MRML node for representing diffusion weighted MRI volume. More...

#include <Libs/MRML/Core/vtkMRMLDiffusionImageVolumeNode.h>

Inheritance diagram for vtkMRMLDiffusionImageVolumeNode:

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Collaboration diagram for vtkMRMLDiffusionImageVolumeNode:

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Public Types
typedef vtkMRMLTensorVolumeNode	Superclass

Public Types inherited from vtkMRMLTensorVolumeNode
typedef vtkMRMLScalarVolumeNode	Superclass

Public Types inherited from vtkMRMLScalarVolumeNode
typedef vtkMRMLVolumeNode	Superclass

Public Types inherited from vtkMRMLVolumeNode
enum	{ VoxelVectorTypeUndefined, VoxelVectorTypeSpatial, VoxelVectorTypeColorRGB, VoxelVectorTypeColorRGBA, VoxelVectorType_Last }

enum	{ ImageDataModifiedEvent = 18001 }
	ImageDataModifiedEvent is generated when image data is changed. More...

typedef vtkMRMLDisplayableNode	Superclass

Public Types inherited from vtkMRMLDisplayableNode
enum	{ DisplayModifiedEvent = 17000 }

typedef vtkMRMLTransformableNode	Superclass

Public Types inherited from vtkMRMLTransformableNode
enum	{ TransformModifiedEvent = 15000 }
	TransformModifiedEvent is send when the parent transform is modidied. More...

typedef vtkMRMLStorableNode	Superclass

Public Types inherited from vtkMRMLStorableNode
typedef vtkMRMLNode	Superclass

Public Types inherited from vtkMRMLNode
enum	{ HierarchyModifiedEvent = 16000, IDChangedEvent = 16001, ReferenceAddedEvent, ReferenceModifiedEvent, ReferenceRemovedEvent, ReferencedNodeModifiedEvent }

typedef vtkObject	Superclass

Public Member Functions
vtkMRMLStorageNode *	CreateDefaultStorageNode () override
	Create default storage node or nullptr if does not have one More...

vtkMRMLNode *	CreateNodeInstance () override
	MRMLNode methods. More...

vtkMRMLVolumeNode *	GetBaselineNode ()
	Associated volume MRML node More...

virtual char *	GetBaselineNodeID ()

virtual const char *	GetClassName ()

vtkMRMLDiffusionWeightedVolumeNode *	GetDiffusionWeightedNode ()
	Associated volume MRML node More...

virtual char *	GetDiffusionWeightedNodeID ()

vtkMRMLVolumeNode *	GetMaskNode ()
	Associated volume MRML node More...

virtual char *	GetMaskNodeID ()

const char *	GetNodeTagName () override
	Get node XML tag name (like Volume, Model) More...

virtual int	IsA (const char *type)

void	PrintSelf (ostream &os, vtkIndent indent) override

void	ProcessMRMLEvents (vtkObject , unsigned long, void ) override
	alternative method to propagate events generated in Display nodes More...

void	ReadXMLAttributes (const char **atts) override
	Set node attributes More...

void	SetBaselineNodeID (const char *id)
	String ID of the storage MRML node. More...

void	SetDiffusionWeightedNodeID (const char *id)
	String ID of the display MRML node. More...

void	SetMaskNodeID (const char *id)
	String ID of the display MRML node More...

void	UpdateReferenceID (const char oldID, const char newID) override
	Associated volume MRML node More...

void	UpdateReferences () override
	Finds the storage node and read the data More...

	vtkMRMLCopyContentDefaultMacro (vtkMRMLDiffusionImageVolumeNode)

void	WriteXML (ostream &of, int indent) override
	Write this node's information to a MRML file in XML format. More...

Public Member Functions inherited from vtkMRMLTensorVolumeNode
vtkMRMLStorageNode *	CreateDefaultStorageNode () override
	Create default storage node or nullptr if does not have one More...

vtkMRMLNode *	CreateNodeInstance () override
	MRMLNode methods. More...

void	GetMeasurementFrameMatrix (double mf[3][3])

void	GetMeasurementFrameMatrix (vtkMatrix4x4 *mat)

const char *	GetNodeTagName () override
	Get node XML tag name (like Volume, Model) More...

virtual int	GetOrder ()

void	PrintSelf (ostream &os, vtkIndent indent) override

void	ReadXMLAttributes (const char **atts) override
	Set node attributes More...

void	SetMeasurementFrameMatrix (const double mf[3][3])
	Set the Measurement frame matrix from 3x3 array More...

void	SetMeasurementFrameMatrix (const double xr, const double xa, const double xs, const double yr, const double ya, const double ys, const double zr, const double za, const double zs)

void	SetMeasurementFrameMatrix (vtkMatrix4x4 *mat)
	Set/Get the measurement frame matrix from a vtk 4x4 matrix More...

virtual void	SetOrder (int)

void	UpdateReferenceID (const char oldID, const char newID) override

void	UpdateReferences () override

	vtkMRMLCopyContentMacro (vtkMRMLTensorVolumeNode)

void	WriteXML (ostream &of, int indent) override
	Write this node's information to a MRML file in XML format. More...

