vtkDiffusionTensorMathematics Class Reference

#include <Libs/vtkTeem/vtkDiffusionTensorMathematics.h>

Inheritance diagram for vtkDiffusionTensorMathematics:

Collaboration diagram for vtkDiffusionTensorMathematics:

Public Types
enum	{   VTK_TENS_TRACE = 0, VTK_TENS_DETERMINANT = 1, VTK_TENS_RELATIVE_ANISOTROPY = 2, VTK_TENS_FRACTIONAL_ANISOTROPY = 3,   VTK_TENS_MAX_EIGENVALUE = 4, VTK_TENS_MID_EIGENVALUE = 5, VTK_TENS_MIN_EIGENVALUE = 6, VTK_TENS_LINEAR_MEASURE = 7,   VTK_TENS_PLANAR_MEASURE = 8, VTK_TENS_SPHERICAL_MEASURE = 9, VTK_TENS_COLOR_ORIENTATION = 10, VTK_TENS_D11 = 11,   VTK_TENS_D22 = 12, VTK_TENS_D33 = 13, VTK_TENS_MODE = 14, VTK_TENS_COLOR_MODE =15,   VTK_TENS_MAX_EIGENVALUE_PROJX = 16, VTK_TENS_MAX_EIGENVALUE_PROJY = 17, VTK_TENS_MAX_EIGENVALUE_PROJZ = 18, VTK_TENS_RAI_MAX_EIGENVEC_PROJX = 19,   VTK_TENS_RAI_MAX_EIGENVEC_PROJY = 20, VTK_TENS_RAI_MAX_EIGENVEC_PROJZ = 21, VTK_TENS_MAX_EIGENVEC_PROJX = 22, VTK_TENS_MAX_EIGENVEC_PROJY = 23,   VTK_TENS_MAX_EIGENVEC_PROJZ = 24, VTK_TENS_PARALLEL_DIFFUSIVITY = 25, VTK_TENS_PERPENDICULAR_DIFFUSIVITY = 26, VTK_TENS_COLOR_ORIENTATION_MIDDLE_EIGENVECTOR = 27,   VTK_TENS_COLOR_ORIENTATION_MIN_EIGENVECTOR = 28, VTK_TENS_MEAN_DIFFUSIVITY = 29 }
	Operation options. More...
typedef vtkThreadedImageAlgorithm	Superclass

Public Member Functions
void	ComputeTensorIncrements (vtkImageData *imageData, vtkIdType incr[3])
virtual void	ExtractEigenvaluesOff ()
virtual void	ExtractEigenvaluesOn ()
virtual void	FixNegativeEigenvaluesOff ()
virtual void	FixNegativeEigenvaluesOn ()
virtual const char *	GetClassName ()
virtual int	GetExtractEigenvalues ()
virtual int	GetFixNegativeEigenvalues ()
virtual int	GetMaskLabelValue ()
virtual int	GetMaskWithScalars ()
virtual int	GetOperation ()
	Get the Operation to perform. More...
virtual vtkImageData *	GetScalarMask ()
virtual double	GetScaleFactor ()
virtual vtkMatrix4x4 *	GetTensorRotationMatrix ()
virtual int	IsA (const char *type)
virtual void	MaskWithScalarsOff ()
virtual void	MaskWithScalarsOn ()
void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE
virtual void	SetExtractEigenvalues (int)
	Turn on/off extraction of eigenvalues from tensor. More...
virtual void	SetFixNegativeEigenvalues (int)
virtual void	SetMaskLabelValue (int)
	Label value defining ROI for mask. More...
virtual void	SetMaskWithScalars (int)
virtual void	SetOperation (int)
void	SetOperationToColorByMode ()
void	SetOperationToColorByOrientation ()
void	SetOperationToD11 ()
	Output a matrix (tensor) component. More...
void	SetOperationToD22 ()
void	SetOperationToD33 ()
void	SetOperationToDeterminant ()
	Output the determinant. More...
void	SetOperationToFractionalAnisotropy ()
void	SetOperationToLinearMeasure ()
void	SetOperationToMaxEigenvalue ()
	Output a selected eigenvalue. More...
void	SetOperationToMaxEigenvalueProjectionX ()
	Output Maxeigenvalue*Maxeigenvec_projection also known as L1Z. More...
void	SetOperationToMaxEigenvalueProjectionY ()
void	SetOperationToMaxEigenvalueProjectionZ ()
void	SetOperationToMaxEigenvecX ()
	Output Relative_anisotropy*Maxeigenvec_projection also known as L1z. More...
void	SetOperationToMaxEigenvecY ()
void	SetOperationToMaxEigenvecZ ()
void	SetOperationToMeanDiffusivity ()
void	SetOperationToMiddleEigenvalue ()
void	SetOperationToMinEigenvalue ()
void	SetOperationToMode ()
void	SetOperationToParallelDiffusivity ()
void	SetOperationToPerpendicularDiffusivity ()
void	SetOperationToPlanarMeasure ()
void	SetOperationToRAIMaxEigenvecX ()
	Output Relative_anisotropy*Maxeigenvec_projection also known as L1z. More...
void	SetOperationToRAIMaxEigenvecY ()
void	SetOperationToRAIMaxEigenvecZ ()
void	SetOperationToRelativeAnisotropy ()
	Output various anisotropy and shape measures. More...
void	SetOperationToSphericalMeasure ()
void	SetOperationToTrace ()
	Output the trace (sum of eigenvalues = sum along diagonal) More...
virtual void	SetScalarMask (vtkImageData *)
	Scalar mask. More...
virtual void	SetScaleFactor (double)
virtual void	SetTensorRotationMatrix (vtkMatrix4x4 *)

