MRML node for segmentation storage on disk. More...

#include <Libs/MRML/Core/vtkMRMLSegmentationStorageNode.h>

Inheritance diagram for vtkMRMLSegmentationStorageNode:

Collaboration diagram for vtkMRMLSegmentationStorageNode:

[legend]

Public Types
typedef vtkMRMLStorageNode	Superclass

Public Types inherited from vtkMRMLStorageNode
enum	{ Idle, Pending, Scheduled, Transferring, TransferDone, Cancelled }

typedef vtkMRMLNode	Superclass

Public Types inherited from vtkMRMLNode
enum	{ HierarchyModifiedEvent = 16000, IDChangedEvent = 16001, ReferenceAddedEvent, ReferenceModifiedEvent, ReferenceRemovedEvent, ReferencedNodeModifiedEvent }

typedef vtkObject	Superclass

Public Member Functions
virtual bool	CanReadInReferenceNode (vtkMRMLNode *refNode) VTK_OVERRIDE
	Return true if the reference node can be read in. More...

virtual void	Copy (vtkMRMLNode *node) VTK_OVERRIDE
	Copy the node's attributes to this object. More...

virtual vtkMRMLNode *	CreateNodeInstance () VTK_OVERRIDE
	Create instance of the default node. Like New only virtual. More...

virtual const char *	GetClassName ()

virtual const char *	GetDefaultWriteFileExtension () VTK_OVERRIDE

virtual const char *	GetNodeTagName () VTK_OVERRIDE
	Get node XML tag name (like Storage, Model) More...

virtual int	IsA (const char *type)

void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE

virtual void	ReadXMLAttributes (const char **atts) VTK_OVERRIDE
	Read node attributes from XML file. More...

void	ResetSupportedWriteFileTypes ()
	Reset supported write file types. Called when master representation is changed. More...

virtual void	WriteXML (ostream &of, int indent) VTK_OVERRIDE
	Write this node's information to a MRML file in XML format. More...

Public Member Functions inherited from vtkMRMLStorageNode
unsigned int	AddFileName (const char *fileName)
	Add in another file name to the list of file names More...

unsigned int	AddURI (const char *uri)
	Add in another URI to the list of URI's More...

virtual bool	CanWriteFromReferenceNode (vtkMRMLNode *refNode)

virtual void	ConfigureForDataExchange ()

int	FileNameIsInList (const char *fileName)

const char *	GetAbsoluteFilePath (const char *inputPath)

virtual std::string	GetCompressionParameter ()

virtual std::string	GetCompressionParameterFromDisplayName (const std::string &name)
	Returns a string representing the specified preset. More...

virtual std::vector< std::string >	GetCompressionPresetDisplayNames ()
	Returns a list of displayable names of the supported compression presets. More...

virtual const std::vector< CompressionPreset >	GetCompressionPresets ()
	Get a list of all supported compression presets. More...

virtual std::string	GetDisplayNameFromCompressionParameter (const std::string &preset)
	Returns the name of the specified preset. More...

virtual void	GetFileExtensionsFromFileTypes (vtkStringArray inputFileTypes, vtkStringArray outputFileExtensions)

virtual char *	GetFileName ()

std::string	GetFileNameWithoutExtension (const char *fileName=NULL)

std::string	GetFullNameFromFileName ()

std::string	GetFullNameFromNthFileName (int n)

const char *	GetNthFileName (int n) const
	return the nth file name, null if doesn't exist More...

const char *	GetNthURI (int n)
	Get the nth URI from the list of URI's More...

virtual int	GetNumberOfCompressionPresets ()
	Get the number of compression presets. More...

int	GetNumberOfFileNames () const
	See how many file names were generated during ExecuteInformation More...

int	GetNumberOfURIs ()
	Return how many uri names this storage node holds in it's list More...

virtual int	GetReadState ()
	Get/Set the state of reading. More...

