Slicer  4.10
Slicer is a multi-platform, free and open source software package for visualization and medical image computing
dtitypes.h
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1 // Copied from dtiprocess
2 // available there: http://www.nitrc.org/projects/dtiprocess/
3 /*=========================================================================
4 
5  Program: NeuroLib (DTI command line tools)
6  Language: C++
7  Date: $Date: 2010/03/09 18:01:02 $
8  Version: $Revision: 1.2 $
9  Author: Casey Goodlett (gcasey@sci.utah.edu)
10 
11  Copyright (c) Casey Goodlett. All rights reserved.
12  See NeuroLibCopyright.txt or http://www.ia.unc.edu/dev/Copyright.htm for details.
13 
14  This software is distributed WITHOUT ANY WARRANTY; without even
15  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
16  PURPOSE. See the above copyright notices for more information.
17 
18 =========================================================================*/
19 
20 #ifndef DTITYPES_H
21 #define DTITYPES_H
22 
23 // ITK Data types
24 #include <itkImage.h>
25 #include <itkVectorContainer.h>
26 #include <itkVector.h>
27 #include <itkCovariantVector.h>
28 #include <itkDiffusionTensor3D.h>
29 #include <itkAffineTransform.h>
30 #include <itkDTITubeSpatialObject.h>
31 #include <itkGroupSpatialObject.h>
32 #include <itkRGBPixel.h>
33 #include <itkVectorImage.h>
34 
35 // VNL Includes
36 #include <vnl/vnl_matrix.h>
37 #include <vnl/vnl_vector_fixed.h>
38 
39 // Define necessary types for images
40 typedef double RealType;
41 typedef double TransformRealType;
42 typedef unsigned char LabelType;
43 const unsigned int DIM = 3;
44 
45 typedef unsigned short ScalarPixelType;
46 typedef itk::DiffusionTensor3D<double> TensorPixelType;
47 typedef itk::Vector<double, 3> DeformationPixelType;
48 typedef itk::CovariantVector<double, 3> GradientPixelType;
49 
50 typedef itk::VectorImage<ScalarPixelType, DIM> VectorImageType;
51 typedef itk::Image<TensorPixelType, DIM> TensorImageType;
52 
53 typedef itk::Image<DeformationPixelType, DIM> DeformationImageType;
54 typedef itk::Image<GradientPixelType, DIM> GradientImageType;
55 
56 typedef itk::Image<RealType, DIM> RealImageType;
57 typedef itk::Image<ScalarPixelType, DIM> IntImageType;
58 typedef itk::Image<LabelType, DIM> LabelImageType;
59 typedef itk::Image<itk::RGBPixel<unsigned char>, 3> RGBImageType;
60 
61 typedef TensorImageType::SizeType ImageSizeType;
62 typedef TensorImageType::SpacingType ImageSpacingType;
63 
64 typedef itk::AffineTransform<TransformRealType, 3> AffineTransformType;
65 
66 typedef vnl_vector_fixed<double, 3> GradientType;
67 typedef itk::VectorContainer<unsigned int, GradientType> GradientListType;
68 
69 // enum InterpolationType {NearestNeighbor, Linear, Cubic};
70 // enum TensorReorientationType {FiniteStrain, PreservationPrincipalDirection};
71 
72 // enum EigenValueIndex {Lambda1 = 0, Lambda2, Lambda3};
73 
74 // typedef itk::DTITubeSpatialObject<3> DTITubeType;
75 // typedef DTITubeType::TubePointType DTIPointType;
76 // typedef DTITubeType::PointListType DTIPointListType;
77 
78 // typedef itk::GroupSpatialObject<3> GroupType;
79 // typedef GroupType::ChildrenListType ChildrenListType;
80 
81 #endif
const unsigned int DIM
Definition: dtitypes.h:43
itk::Image< LabelType, DIM > LabelImageType
Definition: dtitypes.h:58
itk::Image< itk::RGBPixel< unsigned char >, 3 > RGBImageType
Definition: dtitypes.h:59
vnl_vector_fixed< double, 3 > GradientType
Definition: dtitypes.h:66
double RealType
Definition: dtitypes.h:40
unsigned char LabelType
Definition: dtitypes.h:42
itk::VectorContainer< unsigned int, GradientType > GradientListType
Definition: dtitypes.h:67
TensorImageType::SpacingType ImageSpacingType
Definition: dtitypes.h:62
itk::VectorImage< ScalarPixelType, DIM > VectorImageType
Definition: dtitypes.h:50
itk::Image< GradientPixelType, DIM > GradientImageType
Definition: dtitypes.h:54
TensorImageType::SizeType ImageSizeType
Definition: dtitypes.h:61
double TransformRealType
Definition: dtitypes.h:41
itk::AffineTransform< TransformRealType, 3 > AffineTransformType
Definition: dtitypes.h:64
itk::Image< DeformationPixelType, DIM > DeformationImageType
Definition: dtitypes.h:53
unsigned short ScalarPixelType
Definition: dtitypes.h:45
itk::Vector< double, 3 > DeformationPixelType
Definition: dtitypes.h:47
itk::CovariantVector< double, 3 > GradientPixelType
Definition: dtitypes.h:48
itk::Image< TensorPixelType, DIM > TensorImageType
Definition: dtitypes.h:51
itk::Image< ScalarPixelType, DIM > IntImageType
Definition: dtitypes.h:57
itk::DiffusionTensor3D< double > TensorPixelType
Definition: dtitypes.h:46
itk::Image< RealType, DIM > RealImageType
Definition: dtitypes.h:56