Static Public Member Functions
static void	ColorByMode (double w[3], double &R, double &G, double &B)
static double	Determinant (double D[3][3])
static int	FixNegativeEigenvaluesMethod (double w[3])
	Helper functions to perform operations pixel-wise. More...
static double	FractionalAnisotropy (double w[3])
static int	IsTypeOf (const char *type)
static double	LinearMeasure (double w[3])
static double	MaxEigenvalue (double w[3])
static double	MaxEigenvalueProjectionX (double **v, double w[3])
static double	MaxEigenvalueProjectionY (double **v, double w[3])
static double	MaxEigenvalueProjectionZ (double **v, double w[3])
static double	MaxEigenvecX (double **v, double w[3])
static double	MaxEigenvecY (double **v, double w[3])
static double	MaxEigenvecZ (double **v, double w[3])
static double	MeanDiffusivity (double w[3])
static double	MiddleEigenvalue (double w[3])
static double	MinEigenvalue (double w[3])
static double	Mode (double w[3])
static void	ModeToRGB (double Mode, double FA, double &R, double &G, double &B)
	Public for access from threads. More...
static vtkDiffusionTensorMathematics *	New ()
static double	ParallelDiffusivity (double w[3])
static double	PerpendicularDiffusivity (double w[3])
static double	PlanarMeasure (double w[3])
static double	RAIMaxEigenvecX (double **v, double w[3])
static double	RAIMaxEigenvecY (double **v, double w[3])
static double	RAIMaxEigenvecZ (double **v, double w[3])
static double	RelativeAnisotropy (double w[3])
static void	RGBToIndex (double R, double G, double B, double &index)
static vtkDiffusionTensorMathematics *	SafeDownCast (vtkObject *o)
static double	SphericalMeasure (double w[3])
static int	TeemEigenSolver (double **m, double *w, double **v)
static double	Trace (double D[3][3])
static double	Trace (double w[3])

Protected Member Functions
int	FillInputPortInformation (int port, vtkInformation *info) VTK_OVERRIDE
virtual int	RequestData (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) VTK_OVERRIDE
virtual int	RequestInformation (vtkInformation *, vtkInformationVector **, vtkInformationVector *) VTK_OVERRIDE
virtual void	ThreadedRequestData (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector, vtkImageData ***inData, vtkImageData **outData, int extent[6], int threadId) VTK_OVERRIDE
	vtkDiffusionTensorMathematics ()
	~vtkDiffusionTensorMathematics ()

Protected Attributes
int	ExtractEigenvalues
	Scale factor for output scalars. More...
int	FixNegativeEigenvalues
int	MaskLabelValue
int	MaskWithScalars
	Boolean controls eigenfunction extraction. More...
int	Operation
vtkImageData *	ScalarMask
double	ScaleFactor
	math operation to perform More...
vtkMatrix4x4 *	TensorRotationMatrix

Detailed Description

Definition at line 37 of file vtkDiffusionTensorMathematics.h.

