Slicer  4.8
Slicer is a multi-platform, free and open source software package for visualization and medical image computing
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vtkMRMLTransformStorageNode Class Reference

MRML node for transform storage on disk. More...

#include <Libs/MRML/Core/vtkMRMLTransformStorageNode.h>

Inheritance diagram for vtkMRMLTransformStorageNode:
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Collaboration diagram for vtkMRMLTransformStorageNode:
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Public Types

typedef vtkMRMLStorageNode Superclass
 
- Public Types inherited from vtkMRMLStorageNode
enum  {
  Idle, Pending, Scheduled, Transferring,
  TransferDone, Cancelled
}
 
typedef vtkMRMLNode Superclass
 
- Public Types inherited from vtkMRMLNode
enum  {
  HierarchyModifiedEvent = 16000, IDChangedEvent = 16001, ReferenceAddedEvent, ReferenceModifiedEvent,
  ReferenceRemovedEvent, ReferencedNodeModifiedEvent
}
 
typedef vtkObject Superclass
 

Public Member Functions

virtual bool CanReadInReferenceNode (vtkMRMLNode *refNode) VTK_OVERRIDE
 Support only transform nodes. More...
 
virtual void Copy (vtkMRMLNode *node) VTK_OVERRIDE
 Copy the node's attributes to this object. More...
 
virtual vtkMRMLNodeCreateNodeInstance () VTK_OVERRIDE
 Create instance of the default node. Like New only virtual. More...
 
virtual const char * GetClassName ()
 
virtual const char * GetNodeTagName () VTK_OVERRIDE
 Get node XML tag name (like Storage, Transform) More...
 
virtual int GetPreferITKv3CompatibleTransforms ()
 
virtual void InitializeSupportedWriteFileTypes () VTK_OVERRIDE
 Initialize all the supported write file types. More...
 
virtual int IsA (const char *type)
 
virtual void PreferITKv3CompatibleTransformsOff ()
 
virtual void PreferITKv3CompatibleTransformsOn ()
 
void PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE
 
virtual void ReadXMLAttributes (const char **atts) VTK_OVERRIDE
 Set node attributes. More...
 
virtual void SetPreferITKv3CompatibleTransforms (int)
 
virtual void WriteXML (ostream &of, int indent) VTK_OVERRIDE
 Write this node's information to a MRML file in XML format. More...
 
- Public Member Functions inherited from vtkMRMLStorageNode
unsigned int AddFileName (const char *fileName)
 Add in another file name to the list of file names. More...
 
unsigned int AddURI (const char *uri)
 Add in another URI to the list of URI's. More...
 
virtual bool CanWriteFromReferenceNode (vtkMRMLNode *refNode)
 
virtual void ConfigureForDataExchange ()
 
int FileNameIsInList (const char *fileName)
 
const char * GetAbsoluteFilePath (const char *inputPath)
 
virtual const char * GetDefaultWriteFileExtension ()
 Return default file extension for writing. More...
 
virtual void GetFileExtensionsFromFileTypes (vtkStringArray *inputFileTypes, vtkStringArray *outputFileExtensions)
 
virtual char * GetFileName ()
 
std::string GetFileNameWithoutExtension (const char *fileName=NULL)
 
std::string GetFullNameFromFileName ()
 
std::string GetFullNameFromNthFileName (int n)
 
const char * GetNthFileName (int n) const
 return the nth file name, null if doesn't exist More...
 
const char * GetNthURI (int n)
 Get the nth URI from the list of URI's. More...
 
int GetNumberOfFileNames () const
 See how many file names were generated during ExecuteInformation. More...
 
int GetNumberOfURIs ()
 Return how many uri names this storage node holds in it's list. More...
 
virtual int GetReadState ()
 Get/Set the state of reading. More...
 
const char * GetReadStateAsString ()
 
const char * GetStateAsString (int state)
 
vtkTimeStamp GetStoredTime ()
 
virtual std::string GetSupportedFileExtension (const char *fileName=NULL, bool includeReadable=true, bool includeWriteable=true)
 
virtual vtkStringArray * GetSupportedReadFileTypes ()
 
virtual vtkStringArray * GetSupportedWriteFileTypes ()
 
virtual char * GetTempFileName ()
 
virtual char * GetURI ()
 
virtual vtkURIHandlerGetURIHandler ()
 
virtual int GetUseCompression ()
 
virtual char * GetWriteFileFormat ()
 
virtual int GetWriteState ()
 Get/Set the state of writing. More...
 
