Read vector image (up to 5D) from a single file. More...

#include <Libs/vtkITK/vtkITKArchetypeImageSeriesVectorReaderFile.h>

Inheritance diagram for vtkITKArchetypeImageSeriesVectorReaderFile:

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Collaboration diagram for vtkITKArchetypeImageSeriesVectorReaderFile:

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Public Types
typedef vtkITKArchetypeImageSeriesReader	Superclass

Public Types inherited from vtkITKArchetypeImageSeriesReader
enum	{ GDCM = 0 , DCMTK }
	Reader to use when reading as a scalar image data. More...

using	CoordinateOrientationCode = itk::SpatialOrientationEnums::ValidCoordinateOrientations

typedef vtkImageAlgorithm	Superclass

Public Member Functions
virtual const char *	GetClassName ()

virtual int	IsA (const char *type)

void	PrintSelf (ostream &os, vtkIndent indent) override

Public Member Functions inherited from vtkITKArchetypeImageSeriesReader
unsigned int	AddFileName (const char *filename)

void	AnalyzeDicomHeaders ()

void	AssembleNthVolume (int n)

int	AssembleVolumeContainingArchetype ()

virtual int	CanReadFile (const char *filename)
	Determine if the file can be read using ITK.

int	ExistContentTime (const char *contentTime)

int	ExistDiffusionGradientOrientation (float *dgo)

int	ExistEchoNumbers (const char *echoNumbers)

int	ExistImageOrientationPatient (float *directionCosine)

int	ExistImagePositionPatient (float *ipp)

int	ExistSeriesInstanceUID (const char *SeriesInstanceUID)
	check the existence of given discriminator

int	ExistSliceLocation (float sliceLocation)

int	ExistTriggerTime (const char *triggerTime)

virtual bool	GetAnalyzeHeader ()

virtual char *	GetArchetype ()

virtual double *	GetDefaultDataOrigin ()

virtual void	GetDefaultDataOrigin (double &, double &, double &)

virtual void	GetDefaultDataOrigin (double[3])

virtual double *	GetDefaultDataSpacing ()

virtual void	GetDefaultDataSpacing (double &, double &, double &)

virtual void	GetDefaultDataSpacing (double[3])

virtual CoordinateOrientationCode	GetDesiredCoordinateOrientation ()

virtual int	GetDICOMImageIOApproach ()

const char *	GetFileName (unsigned int n)

const std::vector< std::string > &	GetFileNames ()
	Return all the file names.

virtual int	GetFileNameSliceCount ()

virtual int	GetFileNameSliceOffset ()

virtual int	GetFileNameSliceSpacing ()

bool	GetGroupingByTags ()
	set/get functions for grouping by tags

vtkMatrix4x4 *	GetMeasurementFrameMatrix ()
	Returns the Measurement frame matrix.

const itk::MetaDataDictionary &	GetMetaDataDictionary () const
	Return the MetaDataDictionary from the ITK layer.

const char *	GetNthContentTime (unsigned int n)

float *	GetNthDiffusionGradientOrientation (unsigned int n)

const char *	GetNthEchoNumbers (unsigned int n)

const char *	GetNthFileName (int idxSeriesInstanceUID, int idxContentTime, int idxTriggerTime, int idxEchoNumbers, int idxDiffusionGradientOrientation, int idxSliceLocation, int idxImageOrientationPatient, int n)

float *	GetNthImageOrientationPatient (unsigned int n)

float *	GetNthImagePositionPatient (unsigned int n)

const char *	GetNthKey (unsigned int n)

const char *	GetNthSeriesInstanceUID (unsigned int n)
	methods to get N-th discriminator

float	GetNthSliceLocation (unsigned int n)

const char *	GetNthTriggerTime (unsigned int n)

const char *	GetNthValue (unsigned int n)

virtual unsigned int	GetNumberOfComponents ()

unsigned int	GetNumberOfContentTime ()

unsigned int	GetNumberOfDiffusionGradientOrientation ()

unsigned int	GetNumberOfEchoNumbers ()

unsigned int	GetNumberOfFileNames ()
	See how many file names were generated during ExecuteInformation.

