Reads Nearly Raw Raster Data files. More...

#include <Libs/vtkTeem/vtkTeemNRRDReader.h>

Inheritance diagram for vtkTeemNRRDReader:

Collaboration diagram for vtkTeemNRRDReader:

Public Types
typedef vtkMedicalImageReader2	Superclass

Public Member Functions
vtkImageData *	AllocateOutputData (vtkDataObject out, vtkInformation outInfo) override

void	AllocateOutputData (vtkImageData out, vtkInformation outInfo, int *uExtent) override

void	AllocatePointData (vtkImageData out, vtkInformation outInfo)

int	CanReadFile (const char *filename) override
	is the given file name a NRRD file? More...

const char *	GetAxisLabel (unsigned int axis)
	Get label for specified axis. More...

const char *	GetAxisUnit (unsigned int axis)
	Get unit for specified axis. More...

virtual const char *	GetClassName ()

virtual std::string	GetDataArrayName ()

virtual int	GetDataType ()

const char *	GetDescriptiveName () override
	A descriptive name for this format More...

const char *	GetFileExtensions () override
	Valid extentsions More...

const char *	GetHeaderKeys ()

const std::map< std::string, std::string >	GetHeaderKeysMap ()

const std::vector< std::string >	GetHeaderKeysVector ()

const char *	GetHeaderValue (const char *key)
	Get a value given a key in the header More...

vtkMatrix4x4 *	GetMeasurementFrameMatrix ()
	Returns the measurement frame matrix used for tensor valued data. More...

virtual int	GetNumberOfComponents ()

virtual int	GetPointDataType ()

vtkMatrix4x4 *	GetRasToIjkMatrix ()
	Returns a IJK to RAS transformation matrix More...

virtual int	GetReadStatus ()

virtual int	IsA (const char *type)

int	NrrdToVTKScalarType (const int nrrdPixelType) const

void	PrintSelf (ostream &os, vtkIndent indent) override

virtual void	SetDataArrayName (std::string)

virtual void	SetDataType (int)
	Set the data type: int, float.... More...

virtual void	SetNumberOfComponents (int)

virtual void	SetPointDataType (int)
	Point data field type More...

void	SetUseNativeOriginOff ()
	Use image center as origin More...

void	SetUseNativeOriginOn ()
	Use image origin from the file More...

int	VTKToNrrdPixelType (const int vtkPixelType) const

Static Public Member Functions
static int	IsTypeOf (const char *type)

static vtkTeemNRRDReader *	New ()

static vtkTeemNRRDReader *	SafeDownCast (vtkObject *o)

Protected Member Functions
void	ExecuteDataWithInformation (vtkDataObject output, vtkInformation outInfo) override

void	ExecuteInformation () override

int	tenSpaceDirectionReduce (Nrrd nout, const Nrrd nin, double SD[9])

	vtkTeemNRRDReader ()

	~vtkTeemNRRDReader () override

Static Protected Member Functions
static bool	GetPointType (Nrrd *nrrdTemp, int &pointDataType, int &numOfComponents)

Protected Attributes
std::map< unsigned int, std::string >	AxisLabels

std::map< unsigned int, std::string >	AxisUnits

std::string	CurrentFileName

std::string	DataArrayName

int	DataType

std::string	HeaderKeys

std::map< std::string, std::string >	HeaderKeyValue

vtkSmartPointer< vtkMatrix4x4 >	MeasurementFrameMatrix

Nrrd *	nrrd

vtkSmartPointer< vtkMatrix4x4 >	NRRDWorldToRasMatrix

int	NumberOfComponents

int	PointDataType

vtkSmartPointer< vtkMatrix4x4 >	RasToIjkMatrix

int	ReadStatus

bool	UseNativeOrigin

Detailed Description

Reads Nearly Raw Raster Data files.

Reads Nearly Raw Raster Data files using the nrrdio library as used in ITK

See also: vtkImageReader2

Definition at line 54 of file vtkTeemNRRDReader.h.