const char * GetWriteStateAsString ()
 
void InvalidateFile ()
 
int IsFilePathRelative (const char *filepath)
 
void PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE
 
virtual void ProcessMRMLEvents (vtkObject *caller, unsigned long event, void *callData) VTK_OVERRIDE
 Propagate Progress Event generated in ReadData. More...
 
virtual int ReadData (vtkMRMLNode *refNode, bool temporaryFile=false)
 
void ResetFileNameList ()
 Clear the array of file names. More...
 
void ResetNthFileName (int n, const char *fileName)
 Set the nth file in FileNameList, checks that it is already defined. More...
 
void ResetNthURI (int n, const char *uri)
 Set the nth uri in URIList, checks that it is already defined. More...
 
void ResetURIList ()
 Clear the array of URIs. More...
 
void SetDataDirectory (const char *dataDirName)
 Set a new data directory for all files. More...
 
virtual void SetDefaultWriteFileExtension (const char *ext)
 
virtual void SetFileName (const char *)
 
virtual void SetReadState (int)
 
void SetReadStateCancelled ()
 
void SetReadStateIdle ()
 
void SetReadStatePending ()
 
void SetReadStateScheduled ()
 
void SetReadStateTransferDone ()
 
void SetReadStateTransferring ()
 
virtual void SetTempFileName (const char *)
 A temporary file name used to calculate absolute paths. More...
 
virtual void SetURI (const char *)
 Location of the remote copy of this file. More...
 
virtual void SetURIHandler (vtkURIHandler *uriHandler)
 
void SetURIPrefix (const char *uriPrefix)
 Set a new URI base for all URI's. More...
 
virtual void SetUseCompression (int)
 
virtual void SetWriteFileFormat (const char *)
 Allow to set specific file format that this node will write output. More...
 
virtual void SetWriteState (int)
 
void SetWriteStateCancelled ()
 
void SetWriteStateIdle ()
 
void SetWriteStatePending ()
 
void SetWriteStateScheduled ()
 
void SetWriteStateTransferDone ()
 
void SetWriteStateTransferring ()
 
virtual int SupportedFileType (const char *fileName)
 
virtual void UseCompressionOff ()
 
virtual void UseCompressionOn ()
 Use compression on write. More...
 
virtual int WriteData (vtkMRMLNode *refNode)
 
- Public Member Functions inherited from vtkMRMLNode
vtkMRMLNodeAddAndObserveNodeReferenceID (const char *referenceRole, const char *referencedNodeID, vtkIntArray *events=0)
 Add and observe a reference node from this node for a specific referenceRole. More...
 
vtkMRMLNodeAddNodeReferenceID (const char *referenceRole, const char *referencedNodeID)
 Convenience method that adds a referencedNodeID at the end of the list. More...
 
void AddNodeReferenceRole (const char *referenceRole, const char *mrmlAttributeName=0, vtkIntArray *events=0)
 Add a referenceRole. More...
 
virtual void AddToSceneOff ()
 
virtual void AddToSceneOn ()
 
virtual void CopyReferences (vtkMRMLNode *node)
 Copy the references of the node into this. More...
 
void CopyWithoutModifiedEvent (vtkMRMLNode *node)
 
void CopyWithScene (vtkMRMLNode *node)
 Copy everything (including Scene and ID) from another node of the same type. More...
 
void CopyWithSceneWithSingleModifiedEvent (vtkMRMLNode *node)
 Copy everything (including Scene and ID) from another node of the same type. More...
 
void CopyWithSingleModifiedEvent (vtkMRMLNode *node)
 
void DisableModifiedEventOff ()
 
void DisableModifiedEventOn ()
 
virtual int EndModify (int previousDisableModifiedEventState)
 End modifying the node. More...
 
virtual int GetAddToScene ()
 node added to MRML scene. More...
 
const char * GetAttribute (const char *name)
 Get value of a name value pair attribute. More...
 
std::vector< std::string > GetAttributeNames ()
 Get all attribute names. More...
 
void GetAttributeNames (vtkStringArray *attributeNames)
 Get all attribute names. Python-wrappable version. More...
 