Public Member Functions inherited from vtkMRMLScalarVolumeNode
void	CreateDefaultDisplayNodes () override
	Create and observe default display node More...

virtual vtkMRMLScalarVolumeDisplayNode *	GetScalarVolumeDisplayNode ()
	Associated display MRML node More...

virtual vtkCodedEntry *	GetVoxelValueQuantity ()

virtual vtkCodedEntry *	GetVoxelValueUnits ()

void	PrintSelf (ostream &os, vtkIndent indent) override

void	SetVoxelValueQuantity (vtkCodedEntry *)

void	SetVoxelValueUnits (vtkCodedEntry *)

	vtkMRMLCopyContentDefaultMacro (vtkMRMLScalarVolumeNode)

Public Member Functions inherited from vtkMRMLVolumeNode
bool	AddCenteringTransform ()

virtual void	ApplyNonLinearTransform (vtkAbstractTransform *transform)

void	ApplyTransform (vtkAbstractTransform *transform) override

void	ApplyTransformMatrix (vtkMatrix4x4 *transformMatrix) override

bool	CanApplyNonLinearTransforms () const override

void	CopyOrientation (vtkMRMLVolumeNode *node)
	Copy the node's attributes to this object More...

void	CreateDefaultSequenceDisplayNodes () override
	Creates the most appropriate display node class for storing a sequence of these nodes. More...

void	GetBounds (double bounds[6]) override

void	GetIJKToRASDirectionMatrix (vtkMatrix4x4 *mat)

void	GetIJKToRASDirections (double dirs[3][3])

void	GetIJKToRASMatrix (vtkMatrix4x4 *mat)

virtual double	GetImageBackgroundScalarComponentAsDouble (int component)

virtual vtkImageData *	GetImageData ()

virtual vtkAlgorithmOutput *	GetImageDataConnection ()
	Return the input image data pipeline. More...

void	GetIToRASDirection (double dirs[3])

void	GetJToRASDirection (double dirs[3])

void	GetKToRASDirection (double dirs[3])

double	GetMaxSpacing ()
	Utility function that returns the max spacing between the 3 orientations More...

const itk::MetaDataDictionary &	GetMetaDataDictionary () const

double	GetMinSpacing ()
	Utility function that returns the min spacing between the 3 orientations More...

bool	GetModifiedSinceRead () override

virtual void	GetOrigin (double &, double &, double &)

virtual void	GetOrigin (double [3])

virtual double *	GetOrigin ()

void	GetRASBounds (double bounds[6]) override

void	GetRASToIJKMatrix (vtkMatrix4x4 *mat)

void	GetSliceBounds (double bounds[6], vtkMatrix4x4 *rasToSlice, bool useVoxelCenter=false)

virtual void	GetSpacing (double &, double &, double &)

virtual double *	GetSpacing ()

virtual void	GetSpacing (double [3])

virtual vtkMRMLVolumeDisplayNode *	GetVolumeDisplayNode ()
	Associated display MRML node More...

virtual int	GetVoxelVectorType ()

bool	IsCentered ()
	Returns true if the volume center is in the origin. More...

void	PrintSelf (ostream &os, vtkIndent indent) override

void	ProcessMRMLEvents (vtkObject , unsigned long, void ) override
	alternative method to propagate events generated in Display nodes More...

void	ReadXMLAttributes (const char **atts) override
	Read node attributes from XML file More...

virtual void	SetAndObserveImageData (vtkImageData *ImageData)

void	SetIJKToRASDirectionMatrix (vtkMatrix4x4 *mat)

void	SetIJKToRASDirections (double dirs[3][3])

void	SetIJKToRASDirections (double ir, double ia, double is, double jr, double ja, double js, double kr, double ka, double ks)

void	SetIJKToRASMatrix (vtkMatrix4x4 *mat)

virtual void	SetImageDataConnection (vtkAlgorithmOutput *inputPort)

void	SetIToRASDirection (double ir, double ia, double is)

void	SetJToRASDirection (double jr, double ja, double js)

void	SetKToRASDirection (double kr, double ka, double ks)

void	SetMetaDataDictionary (const itk::MetaDataDictionary &)
	Set/Get the ITK MetaDataDictionary More...

virtual void	SetOrigin (double arg1, double arg2, double arg3)

virtual void	SetOrigin (double arg[3])

void	SetRASToIJKMatrix (vtkMatrix4x4 *mat)

virtual void	SetSpacing (double arg1, double arg2, double arg3)

virtual void	SetSpacing (double arg[3])

virtual void	SetVoxelVectorType (int)

void	ShiftImageDataExtentToZeroStart ()

void	UpdateScene (vtkMRMLScene *scene) override
	Finds the storage node and read the data More...

	vtkMRMLCopyContentMacro (vtkMRMLVolumeNode)

void	WriteXML (ostream &of, int indent) override
	Write this node's information to a MRML file in XML format. More...

