MRML node to represent display properties for tractography. More...

#include <Libs/MRML/Core/vtkMRMLDiffusionTensorVolumeSliceDisplayNode.h>

Inheritance diagram for vtkMRMLDiffusionTensorVolumeSliceDisplayNode:

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Collaboration diagram for vtkMRMLDiffusionTensorVolumeSliceDisplayNode:

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Public Types
enum	{ colorModeSolid = 0, colorModeScalar = 1, colorModeFunctionOfScalar = 2, colorModeUseCellScalars = 3 }
	Display Information: Geometry to display (not mutually exclusive) More...

typedef vtkMRMLGlyphableVolumeSliceDisplayNode	Superclass

Public Types inherited from vtkMRMLGlyphableVolumeSliceDisplayNode
enum	{ colorModeSolid = 0, colorModeScalar = 1, colorModeFunctionOfScalar = 2, colorModeUseCellScalars = 3 }
	Display Information: Geometry to display (not mutually exclusive) More...

typedef vtkMRMLModelDisplayNode	Superclass

Public Types inherited from vtkMRMLModelDisplayNode
enum	SliceDisplayModeType { SliceDisplayIntersection, SliceDisplayProjection, SliceDisplayDistanceEncodedProjection, SliceDisplayMode_Last }

typedef vtkMRMLDisplayNode	Superclass

Public Types inherited from vtkMRMLDisplayNode
enum	{ MenuEvent = 16100 }

enum	InterpolationType { FlatInterpolation = 0, GouraudInterpolation, PhongInterpolation }

enum	RepresentationType { PointsRepresentation = 0, WireframeRepresentation, SurfaceRepresentation }

enum	ScalarRangeFlagType { UseManualScalarRange = 0, UseDataScalarRange, UseColorNodeScalarRange, UseDataTypeScalarRange, UseDirectMapping, NUM_SCALAR_RANGE_FLAGS }

typedef vtkMRMLNode	Superclass

Public Types inherited from vtkMRMLNode
enum	{ HierarchyModifiedEvent = 16000, IDChangedEvent = 16001, ReferenceAddedEvent, ReferenceModifiedEvent, ReferenceRemovedEvent, ReferencedNodeModifiedEvent }

typedef vtkObject	Superclass

Public Member Functions
void	Copy (vtkMRMLNode *node) override
	Copy the node's attributes to this object More...

vtkMRMLNode *	CreateNodeInstance () override
	MRMLNode methods. More...

virtual const char *	GetClassName ()

vtkMRMLDiffusionTensorDisplayPropertiesNode *	GetDiffusionTensorDisplayPropertiesNode ()
	Display Information: ColorMode for glyphs. More...

virtual char *	GetDiffusionTensorDisplayPropertiesNodeID ()
	Get ID of diffusion tensor display MRML object for fiber glyph. More...

const char *	GetNodeTagName () override
	Get node XML tag name (like Volume, UnstructuredGrid) More...

vtkAlgorithmOutput *	GetOutputMeshConnection () override

virtual int	IsA (const char *type)

void	PrintSelf (ostream &os, vtkIndent indent) override

void	ProcessMRMLEvents (vtkObject , unsigned long, void ) override
	alternative method to propagate events generated in Display nodes More...

void	ReadXMLAttributes (const char **atts) override
	Read node attributes from XML (MRML) file More...

void	SetAndObserveDiffusionTensorDisplayPropertiesNodeID (const char *ID)
	Set diffusion tensor display MRML object for fiber glyph. More...

void	SetColorModeToFunctionOfScalar ()

void	SetColorModeToScalar ()
	Color according to the tensors using various scalar invariants. More...

void	SetColorModeToSolid ()
	Display Information: ColorMode for ALL nodes. More...

void	SetColorModeToUseCellScalars ()

void	SetSliceGlyphRotationMatrix (vtkMatrix4x4 *matrix) override
	Set slice to IJK transformation More...

void	SetSliceImagePort (vtkAlgorithmOutput *imagePort) override
	Set ImageData for a volume slice More...

void	SetSlicePositionMatrix (vtkMatrix4x4 *matrix) override
	Set slice to RAS transformation More...

void	UpdateAssignedAttribute () override
	Update the pipeline based on this node attributes More...

void	UpdateReferenceID (const char oldID, const char newID) override
	Update the stored reference to another node in the scene More...

void	UpdateReferences () override

void	UpdateScene (vtkMRMLScene *scene) override
	Finds the storage node and read the data More...

void	WriteXML (ostream &of, int indent) override
	Write this node's information to a MRML file in XML format. More...

Public Member Functions inherited from vtkMRMLGlyphableVolumeSliceDisplayNode
void	Copy (vtkMRMLNode *node) override
	Copy the node's attributes to this object More...

vtkMRMLNode *	CreateNodeInstance () override
	MRMLNode methods. More...

virtual int	GetColorMode ()
	Display Information: ColorMode for ALL nodes. More...

const char *	GetNodeTagName () override
	Get node XML tag name (like Volume, UnstructuredGrid) More...

vtkPolyData *	GetOutputMesh () override

vtkAlgorithmOutput *	GetOutputMeshConnection () override

virtual vtkAlgorithmOutput *	GetSliceImagePort ()

virtual vtkPolyData *	GetSliceOutputPolyData ()

virtual vtkAlgorithmOutput *	GetSliceOutputPort ()

void	PrintSelf (ostream &os, vtkIndent indent) override

void	ProcessMRMLEvents (vtkObject , unsigned long, void ) override
	alternative method to propagate events generated in Display nodes More...

void	ReadXMLAttributes (const char **atts) override
	Read node attributes from XML (MRML) file More...

virtual void	SetColorMode (int)

void	SetColorModeToFunctionOfScalar ()

void	SetColorModeToScalar ()
	Color according to the tensors using various scalar invariants. More...

void	SetColorModeToSolid ()
	Color by solid color (for example the whole fiber bundle red. blue, etc.) More...

void	SetColorModeToUseCellScalars ()

void	UpdateAssignedAttribute () override
	Update the pipeline based on this node attributes More...

void	UpdateReferenceID (const char oldID, const char newID) override
	Update the stored reference to another node in the scene. More...

void	UpdateReferences () override

void	UpdateScene (vtkMRMLScene *scene) override
	Finds the storage node and read the data More...

void	WriteXML (ostream &of, int indent) override
	Write this node's information to a MRML file in XML format. More...