unsigned int	GetNumberOfImageOrientationPatient ()

unsigned int	GetNumberOfImagePositionPatient ()

unsigned int	GetNumberOfItemsInDictionary ()

unsigned int	GetNumberOfSeriesInstanceUIDs ()
	get number of certain discriminators in the directory

unsigned int	GetNumberOfSliceLocation ()

unsigned int	GetNumberOfTriggerTime ()

virtual int	GetOutputScalarType ()

vtkMatrix4x4 *	GetRasToIjkMatrix ()
	Returns an IJK to RAS transformation matrix.

int	GetSelectedContentTime ()

int	GetSelectedDiffusion ()

int	GetSelectedEchoNumbers ()

int	GetSelectedOrientation ()

int	GetSelectedSlice ()

int	GetSelectedTriggerTime ()

int	GetSelectedUID ()

virtual int	GetSingleFile ()

const char *	GetTagValue (char *tag)

virtual char	GetUseNativeCoordinateOrientation ()

virtual int	GetUseOrientationFromFile ()

virtual int	GetVoxelVectorType ()

void	GroupFiles (int idxSeriesInstanceUID, int idxContentTime, int idxTriggerTime, int idxEchoNumbers, int idxDiffusionGradientOrientation, int idxSliceLocation, int idxImageOrientationPatient)

bool	HasKey (char *tag)

int	InsertContentTime (const char *aTime)

int	InsertDiffusionGradientOrientation (float *a)

int	InsertEchoNumbers (const char *aEcho)

int	InsertImageOrientationPatient (float *a)

int	InsertImagePositionPatient (float *a)

int	InsertNextSliceLocation ()

int	InsertSeriesInstanceUIDs (const char *aUID)

int	InsertSliceLocation (float a)

int	InsertTriggerTime (const char *aTime)

void	ParseDictionary ()

void	PrintSelf (ostream &os, vtkIndent indent) override

void	ResetFileNames ()

virtual void	SetAnalyzeHeader (bool)
	Whether try analyzing the dicom headers.

virtual void	SetArchetype (const char *)
	Specify the archetype filename for the series.

virtual void	SetDefaultDataOrigin (double, double, double)

virtual void	SetDefaultDataOrigin (double[3])

virtual void	SetDefaultDataSpacing (double, double, double)

virtual void	SetDefaultDataSpacing (double[3])

void	SetDesiredCoordinateOrientationToAxial ()
	Set the orientation of the output image.

void	SetDesiredCoordinateOrientationToCoronal ()

void	SetDesiredCoordinateOrientationToNative ()

void	SetDesiredCoordinateOrientationToSagittal ()

virtual void	SetDICOMImageIOApproach (int)

void	SetDICOMImageIOApproachToDCMTK ()

void	SetDICOMImageIOApproachToGDCM ()

virtual void	SetFileNameSliceCount (int)

virtual void	SetFileNameSliceOffset (int)

virtual void	SetFileNameSliceSpacing (int)

void	SetGroupingByTagsOff ()

void	SetGroupingByTagsOn ()

virtual void	SetNumberOfComponents (unsigned int)
	Get number of scalars.

virtual void	SetOutputScalarType (int)
	Get the file format. Pixels are this type in the file.

virtual void	SetOutputScalarTypeToChar ()

virtual void	SetOutputScalarTypeToDouble ()

virtual void	SetOutputScalarTypeToFloat ()

virtual void	SetOutputScalarTypeToInt ()

virtual void	SetOutputScalarTypeToLong ()

virtual void	SetOutputScalarTypeToNative ()

virtual void	SetOutputScalarTypeToShort ()

virtual void	SetOutputScalarTypeToUnsignedChar ()

virtual void	SetOutputScalarTypeToUnsignedInt ()

virtual void	SetOutputScalarTypeToUnsignedLong ()

virtual void	SetOutputScalarTypeToUnsignedShort ()

void	SetSelectedContentTime (int v)

void	SetSelectedDiffusion (int v)

void	SetSelectedEchoNumbers (int v)

void	SetSelectedOrientation (int v)

void	SetSelectedSlice (int v)

void	SetSelectedTriggerTime (int v)

void	SetSelectedUID (int v)

virtual void	SetSingleFile (int)
	Whether load in a single file or a series.

void	SetUseNativeOriginOff ()
	Use image center as origin.

void	SetUseNativeOriginOn ()
	Use image origin from the file.

virtual void	SetUseOrientationFromFile (int)
	Whether to use orientation from file.

virtual void	SetVoxelVectorType (int)
	Defines how to interpret voxel components.