virtual char * GetDescription ()
 
virtual int GetDisableModifiedEvent ()
 Turn on/off generating InvokeEvent for set macros. More...
 
virtual int GetHideFromEditors ()
 Describes if the node is hidden. More...
 
virtual char * GetID ()
 ID use by other nodes to reference this node in XML. More...
 
virtual int GetInMRMLCallbackFlag ()
 Flags to avoid event loops. More...
 
virtual int GetModifiedEventPending ()
 
virtual char * GetName ()
 
vtkMRMLNodeGetNodeReference (const char *referenceRole)
 
const char * GetNodeReferenceID (const char *referenceRole)
 Utility function that returns the first node id for a specific referenceRole. More...
 
void GetNodeReferenceIDs (const char *referenceRole, std::vector< const char *> &referencedNodeIDs)
 Return a list of the referenced node IDs. More...
 
void GetNodeReferenceRoles (std::vector< std::string > &roles)
 
void GetNodeReferences (const char *referenceRole, std::vector< vtkMRMLNode *> &nodes)
 Return a list of the referenced nodes. More...
 
vtkMRMLNodeGetNthNodeReference (const char *referenceRole, int n)
 Get referenced MRML node for a specific referenceRole. More...
 
const char * GetNthNodeReferenceID (const char *referenceRole, int n)
 Return the string of the Nth node ID for a specific reference role. More...
 
const char * GetNthNodeReferenceRole (int n)
 
int GetNumberOfNodeReferenceRoles ()
 
int GetNumberOfNodeReferences (const char *referenceRole)
 Return the number of node IDs for a specific reference role (and nodes as they always have the same size). More...
 
virtual int GetSaveWithScene ()
 Save node with MRML scene. More...
 
virtual vtkMRMLSceneGetScene ()
 Only the scene can set itself to the node. More...
 
virtual int GetSelectable ()
 Describes if the node is selectable. More...
 
virtual int GetSelected ()
 Get/Set for Selected. More...
 
virtual char * GetSingletonTag ()
 
bool HasNodeReferenceID (const char *referenceRole, const char *referencedNodeID)
 Return true if referencedNodeID is in the node ID list for a specific referenceRole. More...
 
virtual void HideFromEditorsOff ()
 
virtual void HideFromEditorsOn ()
 
virtual void InvokeCustomModifiedEvent (int eventId, void *callData=NULL)
 This method allows the node to compress events. More...
 
virtual int InvokePendingModifiedEvent ()
 Invokes any modified events that are pending. More...
 
bool IsSingleton ()
 
virtual void Modified () VTK_OVERRIDE
 Customized version of Modified() allowing to compress vtkCommand::ModifiedEvent. More...
 
virtual void OnNodeAddedToScene ()
 
void PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE
 
virtual void ProcessChildNode (vtkMRMLNode *)
 Set dependencies between this node and a child node when parsing XML file. More...
 
void RemoveAttribute (const char *name)
 Remove attribute with the specified name. More...
 
void RemoveNodeReferenceIDs (const char *referenceRole)
 Remove all node IDs and associated nodes for a specific referenceRole. More...
 
void RemoveNthNodeReferenceID (const char *referenceRole, int n)
 Convenience method that removes the Nth node ID from the list. More...
 
virtual void Reset (vtkMRMLNode *defaultNode)
 Reset node attributes to the initial state as defined in the constructor or the passed default node. More...
 
virtual void SaveWithSceneOff ()
 
virtual void SaveWithSceneOn ()
 
virtual void SelectableOff ()
 
virtual void SelectableOn ()
 
virtual void SelectedOff ()
 
virtual void SelectedOn ()
 
virtual void SetAddToScene (int)
 
void SetAddToSceneNoModify (int value)
 
vtkMRMLNodeSetAndObserveNodeReferenceID (const char *referenceRole, const char *referencedNodeID, vtkIntArray *events=0)
 Set and observe a reference node from this node for a specific referenceRole. More...
 
vtkMRMLNodeSetAndObserveNthNodeReferenceID (const char *referenceRole, int n, const char *referencedNodeID, vtkIntArray *events=0)
 Set and observe the Nth node ID for a specific reference role. More...
 
void SetAttribute (const char *name, const char *value)
 Set a name value pair attribute. More...
 