Public Member Functions inherited from vtkMRMLModelDisplayNode
vtkMRMLNode *	CreateNodeInstance () override
	Create instance of the default node. Like New only virtual. More...

virtual vtkDataArray *	GetActiveScalarArray () override
	Return the current active scalar array (based on active scalar name and location) More...

virtual double *	GetBackfaceColorHSVOffset ()

virtual void	GetBackfaceColorHSVOffset (double &, double &, double &)

virtual void	GetBackfaceColorHSVOffset (double [3])

virtual vtkMRMLColorNode *	GetDistanceEncodedProjectionColorNode ()

virtual const char *	GetDistanceEncodedProjectionColorNodeID ()

virtual vtkPointSet *	GetInputMesh ()

virtual vtkAlgorithmOutput *	GetInputMeshConnection ()

virtual vtkPolyData *	GetInputPolyData ()

virtual vtkAlgorithmOutput *	GetInputPolyDataConnection ()

virtual vtkUnstructuredGrid *	GetInputUnstructuredGrid ()

const char *	GetNodeTagName () override
	Get node XML tag name (like Volume, Model) More...

virtual vtkPolyData *	GetOutputPolyData ()

virtual vtkAlgorithmOutput *	GetOutputPolyDataConnection ()

virtual vtkUnstructuredGrid *	GetOutputUnstructuredGrid ()

virtual vtkDataSet *	GetScalarDataSet () override

virtual int	GetSliceDisplayMode ()

virtual bool	GetThresholdEnabled ()

double	GetThresholdMax ()

double	GetThresholdMin ()

void	GetThresholdRange (double range[2])

double *	GetThresholdRange ()

void	PrintSelf (ostream &os, vtkIndent indent) override

void	ReadXMLAttributes (const char **atts) override
	Read node attributes from XML file More...

void	SetActiveAttributeLocation (int location) override

void	SetActiveScalarName (const char *scalarName) override

virtual void	SetAndObserveDistanceEncodedProjectionColorNodeID (const char *colorNodeID)

virtual void	SetBackfaceColorHSVOffset (double [3])

virtual void	SetBackfaceColorHSVOffset (double, double, double)

virtual void	SetInputMeshConnection (vtkAlgorithmOutput *meshConnection)

virtual void	SetInputPolyDataConnection (vtkAlgorithmOutput *polyDataConnection)

virtual void	SetSliceDisplayMode (int)

void	SetSliceDisplayModeToDistanceEncodedProjection ()

void	SetSliceDisplayModeToIntersection ()

void	SetSliceDisplayModeToProjection ()

void	SetThresholdEnabled (bool enabled)

void	SetThresholdRange (double min, double max)

void	SetThresholdRange (double range[2])

virtual void	ThresholdEnabledOff ()

virtual void	ThresholdEnabledOn ()

	vtkMRMLCopyContentMacro (vtkMRMLModelDisplayNode)

void	WriteXML (ostream &of, int indent) override
	Write this node's information to a MRML file in XML format. More...

Public Member Functions inherited from vtkMRMLDisplayNode
void	AddViewNodeID (const char *viewNodeID)

void	AutoScalarRangeOff ()

void	AutoScalarRangeOn ()

virtual void	ClippingOff ()

virtual void	ClippingOn ()

virtual void	EdgeVisibilityOff ()

virtual void	EdgeVisibilityOn ()

virtual void	FolderDisplayOverrideAllowedOff ()

virtual void	FolderDisplayOverrideAllowedOn ()

virtual int	GetActiveAttributeLocation ()

const char *	GetActiveAttributeLocationAsString ()

virtual char *	GetActiveScalarName ()

virtual double	GetAmbient ()

int	GetAutoScalarRange ()

virtual int	GetClipping ()

virtual void	GetColor (double [3])

virtual void	GetColor (double &, double &, double &)

virtual double *	GetColor ()

virtual vtkMRMLColorNode *	GetColorNode ()

virtual char *	GetColorNodeID ()

virtual double	GetDiffuse ()

virtual vtkMRMLDisplayableNode *	GetDisplayableNode ()

virtual double *	GetEdgeColor ()

virtual void	GetEdgeColor (double &, double &, double &)

virtual void	GetEdgeColor (double [3])

virtual int	GetEdgeVisibility ()

virtual bool	GetFolderDisplayOverrideAllowed ()

virtual int	GetInterpolateTexture ()

virtual int	GetInterpolation ()

virtual int	GetLighting ()

virtual double	GetLineWidth ()

const char *	GetNthViewNodeID (unsigned int index)

int	GetNumberOfViewNodeIDs () const

virtual double	GetOpacity ()

virtual double	GetPointSize ()

virtual double	GetPower ()

virtual int	GetRepresentation ()

virtual double *	GetScalarRange ()

virtual void	GetScalarRange (double &, double &)

virtual void	GetScalarRange (double [2])

virtual int	GetScalarRangeFlag ()

const char *	GetScalarRangeFlagAsString ()

virtual int	GetScalarVisibility ()

virtual double	GetSelectedAmbient ()

virtual double *	GetSelectedColor ()

virtual void	GetSelectedColor (double &, double &, double &)

virtual void	GetSelectedColor (double [3])

virtual double	GetSelectedSpecular ()

virtual int	GetShading ()

virtual double	GetSliceIntersectionOpacity ()