Public Member Functions inherited from vtkMRMLDisplayableNode
void	AddAndObserveDisplayNodeID (const char *displayNodeID)

void	Copy (vtkMRMLNode *node) override
	Copy the node's attributes to this object More...

virtual int	GetDisplayClassVisibility (const char *nodeClass)

vtkMRMLDisplayNode *	GetDisplayNode ()

const char *	GetDisplayNodeID ()

virtual const char *	GetDisplayNodeReferenceRole ()

virtual int	GetDisplayVisibility ()

vtkMRMLDisplayNode *	GetNthDisplayNode (int n)

const char *	GetNthDisplayNodeID (int n)

int	GetNumberOfDisplayNodes ()

bool	HasDisplayNodeID (const char *displayNodeID)
	Return true if displayNodeID is in the display node ID list. More...

void	PrintSelf (ostream &os, vtkIndent indent) override

void	RemoveAllDisplayNodeIDs ()
	Remove all display node IDs and associated display nodes. More...

void	RemoveNthDisplayNodeID (int n)

void	SetAndObserveDisplayNodeID (const char *displayNodeID)

void	SetAndObserveNthDisplayNodeID (int n, const char *displayNodeID)

virtual void	SetDisplayClassVisibility (const char *nodeClass, int visible)

virtual void	SetDisplayVisibility (int visible)

void	SetSelectable (int) override

virtual void	WriteCLI (std::vector< std::string > &vtkNotUsed(commandLine), std::string vtkNotUsed(prefix), int vtkNotUsed(coordinateSystemFlag)=vtkMRMLStorageNode::CoordinateSystemRAS, int vtkNotUsed(multipleFlag)=1)

Public Member Functions inherited from vtkMRMLTransformableNode
vtkMRMLTransformNode *	GetParentTransformNode ()
	Associated transform MRML node More...

const char *	GetTransformNodeID ()
	Get referenced transform node id. More...

bool	HardenTransform ()

void	PrintSelf (ostream &os, vtkIndent indent) override

bool	SetAndObserveTransformNodeID (const char *transformNodeID)

virtual void	TransformPointFromWorld (const double inWorld[3], double outLocal[3])

virtual void	TransformPointFromWorld (const vtkVector3d &inWorld, vtkVector3d &outLocal)

virtual void	TransformPointToWorld (const double inLocal[3], double outWorld[3])

virtual void	TransformPointToWorld (const vtkVector3d &inLocal, vtkVector3d &outWorld)

Public Member Functions inherited from vtkMRMLStorableNode
void	AddAndObserveStorageNodeID (const char *storageNodeID)

virtual bool	AddDefaultStorageNode (const char *filename=nullptr)

void	Copy (vtkMRMLNode *node) override
	Copy node contents from another node of the same type. Reimplemented to copy default sequence storage node class. More...

virtual vtkMRMLStorageNode *	CreateDefaultSequenceStorageNode ()

virtual std::string	GetDefaultSequenceStorageNodeClassName ()

virtual std::string	GetDefaultStorageNodeClassName (const char *filename=nullptr)

vtkMRMLStorageNode *	GetNthStorageNode (int n)
	Get associated display MRML node More...

const char *	GetNthStorageNodeID (int n)

int	GetNumberOfStorageNodes ()

const char *	GetSlicerDataType ()

vtkMRMLStorageNode *	GetStorageNode ()

const char *	GetStorageNodeID ()

virtual vtkTagTable *	GetUserTagTable ()
	Methods for user-specified metadata. More...

bool	HasStorageNodeID (const char *storageNodeID)
	Return true if storageNodeID is in the storage node ID list. More...

void	PrintSelf (ostream &os, vtkIndent indent) override

void	SetAndObserveNthStorageNodeID (int n, const char *storageNodeID)

void	SetAndObserveStorageNodeID (const char *storageNodeID)
	String ID of the storage MRML node More...

virtual void	SetDefaultSequenceStorageNodeClassName (std::string)

void	SetSlicerDataType (const char *type)

virtual void	StorableModified ()

	vtkMRMLCopyContentMacro (vtkMRMLStorableNode)

Public Member Functions inherited from vtkMRMLNode
vtkMRMLNode *	AddAndObserveNodeReferenceID (const char referenceRole, const char referencedNodeID, vtkIntArray *events=nullptr)
	Add and observe a reference node from this node for a specific referenceRole. More...

vtkMRMLNode *	AddNodeReferenceID (const char referenceRole, const char referencedNodeID)
	Convenience method that adds a referencedNodeID at the end of the list. More...

void	AddNodeReferenceRole (const char referenceRole, const char mrmlAttributeName=nullptr, vtkIntArray *events=nullptr)
	Add a referenceRole. More...

virtual void	AddToSceneOff ()

virtual void	AddToSceneOn ()

virtual void	CopyContent (vtkMRMLNode *node, bool deepCopy=true)
	Copy node contents from another node of the same type. Does not copy node ID, Scene, Name, SingletonTag, HideFromEditors, AddToScene, UndoEnabled, and node references. If deepCopy is set to false then a shallow copy of bulk data (such as image or mesh data) could be made; copying may be faster but the node may share some data with the source node instead of creating an independent copy. More...

virtual void	CopyReferences (vtkMRMLNode *node)
	Copy the references of the node into this. More...

void	CopyWithScene (vtkMRMLNode *node)
	Copy everything (including Scene and ID) from another node of the same type. More...

void	DisableModifiedEventOff ()

void	DisableModifiedEventOn ()

virtual int	EndModify (int previousDisableModifiedEventState)
	End modifying the node. More...