const char *	GetReadStateAsString ()

const char *	GetStateAsString (int state)

virtual vtkMRMLStorableNode *	GetStorableNode ()

vtkTimeStamp	GetStoredTime ()

virtual std::string	GetSupportedFileExtension (const char *fileName=NULL, bool includeReadable=true, bool includeWriteable=true)

virtual vtkStringArray *	GetSupportedReadFileTypes ()

virtual vtkStringArray *	GetSupportedWriteFileTypes ()

virtual char *	GetTempFileName ()

virtual char *	GetURI ()

virtual vtkURIHandler *	GetURIHandler ()

virtual int	GetUseCompression ()

virtual char *	GetWriteFileFormat ()

virtual int	GetWriteState ()
	Get/Set the state of writing More...

const char *	GetWriteStateAsString ()

void	InvalidateFile ()

int	IsFilePathRelative (const char *filepath)

void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE

virtual void	ProcessMRMLEvents (vtkObject caller, unsigned long event, void callData) VTK_OVERRIDE
	Propagate Progress Event generated in ReadData More...

virtual int	ReadData (vtkMRMLNode *refNode, bool temporaryFile=false)

void	ResetFileNameList ()
	Clear the array of file names More...

void	ResetNthFileName (int n, const char *fileName)
	Set the nth file in FileNameList, checks that it is already defined More...

void	ResetNthURI (int n, const char *uri)
	Set the nth uri in URIList, checks that it is already defined More...

void	ResetURIList ()
	Clear the array of URIs More...

virtual void	SetCompressionParameter (std::string)
	Compression parameter that is used to save the node. More...

void	SetDataDirectory (const char *dataDirName)
	Set a new data directory for all files More...

virtual void	SetDefaultWriteFileExtension (const char *ext)

virtual void	SetFileName (const char *)

virtual void	SetReadState (int)

void	SetReadStateCancelled ()

void	SetReadStateIdle ()

void	SetReadStatePending ()

void	SetReadStateScheduled ()

void	SetReadStateTransferDone ()

void	SetReadStateTransferring ()

virtual void	SetTempFileName (const char *)
	A temporary file name used to calculate absolute paths More...

virtual void	SetURI (const char *)
	Location of the remote copy of this file. More...

virtual void	SetURIHandler (vtkURIHandler *uriHandler)

void	SetURIPrefix (const char *uriPrefix)
	Set a new URI base for all URI's More...

virtual void	SetUseCompression (int)

virtual void	SetWriteFileFormat (const char *)
	Allow to set specific file format that this node will write output. More...

virtual void	SetWriteState (int)

void	SetWriteStateCancelled ()

void	SetWriteStateIdle ()

void	SetWriteStatePending ()

void	SetWriteStateScheduled ()

void	SetWriteStateTransferDone ()

void	SetWriteStateTransferring ()

virtual int	SupportedFileType (const char *fileName)

virtual void	UseCompressionOff ()

virtual void	UseCompressionOn ()
	Use compression on write More...

virtual int	WriteData (vtkMRMLNode *refNode)

Public Member Functions inherited from vtkMRMLNode
vtkMRMLNode *	AddAndObserveNodeReferenceID (const char referenceRole, const char referencedNodeID, vtkIntArray *events=0)
	Add and observe a reference node from this node for a specific referenceRole. More...

vtkMRMLNode *	AddNodeReferenceID (const char referenceRole, const char referencedNodeID)
	Convenience method that adds a referencedNodeID at the end of the list. More...

void	AddNodeReferenceRole (const char referenceRole, const char mrmlAttributeName=0, vtkIntArray *events=0)
	Add a referenceRole. More...

virtual void	AddToSceneOff ()

virtual void	AddToSceneOn ()

virtual void	CopyReferences (vtkMRMLNode *node)
	Copy the references of the node into this. More...

void	CopyWithoutModifiedEvent (vtkMRMLNode *node)

void	CopyWithScene (vtkMRMLNode *node)
	Copy everything (including Scene and ID) from another node of the same type. More...

void	CopyWithSceneWithSingleModifiedEvent (vtkMRMLNode *node)
	Copy everything (including Scene and ID) from another node of the same type. More...

void	CopyWithSingleModifiedEvent (vtkMRMLNode *node)

void	DisableModifiedEventOff ()

void	DisableModifiedEventOn ()

virtual int	EndModify (int previousDisableModifiedEventState)
	End modifying the node. More...

virtual int	GetAddToScene ()
	node added to MRML scene. More...

const char *	GetAttribute (const char *name)
	Get value of a name value pair attribute. More...