Static Public Member Functions
static int	IsTypeOf (const char *type)

static vtkITKArchetypeImageSeriesVectorReaderFile *	New ()

static vtkITKArchetypeImageSeriesVectorReaderFile *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkITKArchetypeImageSeriesReader
static bool	IsListPixelComponentTypeInMetaDataDictionary (const itk::MetaDataDictionary &dictionary)

static int	IsTypeOf (const char *type)

static vtkITKArchetypeImageSeriesReader *	New ()

static bool	ReadMeasurementFrameMatrixFromMetaDataDictionary (const itk::MetaDataDictionary &dictionary, vtkMatrix4x4 *measurementFrameMatrix)

static vtkITKArchetypeImageSeriesReader *	SafeDownCast (vtkObject *o)

Protected Member Functions
void	ExecuteDataWithInformation (vtkDataObject output, vtkInformation outInfo) override

	vtkITKArchetypeImageSeriesVectorReaderFile ()

	~vtkITKArchetypeImageSeriesVectorReaderFile () override

Protected Member Functions inherited from vtkITKArchetypeImageSeriesReader
itk::ImageIOBase::Pointer	GetImageIO (const char *filename)
	Get the image IO for the specified filename.

void	GetScalarRangeMetaDataKeys (itk::ImageIOBase::Pointer imageIO, std::string range_keys[2])

int	RequestInformation (vtkInformation , vtkInformationVector , vtkInformationVector ) override

void	SetMetaDataScalarRangeToPointDataInfo (vtkImageData *data)

	vtkITKArchetypeImageSeriesReader ()

	~vtkITKArchetypeImageSeriesReader () override

Static Protected Member Functions
static void	ReadProgressCallback (itk::Object obj, const itk::EventObject &, void data)

Static Protected Member Functions inherited from vtkITKArchetypeImageSeriesReader
static std::string	GetMetaDataWithoutSpaces (const itk::MetaDataDictionary &dict, const std::string &tag)
	Get MetaData from dictionary, removing all whitespaces from the string.

Additional Inherited Members
Public Attributes inherited from vtkITKArchetypeImageSeriesReader
std::vector< std::string >	Tags

std::vector< std::string >	TagValues

Protected Attributes inherited from vtkITKArchetypeImageSeriesReader
std::vector< std::string >	AllFileNames

bool	AnalyzeHeader

char *	Archetype

bool	ArchetypeIsDICOM

std::vector< std::string >	ContentTime

int	DataExtent [6]

double	DefaultDataOrigin [3]

double	DefaultDataSpacing [3]

CoordinateOrientationCode	DesiredCoordinateOrientation

int	DICOMImageIOApproach

itk::MetaDataDictionary	Dictionary

std::vector< std::vector< float > >	DiffusionGradientOrientation

std::vector< std::string >	EchoNumbers

std::vector< std::string >	FileNames

int	FileNameSliceCount

std::vector< std::pair< double, int > >	FileNameSliceKey

int	FileNameSliceOffset

int	FileNameSliceSpacing

bool	GroupingByTags

std::vector< std::vector< float > >	ImageOrientationPatient

std::vector< std::vector< float > >	ImagePositionPatient

unsigned int	IndexArchetype

std::vector< long int >	IndexContentTime

std::vector< long int >	IndexDiffusionGradientOrientation

std::vector< long int >	IndexEchoNumbers

std::vector< long int >	IndexImageOrientationPatient

std::vector< long int >	IndexImagePositionPatient

std::vector< long int >	IndexSeriesInstanceUIDs
	index of each dicom file into the above arrays