virtual void SetDescription (const char *)
 Text description of this node, to be set by the user. More...
 
void SetDisableModifiedEvent (int onOff)
 
virtual void SetHideFromEditors (int)
 
void SetInMRMLCallbackFlag (int flag)
 
virtual void SetName (const char *)
 Name of this node, to be set by the user. More...
 
vtkMRMLNodeSetNodeReferenceID (const char *referenceRole, const char *referencedNodeID)
 Set a reference to a node with specified nodeID from this node for a specific referenceRole. More...
 
vtkMRMLNodeSetNthNodeReferenceID (const char *referenceRole, int n, const char *referencedNodeID)
 Set a N-th reference from this node with specified referencedNodeID for a specific referenceRole. More...
 
virtual void SetSaveWithScene (int)
 
virtual void SetScene (vtkMRMLScene *scene)
 
virtual void SetSceneReferences ()
 Update the references of the node to the scene. More...
 
virtual void SetSelectable (int)
 
virtual void SetSelected (int)
 
void SetSingletonOff ()
 
void SetSingletonOn ()
 
virtual void SetSingletonTag (const char *)
 Tag that make this node a singleton in the scene. More...
 
virtual int StartModify ()
 Start modifying the node. Disable Modify events. More...
 
virtual void UpdateReferenceID (const char *oldID, const char *newID)
 Update the stored reference to another node in the scene. More...
 
virtual void UpdateReferences ()
 The method should remove all pointers and observations to all nodes that are not in the scene anymore. More...
 
virtual void UpdateScene (vtkMRMLScene *)
 
const char * URLDecodeString (const char *inString)
 Decode a URL string. More...
 
const char * URLEncodeString (const char *inString)
 Encode a URL string. More...
 
virtual void WriteNodeBodyXML (ostream &of, int indent)
 Write this node's body to a MRML file in XML format. More...
 

Static Public Member Functions

static int IsTypeOf (const char *type)
 
static vtkMRMLTransformStorageNodeNew ()
 
static vtkMRMLTransformStorageNodeSafeDownCast (vtkObject *o)
 
- Static Public Member Functions inherited from vtkMRMLStorageNode
static std::string GetLowercaseExtensionFromFileName (const std::string &filename)
 
static int IsTypeOf (const char *type)
 
static vtkMRMLStorageNodeSafeDownCast (vtkObject *o)
 
- Static Public Member Functions inherited from vtkMRMLNode
static int IsTypeOf (const char *type)
 
static vtkMRMLNodeSafeDownCast (vtkObject *o)
 

Protected Member Functions

virtual bool IsImageFile (const std::string &filename)
 
void operator= (const vtkMRMLTransformStorageNode &)
 
virtual int ReadDataInternal (vtkMRMLNode *refNode) VTK_OVERRIDE
 Read data and set it in the referenced node. More...
 
virtual int ReadFromImageFile (vtkMRMLNode *refNode)
 
virtual int ReadFromITKv3BSplineTransformFile (vtkMRMLNode *refNode)
 
virtual int ReadFromTransformFile (vtkMRMLNode *refNode)
 
virtual void SetAndObserveTransformFromParentAutoInvert (vtkMRMLTransformNode *transformNode, vtkAbstractTransform *transform)
 
 vtkMRMLTransformStorageNode ()
 
 vtkMRMLTransformStorageNode (const vtkMRMLTransformStorageNode &)
 
virtual int WriteDataInternal (vtkMRMLNode *refNode) VTK_OVERRIDE
 Write data from a referenced node. More...
 
virtual int WriteToImageFile (vtkMRMLNode *refNode)
 
virtual int WriteToTransformFile (vtkMRMLNode *refNode)
 
 ~vtkMRMLTransformStorageNode ()
 
- Protected Member Functions inherited from vtkMRMLStorageNode
virtual void InitializeSupportedReadFileTypes ()
 
void operator= (const vtkMRMLStorageNode &)
 
void StageReadData (vtkMRMLNode *refNode)
 
void StageWriteData (vtkMRMLNode *refNode)
 
 vtkMRMLStorageNode ()
 
 vtkMRMLStorageNode (const vtkMRMLStorageNode &)
 
 ~vtkMRMLStorageNode ()
 
