SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect Class Reference

Inheritance diagram for SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect:

Collaboration diagram for SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect:

Public Member Functions
	__init__ (self, scriptedEffect)
	clone (self)
	computePreviewLabelmap (self, mergedImage, outputLabelmap)
	helpText (self)
	icon (self)
	reset (self)
	setMRMLDefaults (self)
	setupOptionsFrame (self)
	updateAlgorithmParameterFromGUI (self)
	updateGUIFromMRML (self)
	updateMRMLFromGUI (self)
Public Member Functions inherited from SegmentEditorEffects.AbstractScriptedSegmentEditorAutoCompleteEffect.AbstractScriptedSegmentEditorAutoCompleteEffect
	__del__ (self)
	__init__ (self, scriptedEffect)
	cleanup (self)
	createCursor (self, widget)
	effectiveExtentChanged (self)
	getPreviewNode (self)
	getPreviewOpacity (self)
	getPreviewShow3D (self)
	observeSegmentation (self, observationEnabled)
	onApply (self)
	onCancel (self)
	onPreview (self)
	onSegmentationModified (self, caller, event)
	preview (self)
	setPreviewOpacity (self, opacity)
	setPreviewShow3D (self, show)
Public Member Functions inherited from SegmentEditorEffects.AbstractScriptedSegmentEditorEffect.AbstractScriptedSegmentEditorEffect
	__init__ (self, scriptedEffect)
	rasToXy (self, ras, viewWidget)
	register (self)
	setWidgetMinMaxStepFromImageSpacing (self, spinbox, imageData)
	xyToIjk (self, xy, viewWidget, image, parentTransformNode=None)
	xyToRas (self, xy, viewWidget)
	xyzToIjk (self, xyz, viewWidget, image, parentTransformNode=None)
	xyzToRas (self, xyz, viewWidget)

Public Attributes
	growCutFilter = None
	seedLocalityFactorSlider = slicer.qMRMLSliderWidget()
	updateAlgorithmParameterFromGUI
Public Attributes inherited from SegmentEditorEffects.AbstractScriptedSegmentEditorAutoCompleteEffect.AbstractScriptedSegmentEditorAutoCompleteEffect
	applyButton = qt.QPushButton(_("Apply"))
	autoUpdateCheckBox = qt.QCheckBox(_("Auto-update"))
	cancelButton = qt.QPushButton(_("Cancel"))
	clippedMaskImageData = None
bool	clippedMaskImageDataRequired = False
	clippedMasterImageData = None
bool	clippedMasterImageDataRequired = False
	delayedAutoUpdateTimer = qt.QTimer()
float	extentGrowthRatio = 0.1
	mergedLabelmapGeometryImage = None
int	minimumExtentMargin = 3
int	minimumNumberOfSegments = 1
int	minimumNumberOfSegmentsWithEditableArea = 1
	observedSegmentation = None
	onApply
	onCancel
	onPreview = autoUpdateDelaySec * 1000
	onSegmentationModified
	previewButton = qt.QPushButton(_("Initialize"))
bool	previewComputationInProgress = False
	previewOpacitySlider = ctk.ctkSliderWidget()
	previewShow3DButton = qt.QPushButton(_("Show 3D"))
list	segmentationNodeObserverTags = []
	selectedSegmentIds = None
dict	selectedSegmentModifiedTimes = {}
Public Attributes inherited from SegmentEditorEffects.AbstractScriptedSegmentEditorEffect.AbstractScriptedSegmentEditorEffect
	scriptedEffect = scriptedEffect

Additional Inherited Members
Static Public Member Functions inherited from SegmentEditorEffects.AbstractScriptedSegmentEditorAutoCompleteEffect.AbstractScriptedSegmentEditorAutoCompleteEffect
	isBackgroundLabelmap (labelmapOrientedImageData, label=None)

Detailed Description

AutoCompleteEffect is an effect that can create a full segmentation
from a partial segmentation (not all slices are segmented or only
part of the target structures are painted).

Definition at line 14 of file SegmentEditorGrowFromSeedsEffect.py.

Constructor & Destructor Documentation

__init__()

SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect.__init__	(		self,
			scriptedEffect )

Definition at line 20 of file SegmentEditorGrowFromSeedsEffect.py.

Member Function Documentation

clone()

SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect.clone

(

self

)

Definition at line 30 of file SegmentEditorGrowFromSeedsEffect.py.

computePreviewLabelmap()

SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect.computePreviewLabelmap	(		self,
			mergedImage,
			outputLabelmap )

Definition at line 108 of file SegmentEditorGrowFromSeedsEffect.py.

helpText()

SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect.helpText

(

self

)

Definition at line 43 of file SegmentEditorGrowFromSeedsEffect.py.

icon()

SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect.icon

(

self

)

Definition at line 37 of file SegmentEditorGrowFromSeedsEffect.py.

reset()

SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect.reset

(

self

)

Reimplemented from SegmentEditorEffects.AbstractScriptedSegmentEditorAutoCompleteEffect.AbstractScriptedSegmentEditorAutoCompleteEffect.

Definition at line 60 of file SegmentEditorGrowFromSeedsEffect.py.

setMRMLDefaults()

SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect.setMRMLDefaults

(

self

)

Reimplemented from SegmentEditorEffects.AbstractScriptedSegmentEditorAutoCompleteEffect.AbstractScriptedSegmentEditorAutoCompleteEffect.

Definition at line 83 of file SegmentEditorGrowFromSeedsEffect.py.

setupOptionsFrame()

SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect.setupOptionsFrame

(

self

)

Reimplemented from SegmentEditorEffects.AbstractScriptedSegmentEditorAutoCompleteEffect.AbstractScriptedSegmentEditorAutoCompleteEffect.

Definition at line 65 of file SegmentEditorGrowFromSeedsEffect.py.

updateAlgorithmParameterFromGUI()

SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect.updateAlgorithmParameterFromGUI

(

self

)

Definition at line 101 of file SegmentEditorGrowFromSeedsEffect.py.

updateGUIFromMRML()

SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect.updateGUIFromMRML

(

self

)

Reimplemented from SegmentEditorEffects.AbstractScriptedSegmentEditorAutoCompleteEffect.AbstractScriptedSegmentEditorAutoCompleteEffect.

Definition at line 87 of file SegmentEditorGrowFromSeedsEffect.py.

updateMRMLFromGUI()

SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect.updateMRMLFromGUI

(

self

)

Reimplemented from SegmentEditorEffects.AbstractScriptedSegmentEditorAutoCompleteEffect.AbstractScriptedSegmentEditorAutoCompleteEffect.

Definition at line 97 of file SegmentEditorGrowFromSeedsEffect.py.

Member Data Documentation

growCutFilter

SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect.growCutFilter = None

Definition at line 28 of file SegmentEditorGrowFromSeedsEffect.py.

seedLocalityFactorSlider

SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect.seedLocalityFactorSlider = slicer.qMRMLSliderWidget()

Definition at line 69 of file SegmentEditorGrowFromSeedsEffect.py.

updateAlgorithmParameterFromGUI

SegmentEditorEffects.SegmentEditorGrowFromSeedsEffect.SegmentEditorGrowFromSeedsEffect.updateAlgorithmParameterFromGUI

Definition at line 81 of file SegmentEditorGrowFromSeedsEffect.py.

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The documentation for this class was generated from the following file:

• Modules/Loadable/Segmentations/EditorEffects/Python/SegmentEditorEffects/SegmentEditorGrowFromSeedsEffect.py