virtual int	GetSliceIntersectionThickness ()

int	GetSliceIntersectionVisibility ()

virtual double	GetSpecular ()

virtual int	GetTensorVisibility ()

virtual vtkAlgorithmOutput *	GetTextureImageDataConnection ()

virtual int	GetVectorVisibility ()

std::vector< std::string >	GetViewNodeIDs () const

virtual int	GetVisibility ()

virtual bool	GetVisibility (const char *viewNodeID)

virtual int	GetVisibility2D ()

virtual int	GetVisibility3D ()

virtual void	InterpolateTextureOff ()

virtual void	InterpolateTextureOn ()

bool	IsDisplayableInView (const char *viewNodeID) const

bool	IsViewNodeIDPresent (const char *viewNodeID) const

virtual void	LightingOff ()

virtual void	LightingOn ()

void	PrintSelf (ostream &os, vtkIndent indent) override

void	RemoveAllViewNodeIDs ()

void	RemoveViewNodeID (char *viewNodeID)

virtual void	ScalarVisibilityOff ()

virtual void	ScalarVisibilityOn ()

void	SetActiveAttributeLocationFromString (const char *str)

virtual void	SetActiveScalar (const char *scalarName, int location)

virtual void	SetAmbient (double)

virtual void	SetAndObserveColorNodeID (const char *ColorNodeID)

void	SetAndObserveColorNodeID (const std::string &ColorNodeID)

void	SetAutoScalarRange (int b)

virtual void	SetClipping (int)

virtual void	SetColor (double, double, double)

virtual void	SetColor (double [3])

virtual void	SetDiffuse (double)

void	SetDisplayableOnlyInView (const char *viewNodeID)

virtual void	SetEdgeColor (double, double, double)

virtual void	SetEdgeColor (double [3])

virtual void	SetEdgeVisibility (int)

virtual void	SetFolderDisplayOverrideAllowed (bool)

virtual void	SetInterpolateTexture (int)

virtual void	SetInterpolation (int)

virtual void	SetLighting (int)

virtual void	SetLineWidth (double)

virtual void	SetOpacity (double)

virtual void	SetPointSize (double)

virtual void	SetPower (double)

virtual void	SetRepresentation (int)

virtual void	SetScalarRange (double, double)

void	SetScalarRange (double [2])

virtual void	SetScalarRangeFlag (int flag)

void	SetScalarRangeFlagFromString (const char *str)

virtual void	SetScalarVisibility (int)

void	SetSceneReferences () override
	Mark the color and views nodes as references. More...

virtual void	SetSelectedAmbient (double)

virtual void	SetSelectedColor (double, double, double)

virtual void	SetSelectedColor (double [3])

virtual void	SetSelectedSpecular (double)

virtual void	SetShading (int)

virtual void	SetSliceIntersectionOpacity (double)

virtual void	SetSliceIntersectionThickness (int)

void	SetSliceIntersectionVisibility (int on)

virtual void	SetSpecular (double)

virtual void	SetTensorVisibility (int)

virtual void	SetTextureImageDataConnection (vtkAlgorithmOutput *ImageDataConnection)

virtual void	SetVectorVisibility (int)

void	SetViewNodeIDs (const std::vector< std::string > &viewNodeIDs)

virtual void	SetVisibility (int)

virtual void	SetVisibility2D (int)

virtual void	SetVisibility3D (int)

void	SliceIntersectionVisibilityOff ()

void	SliceIntersectionVisibilityOn ()

virtual void	TensorVisibilityOff ()

virtual void	TensorVisibilityOn ()

virtual void	UpdateScalarRange ()

virtual void	VectorVisibilityOff ()

virtual void	VectorVisibilityOn ()

virtual void	Visibility2DOff ()

virtual void	Visibility2DOn ()

virtual void	Visibility3DOff ()

virtual void	Visibility3DOn ()

virtual void	VisibilityOff ()

virtual void	VisibilityOn ()

	vtkMRMLCopyContentMacro (vtkMRMLDisplayNode)

virtual void	SetFrontfaceCulling (int)

virtual int	GetFrontfaceCulling ()

virtual void	FrontfaceCullingOn ()

virtual void	FrontfaceCullingOff ()

virtual void	SetBackfaceCulling (int)

virtual int	GetBackfaceCulling ()

virtual void	BackfaceCullingOn ()

virtual void	BackfaceCullingOff ()

Public Member Functions inherited from vtkMRMLNode
vtkMRMLNode *	AddAndObserveNodeReferenceID (const char referenceRole, const char referencedNodeID, vtkIntArray *events=nullptr)
	Add and observe a reference node from this node for a specific referenceRole. More...

vtkMRMLNode *	AddNodeReferenceID (const char referenceRole, const char referencedNodeID)
	Convenience method that adds a referencedNodeID at the end of the list. More...

void	AddNodeReferenceRole (const char referenceRole, const char mrmlAttributeName=nullptr, vtkIntArray *events=nullptr)
	Add a referenceRole. More...

virtual void	AddToSceneOff ()

virtual void	AddToSceneOn ()

virtual void	CopyContent (vtkMRMLNode *node, bool deepCopy=true)
	Copy node contents from another node of the same type. Does not copy node ID, Scene, Name, SingletonTag, HideFromEditors, AddToScene, UndoEnabled, and node references. If deepCopy is set to false then a shallow copy of bulk data (such as image or mesh data) could be made; copying may be faster but the node may share some data with the source node instead of creating an independent copy. More...

virtual void	CopyReferences (vtkMRMLNode *node)
	Copy the references of the node into this. More...

void	CopyWithScene (vtkMRMLNode *node)
	Copy everything (including Scene and ID) from another node of the same type. More...

void	DisableModifiedEventOff ()

void	DisableModifiedEventOn ()

virtual int	EndModify (int previousDisableModifiedEventState)
	End modifying the node. More...