Member Typedef Documentation

Superclass

typedef vtkThreadedImageAlgorithm vtkDiffusionTensorMathematics::Superclass

Definition at line 41 of file vtkDiffusionTensorMathematics.h.

Member Enumeration Documentation

anonymous enum

anonymous enum

Operation options.

Enumerator
VTK_TENS_TRACE
VTK_TENS_DETERMINANT
VTK_TENS_RELATIVE_ANISOTROPY
VTK_TENS_FRACTIONAL_ANISOTROPY
VTK_TENS_MAX_EIGENVALUE
VTK_TENS_MID_EIGENVALUE
VTK_TENS_MIN_EIGENVALUE
VTK_TENS_LINEAR_MEASURE
VTK_TENS_PLANAR_MEASURE
VTK_TENS_SPHERICAL_MEASURE
VTK_TENS_COLOR_ORIENTATION
VTK_TENS_D11
VTK_TENS_D22
VTK_TENS_D33
VTK_TENS_MODE
VTK_TENS_COLOR_MODE
VTK_TENS_MAX_EIGENVALUE_PROJX
VTK_TENS_MAX_EIGENVALUE_PROJY
VTK_TENS_MAX_EIGENVALUE_PROJZ
VTK_TENS_RAI_MAX_EIGENVEC_PROJX
VTK_TENS_RAI_MAX_EIGENVEC_PROJY
VTK_TENS_RAI_MAX_EIGENVEC_PROJZ
VTK_TENS_MAX_EIGENVEC_PROJX
VTK_TENS_MAX_EIGENVEC_PROJY
VTK_TENS_MAX_EIGENVEC_PROJZ
VTK_TENS_PARALLEL_DIFFUSIVITY
VTK_TENS_PERPENDICULAR_DIFFUSIVITY
VTK_TENS_COLOR_ORIENTATION_MIDDLE_EIGENVECTOR
VTK_TENS_COLOR_ORIENTATION_MIN_EIGENVECTOR
VTK_TENS_MEAN_DIFFUSIVITY

Definition at line 45 of file vtkDiffusionTensorMathematics.h.

Constructor & Destructor Documentation

vtkDiffusionTensorMathematics()

vtkDiffusionTensorMathematics::vtkDiffusionTensorMathematics ( )

protected

~vtkDiffusionTensorMathematics()

vtkDiffusionTensorMathematics::~vtkDiffusionTensorMathematics ( )

protected

Member Function Documentation

ColorByMode()

static void vtkDiffusionTensorMathematics::ColorByMode ( double  w[3], double &  R, double &  G, double &  B  )

static

ComputeTensorIncrements()

void vtkDiffusionTensorMathematics::ComputeTensorIncrements	(	vtkImageData *	imageData,
		vtkIdType	incr[3]
	)

Determinant()

static double vtkDiffusionTensorMathematics::Determinant ( double  D[3][3] )

static

ExtractEigenvaluesOff()

virtual void vtkDiffusionTensorMathematics::ExtractEigenvaluesOff ( )

virtual

ExtractEigenvaluesOn()

virtual void vtkDiffusionTensorMathematics::ExtractEigenvaluesOn ( )

virtual

FillInputPortInformation()

int vtkDiffusionTensorMathematics::FillInputPortInformation ( int  port, vtkInformation *  info  )

protected

FixNegativeEigenvaluesMethod()

static int vtkDiffusionTensorMathematics::FixNegativeEigenvaluesMethod ( double  w[3] )

static

Helper functions to perform operations pixel-wise.