std::vector< std::string >	GetAttributeNames ()
	Get all attribute names. More...

void	GetAttributeNames (vtkStringArray *attributeNames)
	Get all attribute names. Python-wrappable version. More...

virtual char *	GetDescription ()

virtual int	GetDisableModifiedEvent ()
	Turn on/off generating InvokeEvent for set macros. More...

virtual int	GetHideFromEditors ()
	Describes if the node is hidden. More...

virtual char *	GetID ()
	ID use by other nodes to reference this node in XML. More...

virtual int	GetInMRMLCallbackFlag ()
	Flags to avoid event loops. More...

virtual int	GetModifiedEventPending ()

virtual char *	GetName ()

vtkMRMLNode *	GetNodeReference (const char *referenceRole)

const char *	GetNodeReferenceID (const char *referenceRole)
	Utility function that returns the first node id for a specific referenceRole. More...

void	GetNodeReferenceIDs (const char referenceRole, std::vector< const char > &referencedNodeIDs)
	Return a list of the referenced node IDs. More...

void	GetNodeReferenceRoles (std::vector< std::string > &roles)

void	GetNodeReferences (const char referenceRole, std::vector< vtkMRMLNode > &nodes)
	Return a list of the referenced nodes. More...

vtkMRMLNode *	GetNthNodeReference (const char *referenceRole, int n)
	Get referenced MRML node for a specific referenceRole. More...

const char *	GetNthNodeReferenceID (const char *referenceRole, int n)
	Return the string of the Nth node ID for a specific reference role. More...

const char *	GetNthNodeReferenceRole (int n)

int	GetNumberOfNodeReferenceRoles ()

int	GetNumberOfNodeReferences (const char *referenceRole)
	Return the number of node IDs for a specific reference role (and nodes as they always have the same size). More...

virtual int	GetSaveWithScene ()
	Save node with MRML scene. More...

virtual vtkMRMLScene *	GetScene ()
	Only the scene can set itself to the node. More...

virtual int	GetSelectable ()
	Describes if the node is selectable. More...

virtual int	GetSelected ()
	Get/Set for Selected. More...

virtual char *	GetSingletonTag ()

bool	HasNodeReferenceID (const char referenceRole, const char referencedNodeID)
	Return true if referencedNodeID is in the node ID list for a specific referenceRole. More...

virtual void	HideFromEditorsOff ()

virtual void	HideFromEditorsOn ()

virtual void	InvokeCustomModifiedEvent (int eventId, void *callData=NULL)
	This method allows the node to compress events. More...

virtual int	InvokePendingModifiedEvent ()
	Invokes any modified events that are `pending`. More...

bool	IsSingleton ()

virtual void	Modified () VTK_OVERRIDE
	Customized version of Modified() allowing to compress vtkCommand::ModifiedEvent. More...

virtual void	OnNodeAddedToScene ()

void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE

virtual void	ProcessChildNode (vtkMRMLNode *)
	Set dependencies between this node and a child node when parsing XML file. More...

void	RemoveAttribute (const char *name)
	Remove attribute with the specified name. More...

void	RemoveNodeReferenceIDs (const char *referenceRole)
	Remove all node IDs and associated nodes for a specific referenceRole. More...

void	RemoveNthNodeReferenceID (const char *referenceRole, int n)
	Convenience method that removes the Nth node ID from the list. More...

virtual void	Reset (vtkMRMLNode *defaultNode)
	Reset node attributes to the initial state as defined in the constructor or the passed default node. More...

virtual void	SaveWithSceneOff ()

virtual void	SaveWithSceneOn ()

virtual void	SelectableOff ()

virtual void	SelectableOn ()

virtual void	SelectedOff ()

virtual void	SelectedOn ()

virtual void	SetAddToScene (int)

void	SetAddToSceneNoModify (int value)

vtkMRMLNode *	SetAndObserveNodeReferenceID (const char referenceRole, const char referencedNodeID, vtkIntArray *events=0)
	Set and observe a reference node from this node for a specific referenceRole. More...

vtkMRMLNode *	SetAndObserveNthNodeReferenceID (const char referenceRole, int n, const char referencedNodeID, vtkIntArray *events=0)
	Set and observe the Nth node ID for a specific reference role. More...