virtual int	GetAddToScene ()
	node added to MRML scene. More...

const char *	GetAttribute (const char *name)
	Get value of a name value pair attribute. More...

std::vector< std::string >	GetAttributeNames ()
	Get all attribute names. More...

void	GetAttributeNames (vtkStringArray *attributeNames)
	Get all attribute names. Python-wrappable version. More...

virtual vtkIntArray *	GetContentModifiedEvents ()

int	GetCustomModifiedEventPending (int eventId)

virtual char *	GetDescription ()

virtual int	GetDisableModifiedEvent ()
	Turn on/off generating InvokeEvent for set macros. More...

virtual int	GetHideFromEditors ()
	Describes if the node is hidden. More...

virtual char *	GetID ()
	ID use by other nodes to reference this node in XML. More...

virtual int	GetInMRMLCallbackFlag ()
	Flags to avoid event loops. More...

virtual int	GetModifiedEventPending ()

virtual char *	GetName ()

vtkMRMLNode *	GetNodeReference (const char *referenceRole)

const char *	GetNodeReferenceID (const char *referenceRole)
	Utility function that returns the first node id for a specific referenceRole. More...

void	GetNodeReferenceIDs (const char referenceRole, std::vector< const char > &referencedNodeIDs)
	Return a list of the referenced node IDs. More...

void	GetNodeReferenceRoles (std::vector< std::string > &roles)

void	GetNodeReferences (const char referenceRole, std::vector< vtkMRMLNode > &nodes)
	Return a list of the referenced nodes. More...

vtkMRMLNode *	GetNthNodeReference (const char *referenceRole, int n)
	Get referenced MRML node for a specific referenceRole. More...

const char *	GetNthNodeReferenceID (const char *referenceRole, int n)
	Return the string of the Nth node ID for a specific reference role. More...

const char *	GetNthNodeReferenceRole (int n)

int	GetNumberOfNodeReferenceRoles ()

int	GetNumberOfNodeReferences (const char *referenceRole)
	Return the number of node IDs for a specific reference role (and nodes as they always have the same size). More...

virtual int	GetSaveWithScene ()
	Save node with MRML scene. More...

virtual vtkMRMLScene *	GetScene ()
	Get the scene this node has been added to. More...

virtual int	GetSelectable ()
	Describes if the node is selectable. More...

virtual int	GetSelected ()
	Get/Set for Selected. More...

virtual char *	GetSingletonTag ()

virtual const char *	GetTypeDisplayName ()

virtual bool	GetUndoEnabled ()

virtual bool	HasCopyContent () const
	Returns true if the class supports deep and shallow copying node content. More...

bool	HasNodeReferenceID (const char referenceRole, const char referencedNodeID)
	Return true if referencedNodeID is in the node ID list for a specific referenceRole. More...

virtual void	HideFromEditorsOff ()

virtual void	HideFromEditorsOn ()

virtual void	InvokeCustomModifiedEvent (int eventId, void *callData=nullptr)
	This method allows the node to compress events. More...

virtual int	InvokePendingModifiedEvent ()
	Invokes any modified events that are `pending`. More...

bool	IsSingleton ()

void	Modified () override
	Customized version of Modified() allowing to compress vtkCommand::ModifiedEvent. More...

virtual void	OnNodeAddedToScene ()

void	PrintSelf (ostream &os, vtkIndent indent) override

virtual void	ProcessChildNode (vtkMRMLNode *)
	Set dependencies between this node and a child node when parsing XML file. More...

void	RemoveAttribute (const char *name)
	Remove attribute with the specified name. More...

void	RemoveNodeReferenceIDs (const char *referenceRole)
	Remove all node IDs and associated nodes for a specific referenceRole. More...

void	RemoveNthNodeReferenceID (const char *referenceRole, int n)
	Convenience method that removes the Nth node ID from the list. More...

virtual void	Reset (vtkMRMLNode *defaultNode)
	Reset node attributes to the initial state as defined in the constructor or the passed default node. More...

virtual void	SaveWithSceneOff ()

virtual void	SaveWithSceneOn ()

virtual void	SelectableOff ()

virtual void	SelectableOn ()

virtual void	SelectedOff ()

virtual void	SelectedOn ()

virtual void	SetAddToScene (int)

void	SetAddToSceneNoModify (int value)

vtkMRMLNode *	SetAndObserveNodeReferenceID (const char referenceRole, const char referencedNodeID, vtkIntArray *events=nullptr)
	Set and observe a reference node from this node for a specific referenceRole. More...

vtkMRMLNode *	SetAndObserveNthNodeReferenceID (const char referenceRole, int n, const char referencedNodeID, vtkIntArray *events=nullptr)
	Set and observe the Nth node ID for a specific reference role. More...

void	SetAttribute (const char name, const char value)
	Set a name value pair attribute. More...

virtual void	SetDescription (const char *)
	Text description of this node, to be set by the user. More...

void	SetDisableModifiedEvent (int onOff)

virtual void	SetHideFromEditors (int)

void	SetInMRMLCallbackFlag (int flag)

virtual void	SetName (const char *)
	Name of this node, to be set by the user. More...

