newReferencedNodeUseCount, vtkIntArray *oldConsolidatedEventList, vtkIntArray *newConsolidatedEventList, vtkMRMLNode *oldReferencedNode, vtkMRMLNode *newReferencedNode, vtkMRMLNodeReference *referenceToIgnore, vtkIntArray *newEvents)
virtual void InvalidateNodeReferences ()
virtual bool IsReferenceRoleGeneric (const char *refRole)
 Return true if the reference role is generic (ends with '/') or false otherwise. More...
virtual void OnNodeReferenceAdded (vtkMRMLNodeReference *reference)
virtual void OnNodeReferenceModified (vtkMRMLNodeReference *reference)
 Called when a referenced node pointer is modified. More...
virtual void OnNodeReferenceRemoved (vtkMRMLNodeReference *reference)
 Called when a referenced node pointer is removed (set to nullptr). More...
void operator= (const vtkMRMLNode &)
void ParseReferencesAttribute (const char *attValue, std::set< std::string > &references)
void RemoveInvalidReferences (const std::set< std::string > &validNodeIDs)
virtual void SetTempURLString (const char *)
 Get/Set the string used to manage encoding/decoding of strings/URLs with special characters. More...
vtkMRMLNodeUpdateNodeReferenceEventObserver (vtkMRMLNode *oldReferencedNode, vtkMRMLNode *newReferencedNode, vtkIntArray *newEvents, vtkMRMLNodeReference *referenceToIgnore)
virtual void UpdateNodeReferences (const char *referenceRole=nullptr)
virtual void UpdateNthNodeReference (const char *referenceRole, int n)
 vtkMRMLNode ()
 vtkMRMLNode (const vtkMRMLNode &)
 ~vtkMRMLNode () override
 critical to have a virtual destructor! More...

Protected Attributes

int ColorMode
 Enumerated. More...
vtkAlgorithmOutput * SliceImagePort
vtkMatrix4x4 * SliceToXYMatrix
vtkTransform * SliceToXYTransform
vtkTransformPolyDataFilter * SliceToXYTransformer
- Protected Attributes inherited from vtkMRMLModelDisplayNode
vtkAssignAttribute * AssignAttribute
double BackfaceColorHSVOffset [3]
vtkGeometryFilter * ConvertToPolyDataFilter
vtkPassThrough * PassThrough
int SliceDisplayMode
bool ThresholdEnabled
vtkThreshold * ThresholdFilter
double ThresholdRangeTemp [2]
 Temporary variable to allow GetThresholdRange() method to return threshold range as a pointer. More...
- Protected Attributes inherited from vtkMRMLDisplayNode
int ActiveAttributeLocation
char * ActiveScalarName
double Ambient
int BackfaceCulling
int Clipping
double Color [3]
char * ColorNodeID
double Diffuse
double EdgeColor [3]
int EdgeVisibility
bool FolderDisplayOverrideAllowed
int FrontfaceCulling
int InterpolateTexture
int Interpolation
vtkWeakPointer< vtkMRMLDisplayableNodeLastFoundDisplayableNode
 Cached value of last found displayable node (it is expensive to determine it) More...
int Lighting
double LineWidth
double Metallic
double Opacity
double PointSize
double Power
int Representation
double Roughness
double ScalarRange [2]
int ScalarRangeFlag
int ScalarVisibility
double SelectedAmbient
double SelectedColor [3]
double SelectedSpecular
int Shading
int ShowMode
double SliceIntersectionOpacity
int SliceIntersectionThickness
double Specular
int TensorVisibility
vtkAlgorithmOutput * TextureImageDataConnection
int VectorVisibility
std::vector< std::string > ViewNodeIDs
int Visibility
int Visibility2D
int Visibility3D
- Protected Attributes inherited from vtkMRMLNode
int AddToScene {1}
AttributesType Attributes
vtkIntArray * ContentModifiedEvents
char * Description {nullptr}
int HideFromEditors {0}
char * ID {nullptr}
int InMRMLCallbackFlag {0}
Flag to avoid event loops More...
vtkCallbackCommand * MRMLCallbackCommand
 Holders for MRML callbacks. More...
char * Name {nullptr}
NodeReferenceEventsType NodeReferenceEvents
std::map< std::string, std::string > NodeReferenceMRMLAttributeNames
NodeReferencesType NodeReferences
int SaveWithScene {true}
vtkWeakPointer< vtkMRMLSceneScene
int Selectable {1}
int Selected {0}
bool UndoEnabled {false}

Additional Inherited Members

- Protected Types inherited from vtkMRMLNode
typedef std::map< std::string, std::string > AttributesType
typedef std::map< std::string, vtkSmartPointer< vtkIntArray > > NodeReferenceEventsType
typedef std::vector< vtkSmartPointer< vtkMRMLNodeReference > > NodeReferenceListType
typedef std::map< std::string, NodeReferenceListTypeNodeReferencesType
- Static Protected Member Functions inherited from vtkMRMLDisplayNode
static void GetColorFromString (const std::string &colorString, double color[4])
- Static Protected Member Functions inherited from vtkMRMLNode
static void MRMLCallback (vtkObject *caller, unsigned long eid, void *clientData, void *callData)

Detailed Description

MRML node to represent display properties for tractography.

vtkMRMLGlyphableVolumeSliceDisplayNode nodes store display properties of trajectories from tractography in diffusion MRI data, including color type (by bundle, by fiber, or by scalar invariants), display on/off for tensor glyphs and display of trajectory as a line or tube.