virtual int	GetAddToScene ()
	node added to MRML scene. More...

const char *	GetAttribute (const char *name)
	Get value of a name value pair attribute. More...

std::vector< std::string >	GetAttributeNames ()
	Get all attribute names. More...

void	GetAttributeNames (vtkStringArray *attributeNames)
	Get all attribute names. Python-wrappable version. More...

virtual vtkIntArray *	GetContentModifiedEvents ()

virtual char *	GetDescription ()

virtual int	GetDisableModifiedEvent ()
	Turn on/off generating InvokeEvent for set macros. More...

virtual int	GetHideFromEditors ()
	Describes if the node is hidden. More...

virtual char *	GetID ()
	ID use by other nodes to reference this node in XML. More...

virtual int	GetInMRMLCallbackFlag ()
	Flags to avoid event loops. More...

virtual int	GetModifiedEventPending ()

virtual char *	GetName ()

vtkMRMLNode *	GetNodeReference (const char *referenceRole)

const char *	GetNodeReferenceID (const char *referenceRole)
	Utility function that returns the first node id for a specific referenceRole. More...

void	GetNodeReferenceIDs (const char referenceRole, std::vector< const char > &referencedNodeIDs)
	Return a list of the referenced node IDs. More...

void	GetNodeReferenceRoles (std::vector< std::string > &roles)

void	GetNodeReferences (const char referenceRole, std::vector< vtkMRMLNode > &nodes)
	Return a list of the referenced nodes. More...

vtkMRMLNode *	GetNthNodeReference (const char *referenceRole, int n)
	Get referenced MRML node for a specific referenceRole. More...

const char *	GetNthNodeReferenceID (const char *referenceRole, int n)
	Return the string of the Nth node ID for a specific reference role. More...

const char *	GetNthNodeReferenceRole (int n)

int	GetNumberOfNodeReferenceRoles ()

int	GetNumberOfNodeReferences (const char *referenceRole)
	Return the number of node IDs for a specific reference role (and nodes as they always have the same size). More...

virtual int	GetSaveWithScene ()
	Save node with MRML scene. More...

virtual vtkMRMLScene *	GetScene ()
	Get the scene this node has been added to. More...

virtual int	GetSelectable ()
	Describes if the node is selectable. More...

virtual int	GetSelected ()
	Get/Set for Selected. More...

virtual char *	GetSingletonTag ()

virtual bool	GetUndoEnabled ()

virtual bool	HasCopyContent () const
	Returns true if the class supports deep and shallow copying node content. More...

bool	HasNodeReferenceID (const char referenceRole, const char referencedNodeID)
	Return true if referencedNodeID is in the node ID list for a specific referenceRole. More...

virtual void	HideFromEditorsOff ()

virtual void	HideFromEditorsOn ()

virtual void	InvokeCustomModifiedEvent (int eventId, void *callData=nullptr)
	This method allows the node to compress events. More...

virtual int	InvokePendingModifiedEvent ()
	Invokes any modified events that are `pending`. More...

bool	IsSingleton ()

void	Modified () override
	Customized version of Modified() allowing to compress vtkCommand::ModifiedEvent. More...

virtual void	OnNodeAddedToScene ()

void	PrintSelf (ostream &os, vtkIndent indent) override

virtual void	ProcessChildNode (vtkMRMLNode *)
	Set dependencies between this node and a child node when parsing XML file. More...

void	RemoveAttribute (const char *name)
	Remove attribute with the specified name. More...

void	RemoveNodeReferenceIDs (const char *referenceRole)
	Remove all node IDs and associated nodes for a specific referenceRole. More...

void	RemoveNthNodeReferenceID (const char *referenceRole, int n)
	Convenience method that removes the Nth node ID from the list. More...

virtual void	Reset (vtkMRMLNode *defaultNode)
	Reset node attributes to the initial state as defined in the constructor or the passed default node. More...

virtual void	SaveWithSceneOff ()

virtual void	SaveWithSceneOn ()

virtual void	SelectableOff ()

virtual void	SelectableOn ()

virtual void	SelectedOff ()

virtual void	SelectedOn ()

virtual void	SetAddToScene (int)

void	SetAddToSceneNoModify (int value)

vtkMRMLNode *	SetAndObserveNodeReferenceID (const char referenceRole, const char referencedNodeID, vtkIntArray *events=nullptr)
	Set and observe a reference node from this node for a specific referenceRole. More...

vtkMRMLNode *	SetAndObserveNthNodeReferenceID (const char referenceRole, int n, const char referencedNodeID, vtkIntArray *events=nullptr)
	Set and observe the Nth node ID for a specific reference role. More...

void	SetAttribute (const char name, const char value)
	Set a name value pair attribute. More...

virtual void	SetDescription (const char *)
	Text description of this node, to be set by the user. More...

void	SetDisableModifiedEvent (int onOff)

virtual void	SetHideFromEditors (int)

void	SetInMRMLCallbackFlag (int flag)

virtual void	SetName (const char *)
	Name of this node, to be set by the user. More...

vtkMRMLNode *	SetNodeReferenceID (const char referenceRole, const char referencedNodeID)
	Set a reference to a node with specified nodeID from this node for a specific referenceRole. More...

vtkMRMLNode *	SetNthNodeReferenceID (const char referenceRole, int n, const char referencedNodeID)
	Set a N-th reference from this node with specified referencedNodeID for a specific referenceRole. More...

virtual void	SetSaveWithScene (int)

virtual void	SetScene (vtkMRMLScene *scene)
	This method is for internal use only. Use AddNode method of vtkMRMLScene to add a node to the scene. More...

virtual void	SetSelectable (int)

virtual void	SetSelected (int)

void	SetSingletonOff ()

void	SetSingletonOn ()

virtual void	SetSingletonTag (const char *)
	Tag that make this node a singleton in the scene. More...

virtual void	SetUndoEnabled (bool)

virtual int	StartModify ()
	Start modifying the node. Disable Modify events. More...

virtual void	UndoEnabledOff ()

virtual void	UndoEnabledOn ()

const char *	URLDecodeString (const char *inString)
	Decode a URL string. More...

const char *	URLEncodeString (const char *inString)
	Encode a URL string. More...

virtual void	WriteNodeBodyXML (ostream &of, int indent)
	Write this node's body to a MRML file in XML format. More...

std::string	XMLAttributeDecodeString (const std::string &inString)
	Decode an XML attribute string. More...

std::string	XMLAttributeEncodeString (const std::string &inString)
	Encode an XML attribute string (replaces special characters by code sequences) More...