vtkMRMLNode *	SetNodeReferenceID (const char referenceRole, const char referencedNodeID)
	Set a reference to a node with specified nodeID from this node for a specific referenceRole. More...

vtkMRMLNode *	SetNthNodeReferenceID (const char referenceRole, int n, const char referencedNodeID)
	Set a N-th reference from this node with specified referencedNodeID for a specific referenceRole. More...

virtual void	SetSaveWithScene (int)

virtual void	SetScene (vtkMRMLScene *scene)
	This method is for internal use only. Use AddNode method of vtkMRMLScene to add a node to the scene. More...

virtual void	SetSceneReferences ()
	Update the references of the node to the scene. More...

virtual void	SetSelected (int)

void	SetSingletonOff ()

void	SetSingletonOn ()

virtual void	SetSingletonTag (const char *)
	Tag that make this node a singleton in the scene. More...

virtual void	SetUndoEnabled (bool)

virtual int	StartModify ()
	Start modifying the node. Disable Modify events. More...

virtual void	UndoEnabledOff ()

virtual void	UndoEnabledOn ()

const char *	URLDecodeString (const char *inString)
	Decode a URL string. More...

const char *	URLEncodeString (const char *inString)
	Encode a URL string. More...

virtual void	WriteNodeBodyXML (ostream &of, int indent)
	Write this node's body to a MRML file in XML format. More...

std::string	XMLAttributeDecodeString (const std::string &inString)
	Decode an XML attribute string. More...

std::string	XMLAttributeEncodeString (const std::string &inString)
	Encode an XML attribute string (replaces special characters by code sequences) More...

Static Public Member Functions
static int	IsTypeOf (const char *type)

static vtkMRMLDiffusionImageVolumeNode *	New ()

static vtkMRMLDiffusionImageVolumeNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLTensorVolumeNode
static int	IsTypeOf (const char *type)

static vtkMRMLTensorVolumeNode *	New ()

static vtkMRMLTensorVolumeNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLScalarVolumeNode
static void	CreateNoneNode (vtkMRMLScene *scene)
	Make a 'None' volume node with blank image data More...

static int	IsTypeOf (const char *type)

static vtkMRMLScalarVolumeNode *	New ()

static vtkMRMLScalarVolumeNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLVolumeNode
static bool	ComputeIJKToRASFromScanOrder (const char order, const double spacing, const int dims, bool centerImage, vtkMatrix4x4 IJKToRAS)
	RAS->IJK Matrix Calculation. More...

static const char *	ComputeScanOrderFromIJKToRAS (vtkMatrix4x4 *IJKToRAS)

static const char *	GetVoxelVectorTypeAsString (int id)
	Convert between voxel type ID and name. More...

static int	GetVoxelVectorTypeFromString (const char *name)

static int	IsTypeOf (const char *type)

static vtkMRMLVolumeNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLDisplayableNode
static int	IsTypeOf (const char *type)

static vtkMRMLDisplayableNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLTransformableNode
static int	IsTypeOf (const char *type)

static vtkMRMLTransformableNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLStorableNode
static int	IsTypeOf (const char *type)

static vtkMRMLStorableNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLNode
static int	IsTypeOf (const char *type)

static vtkMRMLNode *	SafeDownCast (vtkObject *o)

Protected Member Functions
void	operator= (const vtkMRMLDiffusionImageVolumeNode &)

	vtkMRMLDiffusionImageVolumeNode ()

	vtkMRMLDiffusionImageVolumeNode (const vtkMRMLDiffusionImageVolumeNode &)

	~vtkMRMLDiffusionImageVolumeNode () override

Protected Member Functions inherited from vtkMRMLTensorVolumeNode
void	operator= (const vtkMRMLTensorVolumeNode &)

	vtkMRMLTensorVolumeNode ()

	vtkMRMLTensorVolumeNode (const vtkMRMLTensorVolumeNode &)

	~vtkMRMLTensorVolumeNode () override

Protected Member Functions inherited from vtkMRMLScalarVolumeNode
void	operator= (const vtkMRMLScalarVolumeNode &)

	vtkMRMLScalarVolumeNode ()

	vtkMRMLScalarVolumeNode (const vtkMRMLScalarVolumeNode &)

	~vtkMRMLScalarVolumeNode () override

Protected Member Functions inherited from vtkMRMLVolumeNode
virtual void	GetBoundsInternal (double bounds[6], vtkMatrix4x4 *rasToSlice, bool useTransform, bool useVoxelCenter=false)

void	GetCenterPositionRAS (double *centerPositionRAS, bool useParentTransform=true)

virtual int	GetResamplingInterpolationMode ()

void	OnNodeReferenceAdded (vtkMRMLNodeReference *reference) override
	Called when a node reference ID is added (list size increased). More...

void	OnNodeReferenceModified (vtkMRMLNodeReference *reference) override
	Called when a node reference ID is modified. More...

void	operator= (const vtkMRMLVolumeNode &)

void	SetImageDataToDisplayNode (vtkMRMLVolumeDisplayNode *displayNode)

void	SetImageDataToDisplayNodes ()
	Set the image data pipeline to all the display nodes. More...

virtual void	UpdateDisplayNodeImageData (vtkMRMLDisplayNode *dnode)

	vtkMRMLVolumeNode ()

	vtkMRMLVolumeNode (const vtkMRMLVolumeNode &)