Definition at line 35 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

Member Typedef Documentation

◆ Superclass

Definition at line 39 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

Member Enumeration Documentation

◆ anonymous enum

anonymous enum

Display Information: Geometry to display (not mutually exclusive)

Display Information: Color Mode 0) solid color by group 1) color by scalar invariant 2) color by avg scalar invariant 3) color by other


Definition at line 136 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

Constructor & Destructor Documentation

◆ vtkMRMLGlyphableVolumeSliceDisplayNode() [1/2]

vtkMRMLGlyphableVolumeSliceDisplayNode::vtkMRMLGlyphableVolumeSliceDisplayNode ( )

Display Information: ColorMode for glyphs.

MRML nodes that are observed

◆ ~vtkMRMLGlyphableVolumeSliceDisplayNode()

vtkMRMLGlyphableVolumeSliceDisplayNode::~vtkMRMLGlyphableVolumeSliceDisplayNode ( )

◆ vtkMRMLGlyphableVolumeSliceDisplayNode() [2/2]

vtkMRMLGlyphableVolumeSliceDisplayNode::vtkMRMLGlyphableVolumeSliceDisplayNode ( const vtkMRMLGlyphableVolumeSliceDisplayNode )

Member Function Documentation

◆ Copy()

void vtkMRMLGlyphableVolumeSliceDisplayNode::Copy ( vtkMRMLNode node)

Copy the node's attributes to this object

Reimplemented from vtkMRMLNode.

◆ CreateNodeInstance()

vtkMRMLNode* vtkMRMLGlyphableVolumeSliceDisplayNode::CreateNodeInstance ( )

MRMLNode methods.

Implements vtkMRMLNode.

◆ GetClassName()

virtual const char* vtkMRMLGlyphableVolumeSliceDisplayNode::GetClassName ( )

◆ GetColorMode()

virtual int vtkMRMLGlyphableVolumeSliceDisplayNode::GetColorMode ( )

Display Information: ColorMode for ALL nodes.

Description: Color mode for glyphs. The color modes are mutually exclusive.

◆ GetNodeTagName()

const char* vtkMRMLGlyphableVolumeSliceDisplayNode::GetNodeTagName ( )

Get node XML tag name (like Volume, UnstructuredGrid)

Implements vtkMRMLNode.

Definition at line 63 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

◆ GetOutputMesh()

vtkPolyData* vtkMRMLGlyphableVolumeSliceDisplayNode::GetOutputMesh ( )

Return the glyph polydata for the input slice image. This is the polydata to use in a 3D view. Reimplemented to by-pass the check on the input polydata.

See also
GetSliceOutputPolyData(), GetOutputPolyDataConnection()

Reimplemented from vtkMRMLModelDisplayNode.

◆ GetOutputMeshConnection()

vtkAlgorithmOutput* vtkMRMLGlyphableVolumeSliceDisplayNode::GetOutputMeshConnection ( )

Return the output of the glyph producer for the input image data. The output is connected as the input of the slice transform. It must be reimplemented in subclasses.

See also
GetOutputPolyData(), GetSliceOutputPort()

Reimplemented from vtkMRMLModelDisplayNode.

◆ GetSliceImagePort()

virtual vtkAlgorithmOutput* vtkMRMLGlyphableVolumeSliceDisplayNode::GetSliceImagePort ( )

◆ GetSliceOutputPolyData()

virtual vtkPolyData* vtkMRMLGlyphableVolumeSliceDisplayNode::GetSliceOutputPolyData ( )

Return the glyph polyData transformed to slice XY. This is the polydata to use in a 2D slice.

See also
GetOutputPolyData(), GetSliceOutputPort()

◆ GetSliceOutputPort()

virtual vtkAlgorithmOutput* vtkMRMLGlyphableVolumeSliceDisplayNode::GetSliceOutputPort ( )

Return the glyph output transformed to slice XY. Return the output of the glyph producer for the entire volume.

See also
GetSliceOutputPolyData(), GetOutputPolyDataConnection()

◆ IsA()

virtual int vtkMRMLGlyphableVolumeSliceDisplayNode::IsA ( const char *  type)

◆ IsTypeOf()

static int vtkMRMLGlyphableVolumeSliceDisplayNode::IsTypeOf ( const char *  type)

◆ New()

static vtkMRMLGlyphableVolumeSliceDisplayNode* vtkMRMLGlyphableVolumeSliceDisplayNode::New ( )

◆ operator=()

void vtkMRMLGlyphableVolumeSliceDisplayNode::operator= ( const vtkMRMLGlyphableVolumeSliceDisplayNode )

◆ PrintSelf()

void vtkMRMLGlyphableVolumeSliceDisplayNode::PrintSelf ( ostream &  os,
vtkIndent  indent 

◆ ProcessMRMLEvents()

void vtkMRMLGlyphableVolumeSliceDisplayNode::ProcessMRMLEvents ( vtkObject *  ,
unsigned  long,
void *   

alternative method to propagate events generated in Display nodes

Reimplemented from vtkMRMLDisplayNode.