- Protected Member Functions inherited from vtkMRMLNode
virtual const char * GetMRMLAttributeNameFromReferenceRole (const char *refRole)
 Return the mrml attribute name (if found) associated with a reference role. Return 0 otherwise. More...
 
virtual const char * GetReferenceRoleFromMRMLAttributeName (const char *attName)
 Return the reference role (if found) associated with the attribute name found in a MRML scene file. Return 0 otherwise. More...
 
virtual char * GetTempURLString ()
 
void GetUpdatedReferencedNodeEventList (int &oldReferencedNodeUseCount, int &newReferencedNodeUseCount, vtkIntArray *oldConsolidatedEventList, vtkIntArray *newConsolidatedEventList, vtkMRMLNode *oldReferencedNode, vtkMRMLNode *newReferencedNode, vtkMRMLNodeReference *referenceToIgnore, vtkIntArray *newEvents)
 
virtual void InvalidateNodeReferences ()
 
virtual bool IsReferenceRoleGeneric (const char *refRole)
 Return true if the reference role is generic (ends with '/') or false otherwise. More...
 
virtual void OnNodeReferenceAdded (vtkMRMLNodeReference *reference)
 
virtual void OnNodeReferenceModified (vtkMRMLNodeReference *reference)
 Called when a referenced node pointer is modified. More...
 
virtual void OnNodeReferenceRemoved (vtkMRMLNodeReference *reference)
 Called when a referenced node pointer is removed (set to NULL). More...
 
void operator= (const vtkMRMLNode &)
 
void ParseReferencesAttribute (const char *attValue, std::map< std::string, std::string > &references)
 
virtual void SetTempURLString (const char *)
 Get/Set the string used to manage encoding/decoding of strings/URLs with special characters. More...
 
vtkMRMLNodeUpdateNodeReferenceEventObserver (vtkMRMLNode *oldReferencedNode, vtkMRMLNode *newReferencedNode, vtkIntArray *newEvents, vtkMRMLNodeReference *referenceToIgnore)
 
virtual void UpdateNodeReferences (const char *referenceRole=NULL)
 
virtual void UpdateNthNodeReference (const char *referenceRole, int n)
 
 vtkMRMLNode ()
 
 vtkMRMLNode (const vtkMRMLNode &)
 
virtual ~vtkMRMLNode ()
 critical to have a virtual destructor! More...
 

Protected Attributes

int PreferITKv3CompatibleTransforms
 
- Protected Attributes inherited from vtkMRMLStorageNode
std::string DefaultWriteFileExtension
 List of supported extensions to write in. More...
 
char * FileName
 
std::vector< std::string > FileNameList
 An array of file names, should contain the FileName but may not. More...
 
int ReadState
 
vtkTimeStamp * StoredTime
 
vtkStringArray * SupportedReadFileTypes
 List of supported extensions to read in. More...
 
vtkStringArray * SupportedWriteFileTypes
 
char * TempFileName
 
char * URI
 
vtkURIHandlerURIHandler
 
std::vector< std::string > URIList
 An array of URI's, should contain the URI but may not. More...
 
int UseCompression
 
char * WriteFileFormat
 
int WriteState
 
- Protected Attributes inherited from vtkMRMLNode
int AddToScene
 
AttributesType Attributes
 
char * Description
 
int HideFromEditors
 
char * ID
 
int InMRMLCallbackFlag
 Flag to avoid event loops. More...
 
vtkCallbackCommand * MRMLCallbackCommand
 Holders for MRML callbacks. More...
 
vtkObserverManagerMRMLObserverManager
 
char * Name
 
NodeReferenceEventsType NodeReferenceEvents
 
std::map< std::string, std::string > NodeReferenceMRMLAttributeNames
 
NodeReferencesType NodeReferences
 
int SaveWithScene
 
vtkWeakPointer< vtkMRMLSceneScene
 
int Selectable
 
int Selected
 

Additional Inherited Members

- Protected Types inherited from vtkMRMLNode
typedef std::map< std::string, std::string > AttributesType
 
typedef std::map< std::string, vtkSmartPointer< vtkIntArray > > NodeReferenceEventsType
 
typedef std::vector< vtkSmartPointer< vtkMRMLNodeReference > > NodeReferenceListType
 
typedef std::map< std::string, NodeReferenceListTypeNodeReferencesType
 
- Static Protected Member Functions inherited from vtkMRMLNode
static void MRMLCallback (vtkObject *caller, unsigned long eid, void *clientData, void *callData)
 

Detailed Description

MRML node for transform storage on disk.