	~vtkMRMLVolumeNode () override

Protected Member Functions inherited from vtkMRMLDisplayableNode
virtual const char *	GetDisplayNodeReferenceMRMLAttributeName ()

void	OnNodeReferenceRemoved (vtkMRMLNodeReference *reference) override
	Called after a node reference ID is removed (list size decreased). More...

void	operator= (const vtkMRMLDisplayableNode &)

	vtkMRMLDisplayableNode ()

	vtkMRMLDisplayableNode (const vtkMRMLDisplayableNode &)

	~vtkMRMLDisplayableNode () override

Protected Member Functions inherited from vtkMRMLTransformableNode
virtual const char *	GetTransformNodeReferenceMRMLAttributeName ()

virtual const char *	GetTransformNodeReferenceRole ()

void	OnNodeReferenceRemoved (vtkMRMLNodeReference *reference) override
	Called after a node reference ID is removed (list size decreased). More...

virtual void	OnTransformNodeReferenceChanged (vtkMRMLTransformNode *transformNode)
	Called when transform node reference added/modified/removed. More...

void	operator= (const vtkMRMLTransformableNode &)

	vtkMRMLTransformableNode ()

	vtkMRMLTransformableNode (const vtkMRMLTransformableNode &)

	~vtkMRMLTransformableNode () override

Protected Member Functions inherited from vtkMRMLStorableNode
virtual const char *	GetStorageNodeReferenceMRMLAttributeName ()

virtual const char *	GetStorageNodeReferenceRole ()

virtual vtkTimeStamp	GetStoredTime ()

void	operator= (const vtkMRMLStorableNode &)

	vtkMRMLStorableNode ()

	vtkMRMLStorableNode (const vtkMRMLStorableNode &)

	~vtkMRMLStorableNode () override

Protected Member Functions inherited from vtkMRMLNode
virtual const char *	GetMRMLAttributeNameFromReferenceRole (const char *refRole)
	Return the mrml attribute name (if found) associated with a reference role. Return 0 otherwise. More...

virtual const char *	GetReferenceRoleFromMRMLAttributeName (const char *attName)
	Return the reference role (if found) associated with the attribute name found in a MRML scene file. Return 0 otherwise. More...

virtual char *	GetTempURLString ()

void	GetUpdatedReferencedNodeEventList (int &oldReferencedNodeUseCount, int &newReferencedNodeUseCount, vtkIntArray oldConsolidatedEventList, vtkIntArray newConsolidatedEventList, vtkMRMLNode oldReferencedNode, vtkMRMLNode newReferencedNode, vtkMRMLNodeReference referenceToIgnore, vtkIntArray newEvents)

virtual void	InvalidateNodeReferences ()

virtual bool	IsReferenceRoleGeneric (const char *refRole)
	Return true if the reference role is generic (ends with '/') or false otherwise. More...

void	operator= (const vtkMRMLNode &)

void	ParseReferencesAttribute (const char *attValue, std::set< std::string > &references)

void	RemoveInvalidReferences (const std::set< std::string > &validNodeIDs)

virtual void	SetTempURLString (const char *)
	Get/Set the string used to manage encoding/decoding of strings/URLs with special characters. More...

vtkMRMLNode *	UpdateNodeReferenceEventObserver (vtkMRMLNode oldReferencedNode, vtkMRMLNode newReferencedNode, vtkIntArray newEvents, vtkMRMLNodeReference referenceToIgnore)

virtual void	UpdateNodeReferences (const char *referenceRole=nullptr)

virtual void	UpdateNthNodeReference (const char *referenceRole, int n)

	vtkMRMLNode ()

	vtkMRMLNode (const vtkMRMLNode &)

	~vtkMRMLNode () override
	critical to have a virtual destructor! More...

Protected Attributes
char *	BaselineNodeID

char *	DiffusionWeightedNodeID

char *	MaskNodeID

Protected Attributes inherited from vtkMRMLTensorVolumeNode
double	MeasurementFrameMatrix [3][3]

int	Order

Protected Attributes inherited from vtkMRMLScalarVolumeNode
vtkCodedEntry *	VoxelValueQuantity {nullptr}

vtkCodedEntry *	VoxelValueUnits {nullptr}

Protected Attributes inherited from vtkMRMLVolumeNode
vtkEventForwarderCommand *	DataEventForwarder

itk::MetaDataDictionary	Dictionary

double	IJKToRASDirections [3][3]
	these are unit length direction cosines More...

vtkAlgorithmOutput *	ImageDataConnection

double	Origin [3]

double	Spacing [3]
	these are mappings to mm space More...

int	VoxelVectorType

Protected Attributes inherited from vtkMRMLStorableNode
std::string	DefaultSequenceStorageNodeClassName

std::string	SlicerDataType

vtkTimeStamp	StorableModifiedTime

vtkTagTable *	UserTagTable

Protected Attributes inherited from vtkMRMLNode
int	AddToScene {1}

AttributesType	Attributes

vtkIntArray *	ContentModifiedEvents

char *	Description {nullptr}

int	HideFromEditors {0}

char *	ID {nullptr}

int	InMRMLCallbackFlag {0}
	Flag to avoid event loops More...