Static Public Member Functions
static int	GetNthScalarInvariant (int i)
	Get the nth scalar invariant to color a Slice More...

static int	GetNumberOfScalarInvariants ()
	Get the number of selected scalar invariants to color a Slice More...

static int	IsTypeOf (const char *type)

static vtkMRMLDiffusionTensorVolumeSliceDisplayNode *	New ()

static vtkMRMLDiffusionTensorVolumeSliceDisplayNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLGlyphableVolumeSliceDisplayNode
static int	IsTypeOf (const char *type)

static vtkMRMLGlyphableVolumeSliceDisplayNode *	New ()

static vtkMRMLGlyphableVolumeSliceDisplayNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLModelDisplayNode
static const char *	GetSliceDisplayModeAsString (int id)
	Convert between slice display mode ID and name. More...

static int	GetSliceDisplayModeFromString (const char *name)

static int	IsTypeOf (const char *type)

static vtkMRMLModelDisplayNode *	New ()

static vtkMRMLModelDisplayNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLDisplayNode
static const char *	GetAttributeLocationAsString (int id)
	Converts attribute location (point or cell data) to string. More...

static int	GetAttributeLocationFromString (const char *name)
	Gets attribute location (point or cell data) from string. More...

static const char *	GetScalarRangeFlagTypeAsString (int flag)

static int	GetScalarRangeFlagTypeFromString (const char *name)
	Gets scalar range flag type from string. More...

static int	IsTypeOf (const char *type)

static vtkMRMLDisplayNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLNode
static int	IsTypeOf (const char *type)

static vtkMRMLNode *	SafeDownCast (vtkObject *o)

Protected Member Functions
void	operator= (const vtkMRMLDiffusionTensorVolumeSliceDisplayNode &)

void	SetDiffusionTensorDisplayPropertiesNodeID (const char *id)

	vtkMRMLDiffusionTensorVolumeSliceDisplayNode ()

	vtkMRMLDiffusionTensorVolumeSliceDisplayNode (const vtkMRMLDiffusionTensorVolumeSliceDisplayNode &)

	~vtkMRMLDiffusionTensorVolumeSliceDisplayNode () override

Protected Member Functions inherited from vtkMRMLGlyphableVolumeSliceDisplayNode
void	operator= (const vtkMRMLGlyphableVolumeSliceDisplayNode &)

virtual void	SetInputToPolyDataPipeline (vtkAlgorithmOutput *glyphPolyData)
	Ignore input polydata as it takes a volume slice as input. More...

	vtkMRMLGlyphableVolumeSliceDisplayNode ()
	Display Information: ColorMode for glyphs. More...

	vtkMRMLGlyphableVolumeSliceDisplayNode (const vtkMRMLGlyphableVolumeSliceDisplayNode &)

	~vtkMRMLGlyphableVolumeSliceDisplayNode () override

Protected Member Functions inherited from vtkMRMLModelDisplayNode
void	operator= (const vtkMRMLModelDisplayNode &)

void	ProcessMRMLEvents (vtkObject caller, unsigned long event, void callData) override

virtual void	SetInputToMeshPipeline (vtkAlgorithmOutput *meshConnection)
	To be reimplemented in subclasses if the input of the pipeline changes. More...

	vtkMRMLModelDisplayNode ()

	vtkMRMLModelDisplayNode (const vtkMRMLModelDisplayNode &)

	~vtkMRMLModelDisplayNode () override

Protected Member Functions inherited from vtkMRMLDisplayNode
void	operator= (const vtkMRMLDisplayNode &)

virtual void	SetColorNodeInternal (vtkMRMLColorNode *newColorNode)

	vtkMRMLDisplayNode ()

	vtkMRMLDisplayNode (const vtkMRMLDisplayNode &)

	~vtkMRMLDisplayNode () override

Protected Member Functions inherited from vtkMRMLNode
virtual const char *	GetMRMLAttributeNameFromReferenceRole (const char *refRole)
	Return the mrml attribute name (if found) associated with a reference role. Return 0 otherwise. More...

virtual const char *	GetReferenceRoleFromMRMLAttributeName (const char *attName)
	Return the reference role (if found) associated with the attribute name found in a MRML scene file. Return 0 otherwise. More...

virtual char *	GetTempURLString ()

void	GetUpdatedReferencedNodeEventList (int &oldReferencedNodeUseCount, int &newReferencedNodeUseCount, vtkIntArray oldConsolidatedEventList, vtkIntArray newConsolidatedEventList, vtkMRMLNode oldReferencedNode, vtkMRMLNode newReferencedNode, vtkMRMLNodeReference referenceToIgnore, vtkIntArray newEvents)

virtual void	InvalidateNodeReferences ()

virtual bool	IsReferenceRoleGeneric (const char *refRole)
	Return true if the reference role is generic (ends with '/') or false otherwise. More...

virtual void	OnNodeReferenceAdded (vtkMRMLNodeReference *reference)

virtual void	OnNodeReferenceModified (vtkMRMLNodeReference *reference)
	Called when a referenced node pointer is modified. More...

virtual void	OnNodeReferenceRemoved (vtkMRMLNodeReference *reference)
	Called when a referenced node pointer is removed (set to nullptr). More...

void	operator= (const vtkMRMLNode &)

void	ParseReferencesAttribute (const char *attValue, std::set< std::string > &references)

virtual void	SetTempURLString (const char *)
	Get/Set the string used to manage encoding/decoding of strings/URLs with special characters. More...

vtkMRMLNode *	UpdateNodeReferenceEventObserver (vtkMRMLNode oldReferencedNode, vtkMRMLNode newReferencedNode, vtkIntArray newEvents, vtkMRMLNodeReference referenceToIgnore)

virtual void	UpdateNodeReferences (const char *referenceRole=nullptr)

virtual void	UpdateNthNodeReference (const char *referenceRole, int n)

	vtkMRMLNode ()

	vtkMRMLNode (const vtkMRMLNode &)

	~vtkMRMLNode () override
	critical to have a virtual destructor! More...