Storage nodes has methods to read/write transforms to/from disk.

Definition at line 26 of file vtkMRMLTransformStorageNode.h.

Member Typedef Documentation

◆ Superclass

Definition at line 30 of file vtkMRMLTransformStorageNode.h.

Constructor & Destructor Documentation

◆ vtkMRMLTransformStorageNode() [1/2]

vtkMRMLTransformStorageNode::vtkMRMLTransformStorageNode ( )
protected

◆ ~vtkMRMLTransformStorageNode()

vtkMRMLTransformStorageNode::~vtkMRMLTransformStorageNode ( )
protected

◆ vtkMRMLTransformStorageNode() [2/2]

vtkMRMLTransformStorageNode::vtkMRMLTransformStorageNode ( const vtkMRMLTransformStorageNode )
protected

Member Function Documentation

◆ CanReadInReferenceNode()

virtual bool vtkMRMLTransformStorageNode::CanReadInReferenceNode ( vtkMRMLNode refNode)
virtual

Support only transform nodes.

Implements vtkMRMLStorageNode.

◆ Copy()

virtual void vtkMRMLTransformStorageNode::Copy ( vtkMRMLNode node)
virtual

Copy the node's attributes to this object.

Reimplemented from vtkMRMLStorageNode.

◆ CreateNodeInstance()

virtual vtkMRMLNode* vtkMRMLTransformStorageNode::CreateNodeInstance ( )
virtual

Create instance of the default node. Like New only virtual.

Note
Subclasses should implement this method

Implements vtkMRMLStorageNode.

◆ GetClassName()

virtual const char* vtkMRMLTransformStorageNode::GetClassName ( )
virtual

Reimplemented from vtkMRMLStorageNode.

◆ GetNodeTagName()

virtual const char* vtkMRMLTransformStorageNode::GetNodeTagName ( )
inlinevirtual

Get node XML tag name (like Storage, Transform)

Implements vtkMRMLStorageNode.

Definition at line 45 of file vtkMRMLTransformStorageNode.h.

◆ GetPreferITKv3CompatibleTransforms()

virtual int vtkMRMLTransformStorageNode::GetPreferITKv3CompatibleTransforms ( )
virtual

If true then BSpline transforms will be written as deprecated but ITKv3-compatible itk::BSplineDeformableTransform (instead of current itk::BSplineTransform). If a transform cannot be written to ITKv3 format, then this flag is ignored and the transform is written in ITKv4 format.

◆ InitializeSupportedWriteFileTypes()

virtual void vtkMRMLTransformStorageNode::InitializeSupportedWriteFileTypes ( )
virtual

Initialize all the supported write file types.

Reimplemented from vtkMRMLStorageNode.

◆ IsA()

virtual int vtkMRMLTransformStorageNode::IsA ( const char *  type)
virtual

Reimplemented from vtkMRMLStorageNode.

◆ IsImageFile()

virtual bool vtkMRMLTransformStorageNode::IsImageFile ( const std::string &  filename)
protectedvirtual

Returns true if the filename indicates that it is an image file (then it is assumed to be a grid transform and the displacement field is read/written with an image reader/writer class)

◆ IsTypeOf()

static int vtkMRMLTransformStorageNode::IsTypeOf ( const char *  type)
static

◆ New()

static vtkMRMLTransformStorageNode* vtkMRMLTransformStorageNode::New ( )
static

◆ operator=()

void vtkMRMLTransformStorageNode::operator= ( const vtkMRMLTransformStorageNode )
protected

◆ PreferITKv3CompatibleTransformsOff()

virtual void vtkMRMLTransformStorageNode::PreferITKv3CompatibleTransformsOff ( )
virtual

◆ PreferITKv3CompatibleTransformsOn()

virtual void vtkMRMLTransformStorageNode::PreferITKv3CompatibleTransformsOn ( )
virtual

◆ PrintSelf()

void vtkMRMLTransformStorageNode::PrintSelf ( ostream &  os,
vtkIndent  indent 
)

◆ ReadDataInternal()

virtual int vtkMRMLTransformStorageNode::ReadDataInternal ( vtkMRMLNode refNode)
protectedvirtual

Read data and set it in the referenced node.