FixNegativeEigenvaluesOff()

virtual void vtkDiffusionTensorMathematics::FixNegativeEigenvaluesOff ( )

virtual

FixNegativeEigenvaluesOn()

virtual void vtkDiffusionTensorMathematics::FixNegativeEigenvaluesOn ( )

virtual

FractionalAnisotropy()

static double vtkDiffusionTensorMathematics::FractionalAnisotropy ( double  w[3] )

static

GetClassName()

virtual const char* vtkDiffusionTensorMathematics::GetClassName ( )

virtual

GetExtractEigenvalues()

virtual int vtkDiffusionTensorMathematics::GetExtractEigenvalues ( )

virtual

GetFixNegativeEigenvalues()

virtual int vtkDiffusionTensorMathematics::GetFixNegativeEigenvalues ( )

virtual

GetMaskLabelValue()

virtual int vtkDiffusionTensorMathematics::GetMaskLabelValue ( )

virtual

GetMaskWithScalars()

virtual int vtkDiffusionTensorMathematics::GetMaskWithScalars ( )

virtual

GetOperation()

virtual int vtkDiffusionTensorMathematics::GetOperation ( )

virtual

Get the Operation to perform.

GetScalarMask()

virtual vtkImageData* vtkDiffusionTensorMathematics::GetScalarMask ( )

virtual

GetScaleFactor()

virtual double vtkDiffusionTensorMathematics::GetScaleFactor ( )

virtual

GetTensorRotationMatrix()

virtual vtkMatrix4x4* vtkDiffusionTensorMathematics::GetTensorRotationMatrix ( )

virtual

IsA()

virtual int vtkDiffusionTensorMathematics::IsA ( const char *  type )

virtual

IsTypeOf()

static int vtkDiffusionTensorMathematics::IsTypeOf ( const char *  type )

static

LinearMeasure()

static double vtkDiffusionTensorMathematics::LinearMeasure ( double  w[3] )

static

MaskWithScalarsOff()

virtual void vtkDiffusionTensorMathematics::MaskWithScalarsOff ( )

virtual

MaskWithScalarsOn()

virtual void vtkDiffusionTensorMathematics::MaskWithScalarsOn ( )

virtual

Description Input scalars are a binary mask: 0 prevents display of tensor quantity at that point

MaxEigenvalue()

static double vtkDiffusionTensorMathematics::MaxEigenvalue ( double  w[3] )

static

MaxEigenvalueProjectionX()

static double vtkDiffusionTensorMathematics::MaxEigenvalueProjectionX ( double **  v, double  w[3]  )

static

MaxEigenvalueProjectionY()

static double vtkDiffusionTensorMathematics::MaxEigenvalueProjectionY ( double **  v, double  w[3]  )

static

MaxEigenvalueProjectionZ()

static double vtkDiffusionTensorMathematics::MaxEigenvalueProjectionZ ( double **  v, double  w[3]  )

static

MaxEigenvecX()

static double vtkDiffusionTensorMathematics::MaxEigenvecX ( double **  v, double  w[3]  )

static

MaxEigenvecY()

static double vtkDiffusionTensorMathematics::MaxEigenvecY ( double **  v, double  w[3]  )

static

MaxEigenvecZ()

static double vtkDiffusionTensorMathematics::MaxEigenvecZ ( double **  v, double  w[3]  )

static

MeanDiffusivity()

static double vtkDiffusionTensorMathematics::MeanDiffusivity ( double  w[3] )

static

MiddleEigenvalue()

static double vtkDiffusionTensorMathematics::MiddleEigenvalue ( double  w[3] )

static

MinEigenvalue()

static double vtkDiffusionTensorMathematics::MinEigenvalue ( double  w[3] )

static

Mode()

static double vtkDiffusionTensorMathematics::Mode ( double  w[3] )

static

ModeToRGB()

static void vtkDiffusionTensorMathematics::ModeToRGB ( double  Mode, double  FA, double &  R, double &  G, double &  B  )

static

Public for access from threads.