vtkCallbackCommand *	MRMLCallbackCommand
	Holders for MRML callbacks. More...

vtkObserverManager *	MRMLObserverManager

char *	Name {nullptr}

NodeReferenceEventsType	NodeReferenceEvents

std::map< std::string, std::string >	NodeReferenceMRMLAttributeNames

NodeReferencesType	NodeReferences

int	SaveWithScene {true}

vtkWeakPointer< vtkMRMLScene >	Scene

int	Selectable {1}

int	Selected {0}

bool	UndoEnabled {false}

Additional Inherited Members
Protected Types inherited from vtkMRMLNode
typedef std::map< std::string, std::string >	AttributesType

typedef std::map< std::string, vtkSmartPointer< vtkIntArray > >	NodeReferenceEventsType

typedef std::vector< vtkSmartPointer< vtkMRMLNodeReference > >	NodeReferenceListType

typedef std::map< std::string, NodeReferenceListType >	NodeReferencesType

Static Protected Member Functions inherited from vtkMRMLNode
static void	MRMLCallback (vtkObject caller, unsigned long eid, void clientData, void *callData)

Static Protected Attributes inherited from vtkMRMLDisplayableNode
static const char *	DisplayNodeReferenceMRMLAttributeName

static const char *	DisplayNodeReferenceRole

Static Protected Attributes inherited from vtkMRMLTransformableNode
static const char *	TransformNodeReferenceMRMLAttributeName

static const char *	TransformNodeReferenceRole

Static Protected Attributes inherited from vtkMRMLStorableNode
static const char *	StorageNodeReferenceMRMLAttributeName

static const char *	StorageNodeReferenceRole

Detailed Description

MRML node for representing diffusion weighted MRI volume.

Diffusion Weighted Volume nodes describe data sets that encode diffusion weighted images. These images are the basis for computing the diffusion tensor. The node is a container for the necessary information to interpert DW images:

Gradient information.
B value for each gradient.
Measurement frame that relates the coordinate system where the gradients are given to RAS.

Definition at line 30 of file vtkMRMLDiffusionImageVolumeNode.h.

Member Typedef Documentation

◆ Superclass

typedef vtkMRMLTensorVolumeNode vtkMRMLDiffusionImageVolumeNode::Superclass

Definition at line 34 of file vtkMRMLDiffusionImageVolumeNode.h.

Constructor & Destructor Documentation

◆ vtkMRMLDiffusionImageVolumeNode() [1/2]

vtkMRMLDiffusionImageVolumeNode::vtkMRMLDiffusionImageVolumeNode ( )

protected

◆ ~vtkMRMLDiffusionImageVolumeNode()

vtkMRMLDiffusionImageVolumeNode::~vtkMRMLDiffusionImageVolumeNode ( )

overrideprotected

◆ vtkMRMLDiffusionImageVolumeNode() [2/2]

vtkMRMLDiffusionImageVolumeNode::vtkMRMLDiffusionImageVolumeNode ( const vtkMRMLDiffusionImageVolumeNode & )

protected

Member Function Documentation

◆ CreateDefaultStorageNode()

vtkMRMLStorageNode* vtkMRMLDiffusionImageVolumeNode::CreateDefaultStorageNode ( )

inlineoverridevirtual

Create default storage node or nullptr if does not have one

Reimplemented from vtkMRMLStorableNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeNode.

Definition at line 108 of file vtkMRMLDiffusionImageVolumeNode.h.

◆ CreateNodeInstance()

vtkMRMLNode* vtkMRMLDiffusionImageVolumeNode::CreateNodeInstance ( )

overridevirtual

MRMLNode methods.

Implements vtkMRMLVolumeNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeNode.

◆ GetBaselineNode()

vtkMRMLVolumeNode* vtkMRMLDiffusionImageVolumeNode::GetBaselineNode ( )

Associated volume MRML node

◆ GetBaselineNodeID()

virtual char* vtkMRMLDiffusionImageVolumeNode::GetBaselineNodeID ( )

virtual

◆ GetClassName()

virtual const char* vtkMRMLDiffusionImageVolumeNode::GetClassName ( )

virtual

Reimplemented from vtkMRMLTensorVolumeNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeNode.

◆ GetDiffusionWeightedNode()

vtkMRMLDiffusionWeightedVolumeNode* vtkMRMLDiffusionImageVolumeNode::GetDiffusionWeightedNode ( )

Associated volume MRML node

◆ GetDiffusionWeightedNodeID()

virtual char* vtkMRMLDiffusionImageVolumeNode::GetDiffusionWeightedNodeID ( )

virtual

◆ GetMaskNode()

vtkMRMLVolumeNode* vtkMRMLDiffusionImageVolumeNode::GetMaskNode ( )

Associated volume MRML node

◆ GetMaskNodeID()

virtual char* vtkMRMLDiffusionImageVolumeNode::GetMaskNodeID ( )

virtual

◆ GetNodeTagName()

const char* vtkMRMLDiffusionImageVolumeNode::GetNodeTagName ( )

inlineoverridevirtual

Get node XML tag name (like Volume, Model)

Implements vtkMRMLVolumeNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeNode.