std::vector< long int >	IndexSliceLocation

std::vector< long int >	IndexTriggerTime

bool	IsOnlyFile

vtkMatrix4x4 *	MeasurementFrameMatrix

std::vector< double >	MetaDataScalarRangeMaxima

std::vector< double >	MetaDataScalarRangeMinima

unsigned int	NumberOfComponents

int	OutputScalarType

vtkMatrix4x4 *	RasToIjkMatrix

float	ScanAxis [3]

float	ScanOrigin [3]

int	SelectedContentTime

int	SelectedDiffusion

int	SelectedEchoNumbers

int	SelectedOrientation

int	SelectedSlice

int	SelectedTriggerTime

int	SelectedUID

std::vector< std::string >	SeriesInstanceUIDs

int	SingleFile

std::vector< float >	SliceLocation

std::vector< std::string >	TriggerTime

char	UseNativeCoordinateOrientation

bool	UseNativeOrigin

char	UseNativeScalarType

int	UseOrientationFromFile

int	VoxelVectorType

Detailed Description

Read vector image (up to 5D) from a single file.

Definition at line 20 of file vtkITKArchetypeImageSeriesVectorReaderFile.h.

Member Typedef Documentation

◆ Superclass

typedef vtkITKArchetypeImageSeriesReader vtkITKArchetypeImageSeriesVectorReaderFile::Superclass

Definition at line 24 of file vtkITKArchetypeImageSeriesVectorReaderFile.h.

Constructor & Destructor Documentation

◆ vtkITKArchetypeImageSeriesVectorReaderFile()

vtkITKArchetypeImageSeriesVectorReaderFile::vtkITKArchetypeImageSeriesVectorReaderFile ( )

protected

◆ ~vtkITKArchetypeImageSeriesVectorReaderFile()

vtkITKArchetypeImageSeriesVectorReaderFile::~vtkITKArchetypeImageSeriesVectorReaderFile ( )

overrideprotected

Member Function Documentation

◆ ExecuteDataWithInformation()

void vtkITKArchetypeImageSeriesVectorReaderFile::ExecuteDataWithInformation	(	vtkDataObject *	output,
		vtkInformation *	outInfo )

overrideprotected

◆ GetClassName()

virtual const char * vtkITKArchetypeImageSeriesVectorReaderFile::GetClassName ( )

virtual

Reimplemented from vtkITKArchetypeImageSeriesReader.

◆ IsA()

virtual int vtkITKArchetypeImageSeriesVectorReaderFile::IsA ( const char * type )

virtual

Reimplemented from vtkITKArchetypeImageSeriesReader.

◆ IsTypeOf()

static int vtkITKArchetypeImageSeriesVectorReaderFile::IsTypeOf ( const char * type )

static

◆ New()

static vtkITKArchetypeImageSeriesVectorReaderFile * vtkITKArchetypeImageSeriesVectorReaderFile::New ( )

static

◆ PrintSelf()

void vtkITKArchetypeImageSeriesVectorReaderFile::PrintSelf	(	ostream &	os,
		vtkIndent	indent )

override

◆ ReadProgressCallback()

static void vtkITKArchetypeImageSeriesVectorReaderFile::ReadProgressCallback	(	itk::Object *	obj,
		const itk::EventObject &	,
		void *	data )

staticprotected

◆ SafeDownCast()

static vtkITKArchetypeImageSeriesVectorReaderFile * vtkITKArchetypeImageSeriesVectorReaderFile::SafeDownCast ( vtkObject * o )

static

The documentation for this class was generated from the following file:

Libs/vtkITK/vtkITKArchetypeImageSeriesVectorReaderFile.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Static Protected Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ Superclass

Constructor & Destructor Documentation

◆ vtkITKArchetypeImageSeriesVectorReaderFile()

◆ ~vtkITKArchetypeImageSeriesVectorReaderFile()

Member Function Documentation

◆ ExecuteDataWithInformation()

◆ GetClassName()

◆ IsA()

◆ IsTypeOf()

◆ New()

◆ PrintSelf()

◆ ReadProgressCallback()

◆ SafeDownCast()