Static Protected Member Functions
static std::vector< int >	GetSupportedColorModes ()

Static Protected Member Functions inherited from vtkMRMLNode
static void	MRMLCallback (vtkObject caller, unsigned long eid, void clientData, void *callData)

Protected Attributes
vtkMRMLDiffusionTensorDisplayPropertiesNode *	DiffusionTensorDisplayPropertiesNode
	ALL MRML nodes. More...

char *	DiffusionTensorDisplayPropertiesNodeID

vtkDiffusionTensorGlyph *	DiffusionTensorGlyphFilter

Protected Attributes inherited from vtkMRMLGlyphableVolumeSliceDisplayNode
int	ColorMode
	Enumerated. More...

vtkAlgorithmOutput *	SliceImagePort

vtkMatrix4x4 *	SliceToXYMatrix

vtkTransform *	SliceToXYTransform

vtkTransformPolyDataFilter *	SliceToXYTransformer

Protected Attributes inherited from vtkMRMLModelDisplayNode
vtkAssignAttribute *	AssignAttribute

double	BackfaceColorHSVOffset [3]

vtkGeometryFilter *	ConvertToPolyDataFilter

vtkPassThrough *	PassThrough

int	SliceDisplayMode

bool	ThresholdEnabled

vtkThreshold *	ThresholdFilter

double	ThresholdRangeTemp [2]
	Temporary variable to allow GetThresholdRange() method to return threshold range as a pointer. More...

Protected Attributes inherited from vtkMRMLDisplayNode
int	ActiveAttributeLocation

char *	ActiveScalarName

double	Ambient

int	BackfaceCulling

int	Clipping

double	Color [3]

vtkMRMLColorNode *	ColorNode

char *	ColorNodeID

double	Diffuse

double	EdgeColor [3]

int	EdgeVisibility

bool	FolderDisplayOverrideAllowed

int	FrontfaceCulling

int	InterpolateTexture

int	Interpolation

vtkWeakPointer< vtkMRMLDisplayableNode >	LastFoundDisplayableNode
	Cached value of last found displayable node (it is expensive to determine it) More...

int	Lighting

double	LineWidth

double	Opacity

double	PointSize

double	Power

int	Representation

double	ScalarRange [2]

int	ScalarRangeFlag

int	ScalarVisibility

double	SelectedAmbient

double	SelectedColor [3]

double	SelectedSpecular

int	Shading

double	SliceIntersectionOpacity

int	SliceIntersectionThickness

double	Specular

int	TensorVisibility

vtkAlgorithmOutput *	TextureImageDataConnection

int	VectorVisibility

std::vector< std::string >	ViewNodeIDs

int	Visibility

int	Visibility2D

int	Visibility3D

Protected Attributes inherited from vtkMRMLNode
int	AddToScene {1}

AttributesType	Attributes

vtkIntArray *	ContentModifiedEvents

char *	Description {nullptr}

int	HideFromEditors {0}

char *	ID {nullptr}

int	InMRMLCallbackFlag {0}
	Flag to avoid event loops More...

vtkCallbackCommand *	MRMLCallbackCommand
	Holders for MRML callbacks. More...

vtkObserverManager *	MRMLObserverManager

char *	Name {nullptr}

NodeReferenceEventsType	NodeReferenceEvents

std::map< std::string, std::string >	NodeReferenceMRMLAttributeNames

NodeReferencesType	NodeReferences

int	SaveWithScene {true}

vtkWeakPointer< vtkMRMLScene >	Scene

int	Selectable {1}

int	Selected {0}

bool	UndoEnabled {false}

Additional Inherited Members
Protected Types inherited from vtkMRMLNode
typedef std::map< std::string, std::string >	AttributesType

typedef std::map< std::string, vtkSmartPointer< vtkIntArray > >	NodeReferenceEventsType

typedef std::vector< vtkSmartPointer< vtkMRMLNodeReference > >	NodeReferenceListType

typedef std::map< std::string, NodeReferenceListType >	NodeReferencesType

Detailed Description

MRML node to represent display properties for tractography.

vtkMRMLDiffusionTensorVolumeSliceDisplayNode nodes store display properties of trajectories from tractography in diffusion MRI data, including color type (by bundle, by fiber, or by scalar invariants), display on/off for tensor glyphs and display of trajectory as a line or tube.

Definition at line 31 of file vtkMRMLDiffusionTensorVolumeSliceDisplayNode.h.

Member Typedef Documentation

◆ Superclass

typedef vtkMRMLGlyphableVolumeSliceDisplayNode vtkMRMLDiffusionTensorVolumeSliceDisplayNode::Superclass

Definition at line 36 of file vtkMRMLDiffusionTensorVolumeSliceDisplayNode.h.

Member Enumeration Documentation

◆ anonymous enum

anonymous enum

Display Information: Geometry to display (not mutually exclusive)

Display Information: Color Mode 0) solid color by group 1) color by scalar invariant 2) color by avg scalar invariant 3) color by other

Enumerator
colorModeSolid
colorModeScalar
colorModeFunctionOfScalar
colorModeUseCellScalars

Definition at line 112 of file vtkMRMLDiffusionTensorVolumeSliceDisplayNode.h.