Definition at line 53 of file vtkMRMLDiffusionImageVolumeNode.h.

◆ IsA()

virtual int vtkMRMLDiffusionImageVolumeNode::IsA ( const char * type )

virtual

Reimplemented from vtkMRMLTensorVolumeNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeNode.

◆ IsTypeOf()

static int vtkMRMLDiffusionImageVolumeNode::IsTypeOf ( const char * type )

static

◆ New()

static vtkMRMLDiffusionImageVolumeNode* vtkMRMLDiffusionImageVolumeNode::New ( )

static

◆ operator=()

void vtkMRMLDiffusionImageVolumeNode::operator= ( const vtkMRMLDiffusionImageVolumeNode & )

protected

◆ PrintSelf()

void vtkMRMLDiffusionImageVolumeNode::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

override

◆ ProcessMRMLEvents()

void vtkMRMLDiffusionImageVolumeNode::ProcessMRMLEvents	(	vtkObject *	,
		unsigned	long,
		void *
	)

overridevirtual

alternative method to propagate events generated in Display nodes

Reimplemented from vtkMRMLNode.

◆ ReadXMLAttributes()

void vtkMRMLDiffusionImageVolumeNode::ReadXMLAttributes ( const char ** atts )

overridevirtual

Set node attributes

Reimplemented from vtkMRMLNode.

◆ SafeDownCast()

static vtkMRMLDiffusionImageVolumeNode* vtkMRMLDiffusionImageVolumeNode::SafeDownCast ( vtkObject * o )

static

◆ SetBaselineNodeID()

void vtkMRMLDiffusionImageVolumeNode::SetBaselineNodeID ( const char * id )

String ID of the storage MRML node.

Description:

◆ SetDiffusionWeightedNodeID()

void vtkMRMLDiffusionImageVolumeNode::SetDiffusionWeightedNodeID ( const char * id )

String ID of the display MRML node.

Description:

◆ SetMaskNodeID()

void vtkMRMLDiffusionImageVolumeNode::SetMaskNodeID ( const char * id )

String ID of the display MRML node

◆ UpdateReferenceID()

void vtkMRMLDiffusionImageVolumeNode::UpdateReferenceID	(	const char *	oldID,
		const char *	newID
	)

overridevirtual

Associated volume MRML node

Update the stored reference to another node in the scene

Reimplemented from vtkMRMLNode.

◆ UpdateReferences()

void vtkMRMLDiffusionImageVolumeNode::UpdateReferences ( )

overridevirtual

Finds the storage node and read the data

Updates this node if it depends on other nodes when the node is deleted in the scene

Reimplemented from vtkMRMLNode.

◆ vtkMRMLCopyContentDefaultMacro()

vtkMRMLDiffusionImageVolumeNode::vtkMRMLCopyContentDefaultMacro ( vtkMRMLDiffusionImageVolumeNode )

Copy node content (excludes basic data, such as name and node references).

See also: vtkMRMLNode::CopyContent

◆ WriteXML()

void vtkMRMLDiffusionImageVolumeNode::WriteXML	(	ostream &	of,
		int	indent
	)

overridevirtual

Write this node's information to a MRML file in XML format.

Reimplemented from vtkMRMLNode.

Member Data Documentation

◆ BaselineNodeID

char* vtkMRMLDiffusionImageVolumeNode::BaselineNodeID

protected

Definition at line 119 of file vtkMRMLDiffusionImageVolumeNode.h.

◆ DiffusionWeightedNodeID

char* vtkMRMLDiffusionImageVolumeNode::DiffusionWeightedNodeID

protected

Definition at line 121 of file vtkMRMLDiffusionImageVolumeNode.h.

◆ MaskNodeID

char* vtkMRMLDiffusionImageVolumeNode::MaskNodeID

protected

Definition at line 120 of file vtkMRMLDiffusionImageVolumeNode.h.

The documentation for this class was generated from the following file:

Libs/MRML/Core/vtkMRMLDiffusionImageVolumeNode.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ Superclass

Constructor & Destructor Documentation

◆ vtkMRMLDiffusionImageVolumeNode() [1/2]

◆ ~vtkMRMLDiffusionImageVolumeNode()

◆ vtkMRMLDiffusionImageVolumeNode() [2/2]

Member Function Documentation

◆ CreateDefaultStorageNode()

◆ CreateNodeInstance()

◆ GetBaselineNode()

◆ GetBaselineNodeID()

◆ GetClassName()

◆ GetDiffusionWeightedNode()

◆ GetDiffusionWeightedNodeID()

◆ GetMaskNode()

◆ GetMaskNodeID()

◆ GetNodeTagName()

◆ IsA()

◆ IsTypeOf()

◆ New()

◆ operator=()

◆ PrintSelf()

◆ ProcessMRMLEvents()

◆ ReadXMLAttributes()

◆ SafeDownCast()

◆ SetBaselineNodeID()

◆ SetDiffusionWeightedNodeID()

◆ SetMaskNodeID()

◆ UpdateReferenceID()

◆ UpdateReferences()

◆ vtkMRMLCopyContentDefaultMacro()

◆ WriteXML()

Member Data Documentation

◆ BaselineNodeID

◆ DiffusionWeightedNodeID

◆ MaskNodeID