New()

static vtkDiffusionTensorMathematics* vtkDiffusionTensorMathematics::New ( )

static

ParallelDiffusivity()

static double vtkDiffusionTensorMathematics::ParallelDiffusivity ( double  w[3] )

static

PerpendicularDiffusivity()

static double vtkDiffusionTensorMathematics::PerpendicularDiffusivity ( double  w[3] )

static

PlanarMeasure()

static double vtkDiffusionTensorMathematics::PlanarMeasure ( double  w[3] )

static

PrintSelf()

void vtkDiffusionTensorMathematics::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

RAIMaxEigenvecX()

static double vtkDiffusionTensorMathematics::RAIMaxEigenvecX ( double **  v, double  w[3]  )

static

RAIMaxEigenvecY()

static double vtkDiffusionTensorMathematics::RAIMaxEigenvecY ( double **  v, double  w[3]  )

static

RAIMaxEigenvecZ()

static double vtkDiffusionTensorMathematics::RAIMaxEigenvecZ ( double **  v, double  w[3]  )

static

RelativeAnisotropy()

static double vtkDiffusionTensorMathematics::RelativeAnisotropy ( double  w[3] )

static

RequestData()

virtual int vtkDiffusionTensorMathematics::RequestData ( vtkInformation *  request, vtkInformationVector **  inputVector, vtkInformationVector *  outputVector  )

protectedvirtual

RequestInformation()

virtual int vtkDiffusionTensorMathematics::RequestInformation ( vtkInformation *  , vtkInformationVector **  , vtkInformationVector *    )

protectedvirtual

RGBToIndex()

static void vtkDiffusionTensorMathematics::RGBToIndex ( double  R, double  G, double  B, double &  index  )

static

SafeDownCast()

static vtkDiffusionTensorMathematics* vtkDiffusionTensorMathematics::SafeDownCast ( vtkObject *  o )

static

SetExtractEigenvalues()

virtual void vtkDiffusionTensorMathematics::SetExtractEigenvalues ( int  )

virtual

Turn on/off extraction of eigenvalues from tensor.

SetFixNegativeEigenvalues()

virtual void vtkDiffusionTensorMathematics::SetFixNegativeEigenvalues ( int  )

virtual

SetMaskLabelValue()

virtual void vtkDiffusionTensorMathematics::SetMaskLabelValue ( int  )

virtual

Label value defining ROI for mask.

SetMaskWithScalars()

virtual void vtkDiffusionTensorMathematics::SetMaskWithScalars ( int  )

virtual

SetOperation()

virtual void vtkDiffusionTensorMathematics::SetOperation ( int  )

virtual

SetOperationToColorByMode()

void vtkDiffusionTensorMathematics::SetOperationToColorByMode ( )

inline

Output RGB color according to colormapping of mode, with final RGB being a linear combination of gray and this color. Amount of gray is determined by FA. Thanks to Gordon Lothar Kindlmann for this method.

Definition at line 174 of file vtkDiffusionTensorMathematics.h.

SetOperationToColorByOrientation()

void vtkDiffusionTensorMathematics::SetOperationToColorByOrientation ( )

inline

Output RGB color according to XYZ of eigenvectors. Output A (alpha, or transparency) according to anisotropy (1-spherical measure).

Definition at line 166 of file vtkDiffusionTensorMathematics.h.

SetOperationToD11()

void vtkDiffusionTensorMathematics::SetOperationToD11 ( )

inline

Output a matrix (tensor) component.

Definition at line 155 of file vtkDiffusionTensorMathematics.h.

SetOperationToD22()

void vtkDiffusionTensorMathematics::SetOperationToD22 ( )

inline

Definition at line 157 of file vtkDiffusionTensorMathematics.h.

SetOperationToD33()

void vtkDiffusionTensorMathematics::SetOperationToD33 ( )

inline

Definition at line 159 of file vtkDiffusionTensorMathematics.h.

SetOperationToDeterminant()

void vtkDiffusionTensorMathematics::SetOperationToDeterminant ( )

inline

Output the determinant.

Definition at line 90 of file vtkDiffusionTensorMathematics.h.

SetOperationToFractionalAnisotropy()

void vtkDiffusionTensorMathematics::SetOperationToFractionalAnisotropy ( )

inline

Definition at line 97 of file vtkDiffusionTensorMathematics.h.

SetOperationToLinearMeasure()

void vtkDiffusionTensorMathematics::SetOperationToLinearMeasure ( )

inline

Definition at line 99 of file vtkDiffusionTensorMathematics.h.

SetOperationToMaxEigenvalue()

void vtkDiffusionTensorMathematics::SetOperationToMaxEigenvalue ( )

inline

Output a selected eigenvalue.

Definition at line 118 of file vtkDiffusionTensorMathematics.h.

SetOperationToMaxEigenvalueProjectionX()

void vtkDiffusionTensorMathematics::SetOperationToMaxEigenvalueProjectionX ( )

inline

Output Maxeigenvalue*Maxeigenvec_projection also known as L1Z.

Definition at line 127 of file vtkDiffusionTensorMathematics.h.

SetOperationToMaxEigenvalueProjectionY()

void vtkDiffusionTensorMathematics::SetOperationToMaxEigenvalueProjectionY ( )

inline

Definition at line 129 of file vtkDiffusionTensorMathematics.h.

SetOperationToMaxEigenvalueProjectionZ()

void vtkDiffusionTensorMathematics::SetOperationToMaxEigenvalueProjectionZ ( )

inline

Definition at line 131 of file vtkDiffusionTensorMathematics.h.

SetOperationToMaxEigenvecX()

void vtkDiffusionTensorMathematics::SetOperationToMaxEigenvecX ( )

inline

Output Relative_anisotropy*Maxeigenvec_projection also known as L1z.

Definition at line 145 of file vtkDiffusionTensorMathematics.h.

SetOperationToMaxEigenvecY()

void vtkDiffusionTensorMathematics::SetOperationToMaxEigenvecY ( )

inline

Definition at line 147 of file vtkDiffusionTensorMathematics.h.

SetOperationToMaxEigenvecZ()

void vtkDiffusionTensorMathematics::SetOperationToMaxEigenvecZ ( )

inline

Definition at line 149 of file vtkDiffusionTensorMathematics.h.

SetOperationToMeanDiffusivity()

void vtkDiffusionTensorMathematics::SetOperationToMeanDiffusivity ( )

inline

Definition at line 113 of file vtkDiffusionTensorMathematics.h.

SetOperationToMiddleEigenvalue()

void vtkDiffusionTensorMathematics::SetOperationToMiddleEigenvalue ( )

inline

Definition at line 120 of file vtkDiffusionTensorMathematics.h.

SetOperationToMinEigenvalue()

void vtkDiffusionTensorMathematics::SetOperationToMinEigenvalue ( )

inline

Definition at line 122 of file vtkDiffusionTensorMathematics.h.

SetOperationToMode()

void vtkDiffusionTensorMathematics::SetOperationToMode ( )

inline

This is the skewness of the eigenvalues (thanks to Gordon Lothar (of the Hill People) Kindlmann)

Definition at line 107 of file vtkDiffusionTensorMathematics.h.

SetOperationToParallelDiffusivity()

void vtkDiffusionTensorMathematics::SetOperationToParallelDiffusivity ( )

inline

Definition at line 109 of file vtkDiffusionTensorMathematics.h.

SetOperationToPerpendicularDiffusivity()

void vtkDiffusionTensorMathematics::SetOperationToPerpendicularDiffusivity ( )

inline

Definition at line 111 of file vtkDiffusionTensorMathematics.h.

SetOperationToPlanarMeasure()

void vtkDiffusionTensorMathematics::SetOperationToPlanarMeasure ( )

inline

Definition at line 101 of file vtkDiffusionTensorMathematics.h.

SetOperationToRAIMaxEigenvecX()

void vtkDiffusionTensorMathematics::SetOperationToRAIMaxEigenvecX ( )

inline

Output Relative_anisotropy*Maxeigenvec_projection also known as L1z.

Definition at line 136 of file vtkDiffusionTensorMathematics.h.

SetOperationToRAIMaxEigenvecY()

void vtkDiffusionTensorMathematics::SetOperationToRAIMaxEigenvecY ( )

inline

Definition at line 138 of file vtkDiffusionTensorMathematics.h.

SetOperationToRAIMaxEigenvecZ()

void vtkDiffusionTensorMathematics::SetOperationToRAIMaxEigenvecZ ( )

inline

Definition at line 140 of file vtkDiffusionTensorMathematics.h.

SetOperationToRelativeAnisotropy()

void vtkDiffusionTensorMathematics::SetOperationToRelativeAnisotropy ( )

inline

Output various anisotropy and shape measures.

Definition at line 95 of file vtkDiffusionTensorMathematics.h.

SetOperationToSphericalMeasure()

void vtkDiffusionTensorMathematics::SetOperationToSphericalMeasure ( )

inline

Definition at line 103 of file vtkDiffusionTensorMathematics.h.

SetOperationToTrace()

void vtkDiffusionTensorMathematics::SetOperationToTrace ( )

inline

Output the trace (sum of eigenvalues = sum along diagonal)

Definition at line 85 of file vtkDiffusionTensorMathematics.h.

SetScalarMask()

virtual void vtkDiffusionTensorMathematics::SetScalarMask ( vtkImageData *  )

virtual

Scalar mask.

SetScaleFactor()

virtual void vtkDiffusionTensorMathematics::SetScaleFactor ( double  )

virtual

Specify scale factor to scale output (float) scalars by. This is not used when the output is RGBA (char color data).

SetTensorRotationMatrix()

virtual void vtkDiffusionTensorMathematics::SetTensorRotationMatrix ( vtkMatrix4x4 *  )

virtual

Description This matrix is only used for ColorByOrientation. We transform the tensor orientation by this matrix before setting the output RGB values. This is useful to put the output colors into a standard coordinate system (i.e. RAS) regardless of the data scan order. Example usage is as follows: 1) If tensors are to be displayed in a coordinate system that is not IJK (array-based), and the whole volume is being rotated, each tensor needs also to be rotated. First find the matrix that positions your volume. (This is how the entire volume is positioned, not the matrix that positions an arbitrary reformatted slice.) 2) Remove scaling and translation from this matrix; we just need to rotate each tensor. 3) Set TensorRotationMatrix to this rotation matrix.

SphericalMeasure()

static double vtkDiffusionTensorMathematics::SphericalMeasure ( double  w[3] )

static

TeemEigenSolver()

static int vtkDiffusionTensorMathematics::TeemEigenSolver ( double **  m, double *  w, double **  v  )

static

ThreadedRequestData()

virtual void vtkDiffusionTensorMathematics::ThreadedRequestData ( vtkInformation *  request, vtkInformationVector **  inputVector, vtkInformationVector *  outputVector, vtkImageData ***  inData, vtkImageData **  outData, int  extent[6], int  threadId  )

protectedvirtual

Trace() [1/2]

static double vtkDiffusionTensorMathematics::Trace ( double  D[3][3] )

static

Trace() [2/2]

static double vtkDiffusionTensorMathematics::Trace ( double  w[3] )

static

Member Data Documentation

ExtractEigenvalues

int vtkDiffusionTensorMathematics::ExtractEigenvalues

protected

Scale factor for output scalars.

Definition at line 279 of file vtkDiffusionTensorMathematics.h.

FixNegativeEigenvalues

int vtkDiffusionTensorMathematics::FixNegativeEigenvalues

protected

Definition at line 286 of file vtkDiffusionTensorMathematics.h.

MaskLabelValue

int vtkDiffusionTensorMathematics::MaskLabelValue

protected

Definition at line 283 of file vtkDiffusionTensorMathematics.h.

MaskWithScalars

int vtkDiffusionTensorMathematics::MaskWithScalars

protected

Boolean controls eigenfunction extraction.

Definition at line 281 of file vtkDiffusionTensorMathematics.h.

Operation

int vtkDiffusionTensorMathematics::Operation

protected

Definition at line 277 of file vtkDiffusionTensorMathematics.h.

ScalarMask

vtkImageData* vtkDiffusionTensorMathematics::ScalarMask

protected

Definition at line 282 of file vtkDiffusionTensorMathematics.h.

ScaleFactor

double vtkDiffusionTensorMathematics::ScaleFactor

protected

math operation to perform

Definition at line 278 of file vtkDiffusionTensorMathematics.h.

TensorRotationMatrix

vtkMatrix4x4* vtkDiffusionTensorMathematics::TensorRotationMatrix

protected

Definition at line 285 of file vtkDiffusionTensorMathematics.h.

---

The documentation for this class was generated from the following file:

• Libs/vtkTeem/vtkDiffusionTensorMathematics.h