Member Typedef Documentation

◆ Superclass

typedef vtkMedicalImageReader2 vtkTeemNRRDReader::Superclass

Definition at line 59 of file vtkTeemNRRDReader.h.

Constructor & Destructor Documentation

◆ vtkTeemNRRDReader()

vtkTeemNRRDReader::vtkTeemNRRDReader ( )

protected

◆ ~vtkTeemNRRDReader()

vtkTeemNRRDReader::~vtkTeemNRRDReader ( )

overrideprotected

Member Function Documentation

◆ AllocateOutputData() [1/2]

vtkImageData* vtkTeemNRRDReader::AllocateOutputData	(	vtkDataObject *	out,
		vtkInformation *	outInfo
	)

override

◆ AllocateOutputData() [2/2]

void vtkTeemNRRDReader::AllocateOutputData	(	vtkImageData *	out,
		vtkInformation *	outInfo,
		int *	uExtent
	)

inlineoverride

Definition at line 243 of file vtkTeemNRRDReader.h.

◆ AllocatePointData()

void vtkTeemNRRDReader::AllocatePointData	(	vtkImageData *	out,
		vtkInformation *	outInfo
	)

◆ CanReadFile()

int vtkTeemNRRDReader::CanReadFile ( const char * filename )

override

is the given file name a NRRD file?

◆ ExecuteDataWithInformation()

void vtkTeemNRRDReader::ExecuteDataWithInformation	(	vtkDataObject *	output,
		vtkInformation *	outInfo
	)

overrideprotected

◆ ExecuteInformation()

void vtkTeemNRRDReader::ExecuteInformation ( )

overrideprotected

◆ GetAxisLabel()

const char* vtkTeemNRRDReader::GetAxisLabel ( unsigned int axis )

Get label for specified axis.

◆ GetAxisUnit()

const char* vtkTeemNRRDReader::GetAxisUnit ( unsigned int axis )

Get unit for specified axis.

◆ GetClassName()

virtual const char* vtkTeemNRRDReader::GetClassName ( )

virtual

◆ GetDataArrayName()

virtual std::string vtkTeemNRRDReader::GetDataArrayName ( )

virtual

◆ GetDataType()

virtual int vtkTeemNRRDReader::GetDataType ( )

virtual

◆ GetDescriptiveName()

const char* vtkTeemNRRDReader::GetDescriptiveName ( )

inlineoverride

A descriptive name for this format

Definition at line 109 of file vtkTeemNRRDReader.h.

◆ GetFileExtensions()

const char* vtkTeemNRRDReader::GetFileExtensions ( )

inlineoverride

Valid extentsions

Definition at line 102 of file vtkTeemNRRDReader.h.

◆ GetHeaderKeys()

const char* vtkTeemNRRDReader::GetHeaderKeys ( )

Get a space separated list of all keys in the header the string is allocated and deleted in this object. This method does not support spaces in key names.

◆ GetHeaderKeysMap()

const std::map<std::string, std::string> vtkTeemNRRDReader::GetHeaderKeysMap ( )

Get a map of keys in the header. Preferred method to use as it supports spaces in key names.

◆ GetHeaderKeysVector()

const std::vector<std::string> vtkTeemNRRDReader::GetHeaderKeysVector ( )

Get a list of keys in the header. Preferred method to use as it supports spaces in key names.

◆ GetHeaderValue()

const char* vtkTeemNRRDReader::GetHeaderValue ( const char * key )

Get a value given a key in the header

◆ GetMeasurementFrameMatrix()

vtkMatrix4x4* vtkTeemNRRDReader::GetMeasurementFrameMatrix ( )

Returns the measurement frame matrix used for tensor valued data.

◆ GetNumberOfComponents()

virtual int vtkTeemNRRDReader::GetNumberOfComponents ( )

virtual

◆ GetPointDataType()

virtual int vtkTeemNRRDReader::GetPointDataType ( )

virtual

◆ GetPointType()

static bool vtkTeemNRRDReader::GetPointType	(	Nrrd *	nrrdTemp,
		int &	pointDataType,
		int &	numOfComponents
	)

staticprotected

◆ GetRasToIjkMatrix()

vtkMatrix4x4* vtkTeemNRRDReader::GetRasToIjkMatrix ( )

Returns a IJK to RAS transformation matrix

◆ GetReadStatus()

virtual int vtkTeemNRRDReader::GetReadStatus ( )

virtual

Report the status of the reading process. If this is different than zero, there have been some error parsing the complete header information.

◆ IsA()

virtual int vtkTeemNRRDReader::IsA ( const char * type )

virtual

◆ IsTypeOf()

static int vtkTeemNRRDReader::IsTypeOf ( const char * type )

static

◆ New()

static vtkTeemNRRDReader* vtkTeemNRRDReader::New ( )

static

◆ NrrdToVTKScalarType()

int vtkTeemNRRDReader::NrrdToVTKScalarType ( const int nrrdPixelType ) const

inline

case nrrdTypeLLong: return LONG ; break; case nrrdTypeULong: return ULONG; break;

Definition at line 158 of file vtkTeemNRRDReader.h.

◆ PrintSelf()

void vtkTeemNRRDReader::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

override

◆ SafeDownCast()

static vtkTeemNRRDReader* vtkTeemNRRDReader::SafeDownCast ( vtkObject * o )

static

◆ SetDataArrayName()

virtual void vtkTeemNRRDReader::SetDataArrayName ( std::string )

virtual

Name of the point data array that voxel data will be stored in. Setting a custom value may be useful for example when probing the image because then the probing result will be stored using this array name. Default value is NRRDImage.

◆ SetDataType()

virtual void vtkTeemNRRDReader::SetDataType ( int )

virtual

Set the data type: int, float....

◆ SetNumberOfComponents()

virtual void vtkTeemNRRDReader::SetNumberOfComponents ( int )

virtual

◆ SetPointDataType()

virtual void vtkTeemNRRDReader::SetPointDataType ( int )

virtual

Point data field type

◆ SetUseNativeOriginOff()

void vtkTeemNRRDReader::SetUseNativeOriginOff ( )

inline

Use image center as origin

Definition at line 145 of file vtkTeemNRRDReader.h.

◆ SetUseNativeOriginOn()

void vtkTeemNRRDReader::SetUseNativeOriginOn ( )

inline

Use image origin from the file

Definition at line 138 of file vtkTeemNRRDReader.h.

◆ tenSpaceDirectionReduce()

int vtkTeemNRRDReader::tenSpaceDirectionReduce	(	Nrrd *	nout,
		const Nrrd *	nin,
		double	SD[9]
	)

protected

◆ VTKToNrrdPixelType()

int vtkTeemNRRDReader::VTKToNrrdPixelType ( const int vtkPixelType ) const

inline

case nrrdTypeLLong: return LONG ; break; case nrrdTypeULong: return ULONG; break;

Definition at line 202 of file vtkTeemNRRDReader.h.

Member Data Documentation

◆ AxisLabels

std::map<unsigned int, std::string> vtkTeemNRRDReader::AxisLabels

protected

Definition at line 272 of file vtkTeemNRRDReader.h.

◆ AxisUnits

std::map<unsigned int, std::string> vtkTeemNRRDReader::AxisUnits

protected

Definition at line 273 of file vtkTeemNRRDReader.h.

◆ CurrentFileName

std::string vtkTeemNRRDReader::CurrentFileName

protected

Definition at line 257 of file vtkTeemNRRDReader.h.

◆ DataArrayName

std::string vtkTeemNRRDReader::DataArrayName

protected

Definition at line 267 of file vtkTeemNRRDReader.h.

◆ DataType

int vtkTeemNRRDReader::DataType

protected

Definition at line 264 of file vtkTeemNRRDReader.h.

◆ HeaderKeys

std::string vtkTeemNRRDReader::HeaderKeys

protected

Definition at line 270 of file vtkTeemNRRDReader.h.

◆ HeaderKeyValue

std::map<std::string, std::string> vtkTeemNRRDReader::HeaderKeyValue

protected

Definition at line 269 of file vtkTeemNRRDReader.h.

◆ MeasurementFrameMatrix

vtkSmartPointer<vtkMatrix4x4> vtkTeemNRRDReader::MeasurementFrameMatrix

protected

Definition at line 254 of file vtkTeemNRRDReader.h.

◆ nrrd

Nrrd* vtkTeemNRRDReader::nrrd

protected

Definition at line 259 of file vtkTeemNRRDReader.h.

◆ NRRDWorldToRasMatrix

vtkSmartPointer<vtkMatrix4x4> vtkTeemNRRDReader::NRRDWorldToRasMatrix

protected

Definition at line 255 of file vtkTeemNRRDReader.h.

◆ NumberOfComponents

int vtkTeemNRRDReader::NumberOfComponents

protected

Definition at line 265 of file vtkTeemNRRDReader.h.

◆ PointDataType

int vtkTeemNRRDReader::PointDataType

protected

Definition at line 263 of file vtkTeemNRRDReader.h.

◆ RasToIjkMatrix

vtkSmartPointer<vtkMatrix4x4> vtkTeemNRRDReader::RasToIjkMatrix

protected

Definition at line 253 of file vtkTeemNRRDReader.h.

◆ ReadStatus

int vtkTeemNRRDReader::ReadStatus

protected

Definition at line 261 of file vtkTeemNRRDReader.h.

◆ UseNativeOrigin

bool vtkTeemNRRDReader::UseNativeOrigin

protected

Definition at line 266 of file vtkTeemNRRDReader.h.

The documentation for this class was generated from the following file:

Libs/vtkTeem/vtkTeemNRRDReader.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Detailed Description

Member Typedef Documentation

◆ Superclass

Constructor & Destructor Documentation

◆ vtkTeemNRRDReader()

◆ ~vtkTeemNRRDReader()

Member Function Documentation

◆ AllocateOutputData() [1/2]

◆ AllocateOutputData() [2/2]

◆ AllocatePointData()

◆ CanReadFile()

◆ ExecuteDataWithInformation()

◆ ExecuteInformation()

◆ GetAxisLabel()

◆ GetAxisUnit()

◆ GetClassName()

◆ GetDataArrayName()

◆ GetDataType()

◆ GetDescriptiveName()

◆ GetFileExtensions()

◆ GetHeaderKeys()

◆ GetHeaderKeysMap()

◆ GetHeaderKeysVector()

◆ GetHeaderValue()

◆ GetMeasurementFrameMatrix()

◆ GetNumberOfComponents()

◆ GetPointDataType()

◆ GetPointType()

◆ GetRasToIjkMatrix()

◆ GetReadStatus()

◆ IsA()

◆ IsTypeOf()

◆ New()

◆ NrrdToVTKScalarType()

◆ PrintSelf()

◆ SafeDownCast()

◆ SetDataArrayName()

◆ SetDataType()

◆ SetNumberOfComponents()

◆ SetPointDataType()

◆ SetUseNativeOriginOff()

◆ SetUseNativeOriginOn()

◆ tenSpaceDirectionReduce()

◆ VTKToNrrdPixelType()

Member Data Documentation

◆ AxisLabels

◆ AxisUnits

◆ CurrentFileName

◆ DataArrayName

◆ DataType

◆ HeaderKeys

◆ HeaderKeyValue

◆ MeasurementFrameMatrix

◆ nrrd

◆ NRRDWorldToRasMatrix

◆ NumberOfComponents

◆ PointDataType

◆ RasToIjkMatrix

◆ ReadStatus

◆ UseNativeOrigin