void	SetAttribute (const char name, const char value)
	Set a name value pair attribute. More...

virtual void	SetDescription (const char *)
	Text description of this node, to be set by the user. More...

void	SetDisableModifiedEvent (int onOff)

virtual void	SetHideFromEditors (int)

void	SetInMRMLCallbackFlag (int flag)

virtual void	SetName (const char *)
	Name of this node, to be set by the user. More...

vtkMRMLNode *	SetNodeReferenceID (const char referenceRole, const char referencedNodeID)
	Set a reference to a node with specified nodeID from this node for a specific referenceRole. More...

vtkMRMLNode *	SetNthNodeReferenceID (const char referenceRole, int n, const char referencedNodeID)
	Set a N-th reference from this node with specified referencedNodeID for a specific referenceRole. More...

virtual void	SetSaveWithScene (int)

virtual void	SetScene (vtkMRMLScene *scene)

virtual void	SetSceneReferences ()
	Update the references of the node to the scene. More...

virtual void	SetSelectable (int)

virtual void	SetSelected (int)

void	SetSingletonOff ()

void	SetSingletonOn ()

virtual void	SetSingletonTag (const char *)
	Tag that make this node a singleton in the scene. More...

virtual int	StartModify ()
	Start modifying the node. Disable Modify events. More...

virtual void	UpdateReferenceID (const char oldID, const char newID)
	Update the stored reference to another node in the scene. More...

virtual void	UpdateReferences ()
	The method should remove all pointers and observations to all nodes that are not in the scene anymore. More...

virtual void	UpdateScene (vtkMRMLScene *)

const char *	URLDecodeString (const char *inString)
	Decode a URL string. More...

const char *	URLEncodeString (const char *inString)
	Encode a URL string. More...

virtual void	WriteNodeBodyXML (ostream &of, int indent)
	Write this node's body to a MRML file in XML format. More...

std::string	XMLAttributeDecodeString (const std::string &inString)
	Decode an XML attribute string. More...

std::string	XMLAttributeEncodeString (const std::string &inString)
	Encode an XML attribute string (replaces special characters by code sequences) More...

Static Public Member Functions
static int	IsTypeOf (const char *type)

static vtkMRMLSegmentationStorageNode *	New ()

static vtkMRMLSegmentationStorageNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLStorageNode
static std::string	GetLowercaseExtensionFromFileName (const std::string &filename)

static int	IsTypeOf (const char *type)

static vtkMRMLStorageNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLNode
static int	IsTypeOf (const char *type)

static vtkMRMLNode *	SafeDownCast (vtkObject *o)

Protected Member Functions
void	AddPolyDataFileNames (std::string path, vtkSegmentation *segmentation)

void	CreateRepresentationsBySerializedNames (vtkSegmentation *segmentation, std::string representationNames)
	Create representations based on serialized representation names string. More...

vtkMRMLSegmentationNode *	GetAssociatedDataNode ()
	Get data node that is associated with this storage node. More...

virtual void	InitializeSupportedReadFileTypes () VTK_OVERRIDE
	Initialize all the supported read file types. More...

virtual void	InitializeSupportedWriteFileTypes () VTK_OVERRIDE
	Initialize all the supported write file types. More...

virtual int	ReadBinaryLabelmapRepresentation (vtkMRMLSegmentationNode *segmentationNode, std::string path)
	Read binary labelmap representation from nrrd file (3D spatial + list) More...

virtual int	ReadBinaryLabelmapRepresentation4DSpatial (vtkMRMLSegmentationNode *segmentationNode, std::string path)
	Read binary labelmap representation from 4D spatial nrrd file - obsolete. More...

virtual int	ReadDataInternal (vtkMRMLNode *refNode) VTK_OVERRIDE
	Read data and set it in the referenced node. More...

virtual int	ReadPolyDataRepresentation (vtkMRMLSegmentationNode *segmentationNode, std::string path)
	Read a poly data representation to file. More...

std::string	SerializeContainedRepresentationNames (vtkSegmentation *segmentation)
	Serialize contained representation names in a string. More...

	vtkMRMLSegmentationStorageNode ()

virtual int	WriteBinaryLabelmapRepresentation (vtkMRMLSegmentationNode *segmentationNode, std::string path)
	Write binary labelmap representation to file. More...

virtual int	WriteDataInternal (vtkMRMLNode *refNode) VTK_OVERRIDE
	Write data from a referenced node. More...

virtual int	WritePolyDataRepresentation (vtkMRMLSegmentationNode *segmentationNode, std::string path)
	Write a poly data representation to file. More...

	~vtkMRMLSegmentationStorageNode ()

Protected Member Functions inherited from vtkMRMLStorageNode
void	operator= (const vtkMRMLStorageNode &)

void	StageReadData (vtkMRMLNode *refNode)

void	StageWriteData (vtkMRMLNode *refNode)

virtual void	UpdateCompressionPresets ()

	vtkMRMLStorageNode ()

	vtkMRMLStorageNode (const vtkMRMLStorageNode &)

	~vtkMRMLStorageNode ()

Protected Member Functions inherited from vtkMRMLNode
virtual const char *	GetMRMLAttributeNameFromReferenceRole (const char *refRole)
	Return the mrml attribute name (if found) associated with a reference role. Return 0 otherwise. More...

virtual const char *	GetReferenceRoleFromMRMLAttributeName (const char *attName)
	Return the reference role (if found) associated with the attribute name found in a MRML scene file. Return 0 otherwise. More...

virtual char *	GetTempURLString ()

void	GetUpdatedReferencedNodeEventList (int &oldReferencedNodeUseCount, int &newReferencedNodeUseCount, vtkIntArray oldConsolidatedEventList, vtkIntArray newConsolidatedEventList, vtkMRMLNode oldReferencedNode, vtkMRMLNode newReferencedNode, vtkMRMLNodeReference referenceToIgnore, vtkIntArray newEvents)

virtual void	InvalidateNodeReferences ()

virtual bool	IsReferenceRoleGeneric (const char *refRole)
	Return true if the reference role is generic (ends with '/') or false otherwise. More...

virtual void	OnNodeReferenceAdded (vtkMRMLNodeReference *reference)

virtual void	OnNodeReferenceModified (vtkMRMLNodeReference *reference)
	Called when a referenced node pointer is modified. More...

virtual void	OnNodeReferenceRemoved (vtkMRMLNodeReference *reference)
	Called when a referenced node pointer is removed (set to NULL). More...

void	operator= (const vtkMRMLNode &)

void	ParseReferencesAttribute (const char *attValue, std::map< std::string, std::string > &references)

virtual void	SetTempURLString (const char *)
	Get/Set the string used to manage encoding/decoding of strings/URLs with special characters. More...

vtkMRMLNode *	UpdateNodeReferenceEventObserver (vtkMRMLNode oldReferencedNode, vtkMRMLNode newReferencedNode, vtkIntArray newEvents, vtkMRMLNodeReference referenceToIgnore)

virtual void	UpdateNodeReferences (const char *referenceRole=NULL)

virtual void	UpdateNthNodeReference (const char *referenceRole, int n)

	vtkMRMLNode ()

	vtkMRMLNode (const vtkMRMLNode &)

virtual	~vtkMRMLNode ()
	critical to have a virtual destructor! More...

Static Protected Member Functions
static std::string	GetImageExtentAsString (vtkOrientedImageData *image)

static std::string	GetImageExtentAsString (int extent[6])

static void	GetImageExtentFromString (int extent[6], std::string extentValue)

static std::string	GetSegmentationMetaDataKey (const std::string &keyName)

static std::string	GetSegmentColorAsString (vtkMRMLSegmentationNode *segmentationNode, const std::string &segmentId)

static void	GetSegmentColorFromString (double color[3], std::string colorString)

static std::string	GetSegmentMetaDataKey (int segmentIndex, const std::string &keyName)

static std::string	GetSegmentTagsAsString (vtkSegment *segment)

static void	SetSegmentTagsFromString (vtkSegment *segment, std::string tagsValue)

Static Protected Member Functions inherited from vtkMRMLNode
static void	MRMLCallback (vtkObject caller, unsigned long eid, void clientData, void *callData)

Additional Inherited Members
Protected Types inherited from vtkMRMLNode
typedef std::map< std::string, std::string >	AttributesType

typedef std::map< std::string, vtkSmartPointer< vtkIntArray > >	NodeReferenceEventsType

typedef std::vector< vtkSmartPointer< vtkMRMLNodeReference > >	NodeReferenceListType

typedef std::map< std::string, NodeReferenceListType >	NodeReferencesType

Protected Attributes inherited from vtkMRMLStorageNode
std::string	CompressionParameter

std::vector< CompressionPreset >	CompressionPresets

std::string	DefaultWriteFileExtension
	List of supported extensions to write in. More...

char *	FileName

std::vector< std::string >	FileNameList
	An array of file names, should contain the FileName but may not More...

vtkWeakPointer< vtkMRMLStorableNode >	LastFoundStorableNode

int	ReadState

vtkTimeStamp *	StoredTime

vtkStringArray *	SupportedReadFileTypes
	List of supported extensions to read in. More...

vtkStringArray *	SupportedWriteFileTypes

char *	TempFileName

char *	URI

vtkURIHandler *	URIHandler

std::vector< std::string >	URIList
	An array of URI's, should contain the URI but may not More...

int	UseCompression

char *	WriteFileFormat

int	WriteState

Protected Attributes inherited from vtkMRMLNode
int	AddToScene

AttributesType	Attributes

char *	Description

int	HideFromEditors

char *	ID

int	InMRMLCallbackFlag
	Flag to avoid event loops More...

vtkCallbackCommand *	MRMLCallbackCommand
	Holders for MRML callbacks. More...

vtkObserverManager *	MRMLObserverManager

char *	Name

NodeReferenceEventsType	NodeReferenceEvents

std::map< std::string, std::string >	NodeReferenceMRMLAttributeNames

NodeReferencesType	NodeReferences

int	SaveWithScene

vtkWeakPointer< vtkMRMLScene >	Scene

int	Selectable

int	Selected

Detailed Description

MRML node for segmentation storage on disk.

Storage nodes has methods to read/write segmentations to/from disk.

Definition at line 49 of file vtkMRMLSegmentationStorageNode.h.

Member Typedef Documentation

◆ Superclass

typedef vtkMRMLStorageNode vtkMRMLSegmentationStorageNode::Superclass

Definition at line 61 of file vtkMRMLSegmentationStorageNode.h.

Constructor & Destructor Documentation

◆ vtkMRMLSegmentationStorageNode()

vtkMRMLSegmentationStorageNode::vtkMRMLSegmentationStorageNode ( )

protected

◆ ~vtkMRMLSegmentationStorageNode()

vtkMRMLSegmentationStorageNode::~vtkMRMLSegmentationStorageNode ( )

protected

Member Function Documentation

◆ AddPolyDataFileNames()

void vtkMRMLSegmentationStorageNode::AddPolyDataFileNames	(	std::string	path,
		vtkSegmentation *	segmentation
	)

protected

Add all files corresponding to poly data representation to the storage node (multiblock dataset writes segments to individual files in a separate folder)

◆ CanReadInReferenceNode()

virtual bool vtkMRMLSegmentationStorageNode::CanReadInReferenceNode ( vtkMRMLNode * refNode )

virtual

Return true if the reference node can be read in.

Implements vtkMRMLStorageNode.

◆ Copy()

virtual void vtkMRMLSegmentationStorageNode::Copy ( vtkMRMLNode * node )

virtual

Copy the node's attributes to this object.

Reimplemented from vtkMRMLStorageNode.

◆ CreateNodeInstance()

virtual vtkMRMLNode* vtkMRMLSegmentationStorageNode::CreateNodeInstance ( )

virtual

Create instance of the default node. Like New only virtual.

Note: Subclasses should implement this method

Implements vtkMRMLStorageNode.

◆ CreateRepresentationsBySerializedNames()

void vtkMRMLSegmentationStorageNode::CreateRepresentationsBySerializedNames	(	vtkSegmentation *	segmentation,
		std::string	representationNames
	)

protected

Create representations based on serialized representation names string.

◆ GetAssociatedDataNode()

vtkMRMLSegmentationNode* vtkMRMLSegmentationStorageNode::GetAssociatedDataNode ( )

protected

Get data node that is associated with this storage node.

◆ GetClassName()

virtual const char* vtkMRMLSegmentationStorageNode::GetClassName ( )

virtual

Reimplemented from vtkMRMLStorageNode.

◆ GetDefaultWriteFileExtension()

virtual const char* vtkMRMLSegmentationStorageNode::GetDefaultWriteFileExtension ( )

virtual

Return a default file extension for writing File write extension is determined dynamically from master representation type.

Reimplemented from vtkMRMLStorageNode.

◆ GetImageExtentAsString() [1/2]

static std::string vtkMRMLSegmentationStorageNode::GetImageExtentAsString ( vtkOrientedImageData * image )

staticprotected

◆ GetImageExtentAsString() [2/2]

static std::string vtkMRMLSegmentationStorageNode::GetImageExtentAsString ( int extent[6] )

staticprotected

◆ GetImageExtentFromString()

static void vtkMRMLSegmentationStorageNode::GetImageExtentFromString	(	int	extent[6],
		std::string	extentValue
	)

staticprotected

◆ GetNodeTagName()

virtual const char* vtkMRMLSegmentationStorageNode::GetNodeTagName ( )

inlinevirtual

Get node XML tag name (like Storage, Model)

Implements vtkMRMLStorageNode.

Definition at line 76 of file vtkMRMLSegmentationStorageNode.h.

◆ GetSegmentationMetaDataKey()

static std::string vtkMRMLSegmentationStorageNode::GetSegmentationMetaDataKey ( const std::string & keyName )

staticprotected

◆ GetSegmentColorAsString()

static std::string vtkMRMLSegmentationStorageNode::GetSegmentColorAsString	(	vtkMRMLSegmentationNode *	segmentationNode,
		const std::string &	segmentId
	)

staticprotected

◆ GetSegmentColorFromString()

static void vtkMRMLSegmentationStorageNode::GetSegmentColorFromString	(	double	color[3],
		std::string	colorString
	)

staticprotected

◆ GetSegmentMetaDataKey()

static std::string vtkMRMLSegmentationStorageNode::GetSegmentMetaDataKey	(	int	segmentIndex,
		const std::string &	keyName
	)

staticprotected

◆ GetSegmentTagsAsString()

static std::string vtkMRMLSegmentationStorageNode::GetSegmentTagsAsString ( vtkSegment * segment )

staticprotected

◆ InitializeSupportedReadFileTypes()

virtual void vtkMRMLSegmentationStorageNode::InitializeSupportedReadFileTypes ( )

protectedvirtual

Initialize all the supported read file types.

Reimplemented from vtkMRMLStorageNode.

◆ InitializeSupportedWriteFileTypes()

virtual void vtkMRMLSegmentationStorageNode::InitializeSupportedWriteFileTypes ( )

protectedvirtual

Initialize all the supported write file types.

Reimplemented from vtkMRMLStorageNode.

◆ IsA()

virtual int vtkMRMLSegmentationStorageNode::IsA ( const char * type )

virtual

Reimplemented from vtkMRMLStorageNode.

◆ IsTypeOf()

static int vtkMRMLSegmentationStorageNode::IsTypeOf ( const char * type )

static

◆ New()

static vtkMRMLSegmentationStorageNode* vtkMRMLSegmentationStorageNode::New ( )

static

◆ PrintSelf()

void vtkMRMLSegmentationStorageNode::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

◆ ReadBinaryLabelmapRepresentation()

virtual int vtkMRMLSegmentationStorageNode::ReadBinaryLabelmapRepresentation	(	vtkMRMLSegmentationNode *	segmentationNode,
		std::string	path
	)

protectedvirtual

Read binary labelmap representation from nrrd file (3D spatial + list)

◆ ReadBinaryLabelmapRepresentation4DSpatial()

virtual int vtkMRMLSegmentationStorageNode::ReadBinaryLabelmapRepresentation4DSpatial	(	vtkMRMLSegmentationNode *	segmentationNode,
		std::string	path
	)

protectedvirtual

Read binary labelmap representation from 4D spatial nrrd file - obsolete.

◆ ReadDataInternal()

virtual int vtkMRMLSegmentationStorageNode::ReadDataInternal ( vtkMRMLNode * refNode )

protectedvirtual

Read data and set it in the referenced node.

Reimplemented from vtkMRMLStorageNode.

◆ ReadPolyDataRepresentation()

virtual int vtkMRMLSegmentationStorageNode::ReadPolyDataRepresentation	(	vtkMRMLSegmentationNode *	segmentationNode,
		std::string	path
	)

protectedvirtual

Read a poly data representation to file.

◆ ReadXMLAttributes()

virtual void vtkMRMLSegmentationStorageNode::ReadXMLAttributes ( const char ** atts )

virtual

Read node attributes from XML file.

Reimplemented from vtkMRMLStorageNode.

◆ ResetSupportedWriteFileTypes()

void vtkMRMLSegmentationStorageNode::ResetSupportedWriteFileTypes ( )

Reset supported write file types. Called when master representation is changed.

◆ SafeDownCast()

static vtkMRMLSegmentationStorageNode* vtkMRMLSegmentationStorageNode::SafeDownCast ( vtkObject * o )

static

◆ SerializeContainedRepresentationNames()

std::string vtkMRMLSegmentationStorageNode::SerializeContainedRepresentationNames ( vtkSegmentation * segmentation )

protected

Serialize contained representation names in a string.

◆ SetSegmentTagsFromString()

static void vtkMRMLSegmentationStorageNode::SetSegmentTagsFromString	(	vtkSegment *	segment,
		std::string	tagsValue
	)

staticprotected

◆ WriteBinaryLabelmapRepresentation()

virtual int vtkMRMLSegmentationStorageNode::WriteBinaryLabelmapRepresentation	(	vtkMRMLSegmentationNode *	segmentationNode,
		std::string	path
	)

protectedvirtual

Write binary labelmap representation to file.

◆ WriteDataInternal()

virtual int vtkMRMLSegmentationStorageNode::WriteDataInternal ( vtkMRMLNode * refNode )

protectedvirtual

Write data from a referenced node.

Reimplemented from vtkMRMLStorageNode.

◆ WritePolyDataRepresentation()

virtual int vtkMRMLSegmentationStorageNode::WritePolyDataRepresentation	(	vtkMRMLSegmentationNode *	segmentationNode,
		std::string	path
	)

protectedvirtual

Write a poly data representation to file.

◆ WriteXML()

virtual void vtkMRMLSegmentationStorageNode::WriteXML	(	ostream &	of,
		int	indent
	)

virtual

Write this node's information to a MRML file in XML format.

Reimplemented from vtkMRMLStorageNode.

The documentation for this class was generated from the following file:

Libs/MRML/Core/vtkMRMLSegmentationStorageNode.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Static Protected Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ Superclass

Constructor & Destructor Documentation

◆ vtkMRMLSegmentationStorageNode()

◆ ~vtkMRMLSegmentationStorageNode()

Member Function Documentation

◆ AddPolyDataFileNames()

◆ CanReadInReferenceNode()

◆ Copy()

◆ CreateNodeInstance()

◆ CreateRepresentationsBySerializedNames()

◆ GetAssociatedDataNode()

◆ GetClassName()

◆ GetDefaultWriteFileExtension()

◆ GetImageExtentAsString() [1/2]

◆ GetImageExtentAsString() [2/2]

◆ GetImageExtentFromString()

◆ GetNodeTagName()

◆ GetSegmentationMetaDataKey()

◆ GetSegmentColorAsString()

◆ GetSegmentColorFromString()

◆ GetSegmentMetaDataKey()

◆ GetSegmentTagsAsString()

◆ InitializeSupportedReadFileTypes()

◆ InitializeSupportedWriteFileTypes()

◆ IsA()

◆ IsTypeOf()

◆ New()

◆ PrintSelf()

◆ ReadBinaryLabelmapRepresentation()

◆ ReadBinaryLabelmapRepresentation4DSpatial()

◆ ReadDataInternal()

◆ ReadPolyDataRepresentation()

◆ ReadXMLAttributes()

◆ ResetSupportedWriteFileTypes()

◆ SafeDownCast()

◆ SerializeContainedRepresentationNames()

◆ SetSegmentTagsFromString()

◆ WriteBinaryLabelmapRepresentation()

◆ WriteDataInternal()

◆ WritePolyDataRepresentation()

◆ WriteXML()