Reimplemented from vtkMRMLStorageNode.

◆ ReadFromImageFile()

virtual int vtkMRMLTransformStorageNode::ReadFromImageFile ( vtkMRMLNode refNode)
protectedvirtual

Read displacement field transform from a 3-component scalar image. The 3 scalar components in the file specify the displacement in LPS coordinate system. When the transform is read into Slicer, the displacement vectors are converted to RAS coordinate system.

◆ ReadFromITKv3BSplineTransformFile()

virtual int vtkMRMLTransformStorageNode::ReadFromITKv3BSplineTransformFile ( vtkMRMLNode refNode)
protectedvirtual

This method is specialized for ITKv3 tfm files as generated by legacy versions of BRAINSFit (see slicer issue #3788). This generates the vtkOrientedBSplineTransform with an additive bulk transform (as in ITKv3 bspline transform).

◆ ReadFromTransformFile()

virtual int vtkMRMLTransformStorageNode::ReadFromTransformFile ( vtkMRMLNode refNode)
protectedvirtual

This method uses ITK's transform reading infrastucture to read simple or composite transforms. The composite transform can contain nested transforms in any order coming in theory from any file type and it is read into a vtkGeneralTransform. In practice, as of Slicer 4.4, only HDF5 (.h5) files can support composite transforms and the only composite transform in general use is one which includes a linear component and a bspline component. (see slicer issue #3788).

◆ ReadXMLAttributes()

virtual void vtkMRMLTransformStorageNode::ReadXMLAttributes ( const char **  atts)
virtual

Set node attributes.

Reimplemented from vtkMRMLStorageNode.

◆ SafeDownCast()

static vtkMRMLTransformStorageNode* vtkMRMLTransformStorageNode::SafeDownCast ( vtkObject *  o)
static

◆ SetAndObserveTransformFromParentAutoInvert()

virtual void vtkMRMLTransformStorageNode::SetAndObserveTransformFromParentAutoInvert ( vtkMRMLTransformNode transformNode,
vtkAbstractTransform *  transform 
)
protectedvirtual

The method calls SetAndObserveTransformFromParent or SetAndObserveTransformToParent, depending on which one will result in storing a transform that is not inverted (Inverse flag is false). For example, if it the transform's Inverse flag is false then it is saved by using SetAndObserveTransformFromParent as is; if transform's Inverse flag is true, then the transform is inverted (so that its Inverse flag becomes false) and the resulting transform is saved in SetAndObserveTransformToParent. It makes the displayed transform information more intuitive.

◆ SetPreferITKv3CompatibleTransforms()

virtual void vtkMRMLTransformStorageNode::SetPreferITKv3CompatibleTransforms ( int  )
virtual

◆ WriteDataInternal()

virtual int vtkMRMLTransformStorageNode::WriteDataInternal ( vtkMRMLNode refNode)
protectedvirtual

Write data from a referenced node.

Reimplemented from vtkMRMLStorageNode.

◆ WriteToImageFile()

virtual int vtkMRMLTransformStorageNode::WriteToImageFile ( vtkMRMLNode refNode)
protectedvirtual

Write displacement field transform from a 3-component scalar image. The 3 scalar components in Slicer specify the displacement in RAS coordinate system. When the transform is written to file then the displacement vectors are converted to LPS coordinate system.

◆ WriteToTransformFile()

virtual int vtkMRMLTransformStorageNode::WriteToTransformFile ( vtkMRMLNode refNode)
protectedvirtual

Writes simple or composite transform to an ITK transform file. Supports writing of legacy ITKv3 BSpline transform with additive bulk component.

◆ WriteXML()

virtual void vtkMRMLTransformStorageNode::WriteXML ( ostream &  of,
int  indent 
)
virtual

Write this node's information to a MRML file in XML format.

Reimplemented from vtkMRMLStorageNode.

Member Data Documentation

◆ PreferITKv3CompatibleTransforms

int vtkMRMLTransformStorageNode::PreferITKv3CompatibleTransforms
protected

Definition at line 126 of file vtkMRMLTransformStorageNode.h.


The documentation for this class was generated from the following file: