vtkSlicerSegmentationGeometryLogic Class Reference

#include <Modules/Loadable/Segmentations/Logic/vtkSlicerSegmentationGeometryLogic.h>

Inheritance diagram for vtkSlicerSegmentationGeometryLogic:

Collaboration diagram for vtkSlicerSegmentationGeometryLogic:

Public Types
typedef vtkObject	Superclass

Public Member Functions
std::string	CalculateOutputGeometry ()
void	ComputeSourceAxisIndexForInputAxis ()
virtual const char *	GetClassName ()
virtual int *	GetInputAxisIndexForSourceAxis ()
virtual void	GetInputAxisIndexForSourceAxis (int data[3])
virtual vtkMRMLSegmentationNode *	GetInputSegmentationNode ()
virtual bool	GetIsotropicSpacing ()
virtual vtkOrientedImageData *	GetOutputGeometryImageData ()
virtual double	GetOversamplingFactor ()
virtual int *	GetSourceAxisIndexForInputAxis ()
virtual void	GetSourceAxisIndexForInputAxis (int data[3])
virtual vtkMRMLDisplayableNode *	GetSourceGeometryNode ()
virtual double *	GetUserSpacing ()
virtual void	GetUserSpacing (double data[3])
bool	InputSegmentationCanBeResampled ()
	Determine if input segmentation is non-empty, and with binary labelmap master. More...
virtual int	IsA (const char *type)
virtual void	IsotropicSpacingOff ()
virtual void	IsotropicSpacingOn ()
bool	IsSourceSegmentationWithBinaryLabelmapMaster ()
	Determine if source node is a non-empty segmentation with a labelmap master. More...
void	PrintSelf (ostream &os, vtkIndent indent) override
void	ResetGeometryImageData ()
	Reset geometry image data. More...
virtual void	SetInputSegmentationNode (vtkMRMLSegmentationNode *)
virtual void	SetIsotropicSpacing (bool)
virtual void	SetOversamplingFactor (double)
virtual void	SetSourceGeometryNode (vtkMRMLDisplayableNode *node)
virtual void	SetUserSpacing (double data[])

Static Public Member Functions
static int	IsTypeOf (const char *type)
static vtkSlicerSegmentationGeometryLogic *	New ()
static vtkSlicerSegmentationGeometryLogic *	SafeDownCast (vtkObject *o)

Protected Member Functions
std::string	CalculateOutputGeometryFromBounds (bool keepCurrentAxisDirections)
std::string	CalculateOutputGeometryFromImage ()
	vtkSlicerSegmentationGeometryLogic ()
	~vtkSlicerSegmentationGeometryLogic () override

Protected Attributes
int	InputAxisIndexForSourceAxis [3] { 0, 1, 2 }
	Source to input axes mapping. More...
vtkMRMLSegmentationNode *	InputSegmentationNode
	Input segmentation MRML node to modify the labelmap geometry of. More...
bool	IsotropicSpacing
vtkOrientedImageData *	OutputGeometryImageData
	Oriented image data containing output geometry. This is what the class calculates from the inputs. More...
double	OversamplingFactor
int	SourceAxisIndexForInputAxis [3] { 0, 1, 2 }
	Inverse permutation of. More...
vtkMRMLDisplayableNode *	SourceGeometryNode
	MRML node specifying the source geometry. More...
double	UserSpacing [3] { 1.0, 1.0, 1.0 }

Detailed Description

Definition at line 40 of file vtkSlicerSegmentationGeometryLogic.h.

Member Typedef Documentation

Superclass

typedef vtkObject vtkSlicerSegmentationGeometryLogic::Superclass

Definition at line 44 of file vtkSlicerSegmentationGeometryLogic.h.

Constructor & Destructor Documentation

vtkSlicerSegmentationGeometryLogic()

vtkSlicerSegmentationGeometryLogic::vtkSlicerSegmentationGeometryLogic ( )

protected

~vtkSlicerSegmentationGeometryLogic()

vtkSlicerSegmentationGeometryLogic::~vtkSlicerSegmentationGeometryLogic ( )

overrideprotected

Member Function Documentation

CalculateOutputGeometry()

std::string vtkSlicerSegmentationGeometryLogic::CalculateOutputGeometry

(

)

Calculate output geometry into

See also

GeometryImageData with current options

Returns

Error message. Empty when successful

CalculateOutputGeometryFromBounds()

std::string vtkSlicerSegmentationGeometryLogic::CalculateOutputGeometryFromBounds ( bool  keepCurrentAxisDirections )

protected

Calculate output geometry into

See also

GeometryImageData with current options from node bounds. If keepCurrentAxisDirections is true then the current axes directions will be preserved, otherwise the source axes directions are used.

Returns

Error message. Empty when successful

CalculateOutputGeometryFromImage()

std::string vtkSlicerSegmentationGeometryLogic::CalculateOutputGeometryFromImage ( )

protected

Calculate output geometry into

See also

GeometryImageData with current options from image or segmentation that uses labelmap as master representation.

Returns

Error message. Empty when successful

ComputeSourceAxisIndexForInputAxis()

void vtkSlicerSegmentationGeometryLogic::ComputeSourceAxisIndexForInputAxis

(

)

Match the axes of the input labelmap to the axes of the transformed source node. Use this calculated permutation for updating spacing widget from geometry and interpreting spacing input

GetClassName()

virtual const char* vtkSlicerSegmentationGeometryLogic::GetClassName ( )

virtual

GetInputAxisIndexForSourceAxis() [1/2]

virtual int* vtkSlicerSegmentationGeometryLogic::GetInputAxisIndexForSourceAxis ( )

virtual

GetInputAxisIndexForSourceAxis() [2/2]

virtual void vtkSlicerSegmentationGeometryLogic::GetInputAxisIndexForSourceAxis ( int  data[3] )

virtual

GetInputSegmentationNode()

virtual vtkMRMLSegmentationNode* vtkSlicerSegmentationGeometryLogic::GetInputSegmentationNode ( )

virtual

GetIsotropicSpacing()

virtual bool vtkSlicerSegmentationGeometryLogic::GetIsotropicSpacing ( )

virtual

GetOutputGeometryImageData()

virtual vtkOrientedImageData* vtkSlicerSegmentationGeometryLogic::GetOutputGeometryImageData ( )

virtual

GetOversamplingFactor()

virtual double vtkSlicerSegmentationGeometryLogic::GetOversamplingFactor ( )

virtual

GetSourceAxisIndexForInputAxis() [1/2]

virtual void vtkSlicerSegmentationGeometryLogic::GetSourceAxisIndexForInputAxis ( int  data[3] )

virtual

GetSourceAxisIndexForInputAxis() [2/2]

virtual int* vtkSlicerSegmentationGeometryLogic::GetSourceAxisIndexForInputAxis ( )

virtual

GetSourceGeometryNode()

virtual vtkMRMLDisplayableNode* vtkSlicerSegmentationGeometryLogic::GetSourceGeometryNode ( )

virtual

GetUserSpacing() [1/2]

virtual double* vtkSlicerSegmentationGeometryLogic::GetUserSpacing ( )

virtual

GetUserSpacing() [2/2]

virtual void vtkSlicerSegmentationGeometryLogic::GetUserSpacing ( double  data[3] )

virtual

InputSegmentationCanBeResampled()

bool vtkSlicerSegmentationGeometryLogic::InputSegmentationCanBeResampled

(

)

Determine if input segmentation is non-empty, and with binary labelmap master.

IsA()

virtual int vtkSlicerSegmentationGeometryLogic::IsA ( const char *  type )

virtual

IsotropicSpacingOff()

virtual void vtkSlicerSegmentationGeometryLogic::IsotropicSpacingOff ( )

virtual

IsotropicSpacingOn()

virtual void vtkSlicerSegmentationGeometryLogic::IsotropicSpacingOn ( )

virtual

IsSourceSegmentationWithBinaryLabelmapMaster()

bool vtkSlicerSegmentationGeometryLogic::IsSourceSegmentationWithBinaryLabelmapMaster

(

)

Determine if source node is a non-empty segmentation with a labelmap master.

IsTypeOf()

static int vtkSlicerSegmentationGeometryLogic::IsTypeOf ( const char *  type )

static

New()

static vtkSlicerSegmentationGeometryLogic* vtkSlicerSegmentationGeometryLogic::New ( )

static

PrintSelf()

void vtkSlicerSegmentationGeometryLogic::PrintSelf ( ostream &  os, vtkIndent  indent  )

override

ResetGeometryImageData()

void vtkSlicerSegmentationGeometryLogic::ResetGeometryImageData

(

)

Reset geometry image data.

See also

GeometryImageData

SafeDownCast()

static vtkSlicerSegmentationGeometryLogic* vtkSlicerSegmentationGeometryLogic::SafeDownCast ( vtkObject *  o )

static

SetInputSegmentationNode()

virtual void vtkSlicerSegmentationGeometryLogic::SetInputSegmentationNode ( vtkMRMLSegmentationNode *  )

virtual

SetIsotropicSpacing()

virtual void vtkSlicerSegmentationGeometryLogic::SetIsotropicSpacing ( bool  )

virtual

SetOversamplingFactor()

virtual void vtkSlicerSegmentationGeometryLogic::SetOversamplingFactor ( double  )

virtual

SetSourceGeometryNode()

virtual void vtkSlicerSegmentationGeometryLogic::SetSourceGeometryNode ( vtkMRMLDisplayableNode *  node )

virtual

SetUserSpacing()

virtual void vtkSlicerSegmentationGeometryLogic::SetUserSpacing ( double  data[] )

virtual

Member Data Documentation

InputAxisIndexForSourceAxis

int vtkSlicerSegmentationGeometryLogic::InputAxisIndexForSourceAxis[3] { 0, 1, 2 }

protected

Source to input axes mapping.

See also

matchInputAndSourceAxes

Definition at line 127 of file vtkSlicerSegmentationGeometryLogic.h.

InputSegmentationNode

vtkMRMLSegmentationNode* vtkSlicerSegmentationGeometryLogic::InputSegmentationNode

protected

Input segmentation MRML node to modify the labelmap geometry of.

Definition at line 104 of file vtkSlicerSegmentationGeometryLogic.h.

IsotropicSpacing

bool vtkSlicerSegmentationGeometryLogic::IsotropicSpacing

protected

Flag indicating whether isotropic spacing is requested. Off by default Resample the volume to have isotropic spacing, which means the voxels will be cubes. Use smallest spacing. Useful if the volume has elongated voxels.

Definition at line 112 of file vtkSlicerSegmentationGeometryLogic.h.

OutputGeometryImageData

vtkOrientedImageData* vtkSlicerSegmentationGeometryLogic::OutputGeometryImageData

protected

Oriented image data containing output geometry. This is what the class calculates from the inputs.

Definition at line 124 of file vtkSlicerSegmentationGeometryLogic.h.

OversamplingFactor

double vtkSlicerSegmentationGeometryLogic::OversamplingFactor

protected

Oversampling factor: Split each voxel of the volume to this many voxels along each direction. Useful when increasing the resolution is needed 1 by default.

Definition at line 117 of file vtkSlicerSegmentationGeometryLogic.h.

SourceAxisIndexForInputAxis

int vtkSlicerSegmentationGeometryLogic::SourceAxisIndexForInputAxis[3] { 0, 1, 2 }

protected

Inverse permutation of.

See also

InputAxisIndexForSourceAxis

Definition at line 129 of file vtkSlicerSegmentationGeometryLogic.h.

SourceGeometryNode

vtkMRMLDisplayableNode* vtkSlicerSegmentationGeometryLogic::SourceGeometryNode

protected

MRML node specifying the source geometry.

Definition at line 107 of file vtkSlicerSegmentationGeometryLogic.h.

UserSpacing

double vtkSlicerSegmentationGeometryLogic::UserSpacing[3] { 1.0, 1.0, 1.0 }

protected

Explicitly specified spacing. Only applied if

See also

SourceGeometryNode does not contain volume data (i.e. not a volume node nor a segmentation node with labelmap master, but an ROI, model, or segmentation with poly data master)

Definition at line 121 of file vtkSlicerSegmentationGeometryLogic.h.

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The documentation for this class was generated from the following file:

• Modules/Loadable/Segmentations/Logic/vtkSlicerSegmentationGeometryLogic.h