Constructor & Destructor Documentation

◆ vtkMRMLDiffusionTensorVolumeSliceDisplayNode() [1/2]

vtkMRMLDiffusionTensorVolumeSliceDisplayNode::vtkMRMLDiffusionTensorVolumeSliceDisplayNode ( )

protected

◆ ~vtkMRMLDiffusionTensorVolumeSliceDisplayNode()

vtkMRMLDiffusionTensorVolumeSliceDisplayNode::~vtkMRMLDiffusionTensorVolumeSliceDisplayNode ( )

overrideprotected

◆ vtkMRMLDiffusionTensorVolumeSliceDisplayNode() [2/2]

vtkMRMLDiffusionTensorVolumeSliceDisplayNode::vtkMRMLDiffusionTensorVolumeSliceDisplayNode ( const vtkMRMLDiffusionTensorVolumeSliceDisplayNode & )

protected

Member Function Documentation

◆ Copy()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::Copy ( vtkMRMLNode * node )

overridevirtual

Copy the node's attributes to this object

Reimplemented from vtkMRMLNode.

◆ CreateNodeInstance()

vtkMRMLNode* vtkMRMLDiffusionTensorVolumeSliceDisplayNode::CreateNodeInstance ( )

overridevirtual

MRMLNode methods.

Implements vtkMRMLNode.

◆ GetClassName()

virtual const char* vtkMRMLDiffusionTensorVolumeSliceDisplayNode::GetClassName ( )

virtual

Reimplemented from vtkMRMLGlyphableVolumeSliceDisplayNode.

◆ GetDiffusionTensorDisplayPropertiesNode()

vtkMRMLDiffusionTensorDisplayPropertiesNode* vtkMRMLDiffusionTensorVolumeSliceDisplayNode::GetDiffusionTensorDisplayPropertiesNode ( )

Display Information: ColorMode for glyphs.

MRML nodes that are observed Node reference to ALL DT nodes
Get diffusion tensor display MRML object for fiber glyph.

◆ GetDiffusionTensorDisplayPropertiesNodeID()

virtual char* vtkMRMLDiffusionTensorVolumeSliceDisplayNode::GetDiffusionTensorDisplayPropertiesNodeID ( )

virtual

Get ID of diffusion tensor display MRML object for fiber glyph.

◆ GetNodeTagName()

const char* vtkMRMLDiffusionTensorVolumeSliceDisplayNode::GetNodeTagName ( )

inlineoverridevirtual

Get node XML tag name (like Volume, UnstructuredGrid)

Implements vtkMRMLNode.

Definition at line 60 of file vtkMRMLDiffusionTensorVolumeSliceDisplayNode.h.

◆ GetNthScalarInvariant()

static int vtkMRMLDiffusionTensorVolumeSliceDisplayNode::GetNthScalarInvariant ( int i )

static

Get the nth scalar invariant to color a Slice

◆ GetNumberOfScalarInvariants()

static int vtkMRMLDiffusionTensorVolumeSliceDisplayNode::GetNumberOfScalarInvariants ( )

static

Get the number of selected scalar invariants to color a Slice

◆ GetOutputMeshConnection()

vtkAlgorithmOutput* vtkMRMLDiffusionTensorVolumeSliceDisplayNode::GetOutputMeshConnection ( )

overridevirtual

Return the glyph producer output for the input image data.

See also: GetOutputPolyData()

Reimplemented from vtkMRMLModelDisplayNode.

◆ GetSupportedColorModes()

static std::vector<int> vtkMRMLDiffusionTensorVolumeSliceDisplayNode::GetSupportedColorModes ( )

staticprotected

◆ IsA()

virtual int vtkMRMLDiffusionTensorVolumeSliceDisplayNode::IsA ( const char * type )

virtual

Reimplemented from vtkMRMLGlyphableVolumeSliceDisplayNode.

◆ IsTypeOf()

static int vtkMRMLDiffusionTensorVolumeSliceDisplayNode::IsTypeOf ( const char * type )

static

◆ New()

static vtkMRMLDiffusionTensorVolumeSliceDisplayNode* vtkMRMLDiffusionTensorVolumeSliceDisplayNode::New ( )

static

◆ operator=()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::operator= ( const vtkMRMLDiffusionTensorVolumeSliceDisplayNode & )

protected

◆ PrintSelf()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

override

◆ ProcessMRMLEvents()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::ProcessMRMLEvents	(	vtkObject *	,
		unsigned	long,
		void *
	)

overridevirtual

alternative method to propagate events generated in Display nodes

Reimplemented from vtkMRMLNode.

◆ ReadXMLAttributes()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::ReadXMLAttributes ( const char ** atts )

overridevirtual

Read node attributes from XML (MRML) file

Reimplemented from vtkMRMLNode.

◆ SafeDownCast()

static vtkMRMLDiffusionTensorVolumeSliceDisplayNode* vtkMRMLDiffusionTensorVolumeSliceDisplayNode::SafeDownCast ( vtkObject * o )

static

◆ SetAndObserveDiffusionTensorDisplayPropertiesNodeID()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::SetAndObserveDiffusionTensorDisplayPropertiesNodeID ( const char * ID )

Set diffusion tensor display MRML object for fiber glyph.

◆ SetColorModeToFunctionOfScalar()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::SetColorModeToFunctionOfScalar ( )

inline

Color according to the tensors using a function of scalar invariants along the tract. This enables coloring by average FA, for example.

Definition at line 139 of file vtkMRMLDiffusionTensorVolumeSliceDisplayNode.h.

◆ SetColorModeToScalar()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::SetColorModeToScalar ( )

inline

Color according to the tensors using various scalar invariants.

Definition at line 132 of file vtkMRMLDiffusionTensorVolumeSliceDisplayNode.h.

◆ SetColorModeToSolid()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::SetColorModeToSolid ( )

inline

Display Information: ColorMode for ALL nodes.

Color by solid color (for example the whole fiber bundle red. blue, etc.)

Definition at line 126 of file vtkMRMLDiffusionTensorVolumeSliceDisplayNode.h.

◆ SetColorModeToUseCellScalars()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::SetColorModeToUseCellScalars ( )

inline

Use to color by the active cell scalars. This is intended to support external processing of fibers, for example to label each with the distance of that fiber from an fMRI activation. Then by making that information the active cell scalar field, this will allow coloring by that information. TO DO: make sure this information can be saved with the tract, save name of active scalar field if needed.

Definition at line 150 of file vtkMRMLDiffusionTensorVolumeSliceDisplayNode.h.

◆ SetDiffusionTensorDisplayPropertiesNodeID()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::SetDiffusionTensorDisplayPropertiesNodeID ( const char * id )

protected

◆ SetSliceGlyphRotationMatrix()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::SetSliceGlyphRotationMatrix ( vtkMatrix4x4 * matrix )

overridevirtual

Set slice to IJK transformation

Reimplemented from vtkMRMLGlyphableVolumeSliceDisplayNode.

◆ SetSliceImagePort()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::SetSliceImagePort ( vtkAlgorithmOutput * imagePort )

overridevirtual

Set ImageData for a volume slice

Reimplemented from vtkMRMLGlyphableVolumeSliceDisplayNode.

◆ SetSlicePositionMatrix()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::SetSlicePositionMatrix ( vtkMatrix4x4 * matrix )

overridevirtual

Set slice to RAS transformation

Reimplemented from vtkMRMLGlyphableVolumeSliceDisplayNode.

◆ UpdateAssignedAttribute()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::UpdateAssignedAttribute ( )

overridevirtual

Update the pipeline based on this node attributes

Reimplemented from vtkMRMLModelDisplayNode.

◆ UpdateReferenceID()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::UpdateReferenceID	(	const char *	oldID,
		const char *	newID
	)

overridevirtual

Update the stored reference to another node in the scene

Reimplemented from vtkMRMLNode.

◆ UpdateReferences()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::UpdateReferences ( )

overridevirtual

Updates this node if it depends on other nodes when the node is deleted in the scene

Reimplemented from vtkMRMLNode.

◆ UpdateScene()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::UpdateScene ( vtkMRMLScene * scene )

overridevirtual

Finds the storage node and read the data

Reimplemented from vtkMRMLNode.

◆ WriteXML()

void vtkMRMLDiffusionTensorVolumeSliceDisplayNode::WriteXML	(	ostream &	of,
		int	indent
	)

overridevirtual

Write this node's information to a MRML file in XML format.

Reimplemented from vtkMRMLNode.

Member Data Documentation

◆ DiffusionTensorDisplayPropertiesNode

vtkMRMLDiffusionTensorDisplayPropertiesNode* vtkMRMLDiffusionTensorVolumeSliceDisplayNode::DiffusionTensorDisplayPropertiesNode

protected

ALL MRML nodes.

Definition at line 197 of file vtkMRMLDiffusionTensorVolumeSliceDisplayNode.h.

◆ DiffusionTensorDisplayPropertiesNodeID

char* vtkMRMLDiffusionTensorVolumeSliceDisplayNode::DiffusionTensorDisplayPropertiesNodeID

protected

Definition at line 198 of file vtkMRMLDiffusionTensorVolumeSliceDisplayNode.h.

◆ DiffusionTensorGlyphFilter

vtkDiffusionTensorGlyph* vtkMRMLDiffusionTensorVolumeSliceDisplayNode::DiffusionTensorGlyphFilter

protected

Definition at line 194 of file vtkMRMLDiffusionTensorVolumeSliceDisplayNode.h.

The documentation for this class was generated from the following file:

Libs/MRML/Core/vtkMRMLDiffusionTensorVolumeSliceDisplayNode.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ Superclass

Member Enumeration Documentation

◆ anonymous enum

Constructor & Destructor Documentation

◆ vtkMRMLDiffusionTensorVolumeSliceDisplayNode() [1/2]

◆ ~vtkMRMLDiffusionTensorVolumeSliceDisplayNode()

◆ vtkMRMLDiffusionTensorVolumeSliceDisplayNode() [2/2]

Member Function Documentation

◆ Copy()

◆ CreateNodeInstance()

◆ GetClassName()

◆ GetDiffusionTensorDisplayPropertiesNode()

◆ GetDiffusionTensorDisplayPropertiesNodeID()

◆ GetNodeTagName()

◆ GetNthScalarInvariant()

◆ GetNumberOfScalarInvariants()

◆ GetOutputMeshConnection()

◆ GetSupportedColorModes()

◆ IsA()

◆ IsTypeOf()

◆ New()

◆ operator=()

◆ PrintSelf()

◆ ProcessMRMLEvents()

◆ ReadXMLAttributes()

◆ SafeDownCast()

◆ SetAndObserveDiffusionTensorDisplayPropertiesNodeID()

◆ SetColorModeToFunctionOfScalar()

◆ SetColorModeToScalar()

◆ SetColorModeToSolid()

◆ SetColorModeToUseCellScalars()

◆ SetDiffusionTensorDisplayPropertiesNodeID()

◆ SetSliceGlyphRotationMatrix()

◆ SetSliceImagePort()

◆ SetSlicePositionMatrix()

◆ UpdateAssignedAttribute()

◆ UpdateReferenceID()

◆ UpdateReferences()

◆ UpdateScene()

◆ WriteXML()

Member Data Documentation

◆ DiffusionTensorDisplayPropertiesNode

◆ DiffusionTensorDisplayPropertiesNodeID

◆ DiffusionTensorGlyphFilter