◆ ReadXMLAttributes()

void vtkMRMLGlyphableVolumeSliceDisplayNode::ReadXMLAttributes ( const char **  atts)

Read node attributes from XML (MRML) file

Reimplemented from vtkMRMLDisplayNode.

◆ SafeDownCast()

static vtkMRMLGlyphableVolumeSliceDisplayNode* vtkMRMLGlyphableVolumeSliceDisplayNode::SafeDownCast ( vtkObject *  o)

◆ SetColorMode()

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::SetColorMode ( int  )

◆ SetColorModeToFunctionOfScalar()

void vtkMRMLGlyphableVolumeSliceDisplayNode::SetColorModeToFunctionOfScalar ( )

Color according to the tensors using a function of scalar invariants along the tract. This enables coloring by average FA, for example.

Definition at line 168 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

◆ SetColorModeToScalar()

void vtkMRMLGlyphableVolumeSliceDisplayNode::SetColorModeToScalar ( )

Color according to the tensors using various scalar invariants.

Definition at line 161 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

◆ SetColorModeToSolid()

void vtkMRMLGlyphableVolumeSliceDisplayNode::SetColorModeToSolid ( )

Color by solid color (for example the whole fiber bundle red. blue, etc.)

Definition at line 155 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

◆ SetColorModeToUseCellScalars()

void vtkMRMLGlyphableVolumeSliceDisplayNode::SetColorModeToUseCellScalars ( )

Use to color by the active cell scalars. This is intended to support external processing of fibers, for example to label each with the distance of that fiber from an fMRI activation. Then by making that information the active cell scalar field, this will allow coloring by that information. TO DO: make sure this information can be saved with the tract, save name of active scalar field if needed.

Definition at line 179 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

◆ SetInputToPolyDataPipeline()

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::SetInputToPolyDataPipeline ( vtkAlgorithmOutput *  glyphPolyData)

Ignore input polydata as it takes a volume slice as input.

◆ SetSliceGlyphRotationMatrix()

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::SetSliceGlyphRotationMatrix ( vtkMatrix4x4 *  matrix)

Set slice to IJK transformation

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

◆ SetSliceImagePort()

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::SetSliceImagePort ( vtkAlgorithmOutput *  imagePort)

Set imageData of a volume slice. This is used as the input of the display pipeline instead of SetInputPolyData().

See also
GetOutputPolyData(), SetInputPolyData()

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

◆ SetSlicePositionMatrix()

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::SetSlicePositionMatrix ( vtkMatrix4x4 *  matrix)

Set slice to RAS transformation

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

◆ UpdateAssignedAttribute()

void vtkMRMLGlyphableVolumeSliceDisplayNode::UpdateAssignedAttribute ( )

Update the pipeline based on this node attributes

Reimplemented from vtkMRMLModelDisplayNode.

◆ UpdateReferenceID()

void vtkMRMLGlyphableVolumeSliceDisplayNode::UpdateReferenceID ( const char *  oldID,
const char *  newID 

Update the stored reference to another node in the scene.

Reimplemented from vtkMRMLDisplayNode.

Definition at line 70 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

◆ UpdateReferences()

void vtkMRMLGlyphableVolumeSliceDisplayNode::UpdateReferences ( )

Updates this node if it depends on other nodes when the node is deleted in the scene

Reimplemented from vtkMRMLDisplayNode.

◆ UpdateScene()

void vtkMRMLGlyphableVolumeSliceDisplayNode::UpdateScene ( vtkMRMLScene scene)

Finds the storage node and read the data

Reimplemented from vtkMRMLDisplayNode.

◆ WriteXML()

void vtkMRMLGlyphableVolumeSliceDisplayNode::WriteXML ( ostream &  of,
int  indent 

Write this node's information to a MRML file in XML format.

Reimplemented from vtkMRMLDisplayNode.

Member Data Documentation

◆ ColorMode

int vtkMRMLGlyphableVolumeSliceDisplayNode::ColorMode


Definition at line 209 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

◆ SliceImagePort

vtkAlgorithmOutput* vtkMRMLGlyphableVolumeSliceDisplayNode::SliceImagePort

Definition at line 202 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

◆ SliceToXYMatrix

vtkMatrix4x4* vtkMRMLGlyphableVolumeSliceDisplayNode::SliceToXYMatrix

Definition at line 205 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

◆ SliceToXYTransform

vtkTransform* vtkMRMLGlyphableVolumeSliceDisplayNode::SliceToXYTransform

Definition at line 203 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

◆ SliceToXYTransformer

vtkTransformPolyDataFilter* vtkMRMLGlyphableVolumeSliceDisplayNode::SliceToXYTransformer

Definition at line 204 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

The documentation for this class was generated from the following file: