Slicer
4.10
Slicer is a multi-platform, free and open source software package for visualization and medical image computing
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MRML node for representing a volume storage. More...
#include <Libs/MRML/Core/vtkMRMLNRRDStorageNode.h>
Public Types | |
typedef vtkMRMLStorageNode | Superclass |
Public Types inherited from vtkMRMLStorageNode | |
enum | { Idle, Pending, Scheduled, Transferring, TransferDone, Cancelled } |
typedef vtkMRMLNode | Superclass |
Public Types inherited from vtkMRMLNode | |
enum | { HierarchyModifiedEvent = 16000, IDChangedEvent = 16001, ReferenceAddedEvent, ReferenceModifiedEvent, ReferenceRemovedEvent, ReferencedNodeModifiedEvent } |
typedef vtkObject | Superclass |
Public Member Functions | |
virtual bool | CanReadInReferenceNode (vtkMRMLNode *refNode) VTK_OVERRIDE |
Return true if the node can be read in. More... | |
virtual void | ConfigureForDataExchange () VTK_OVERRIDE |
virtual void | Copy (vtkMRMLNode *node) VTK_OVERRIDE |
Copy the node's attributes to this object More... | |
virtual vtkMRMLNode * | CreateNodeInstance () VTK_OVERRIDE |
Create instance of the default node. Like New only virtual. More... | |
virtual int | GetCenterImage () |
Center image on read More... | |
virtual const char * | GetClassName () |
std::string | GetCompressionParameterFastest () |
Compression parameter corresponding to minimum compression (fast) More... | |
std::string | GetCompressionParameterMinimumSize () |
Compression parameter corresponding to maximum compression (slow) More... | |
std::string | GetCompressionParameterNormal () |
Compression parameter corresponding to normal compression. More... | |
virtual const char * | GetNodeTagName () VTK_OVERRIDE |
Get node XML tag name (like Storage, Model) More... | |
virtual int | IsA (const char *type) |
int | ParseDiffusionInformation (vtkTeemNRRDReader *reader, vtkDoubleArray *grad, vtkDoubleArray *bvalues) |
Access the nrrd header fields to create a diffusion gradient table More... | |
void | PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE |
virtual void | ReadXMLAttributes (const char **atts) VTK_OVERRIDE |
Read node attributes from XML file More... | |
virtual void | SetCenterImage (int) |
virtual void | WriteXML (ostream &of, int indent) VTK_OVERRIDE |
Write this node's information to a MRML file in XML format. More... | |
Public Member Functions inherited from vtkMRMLStorageNode | |
unsigned int | AddFileName (const char *fileName) |
Add in another file name to the list of file names More... | |
unsigned int | AddURI (const char *uri) |
Add in another URI to the list of URI's More... | |
virtual bool | CanWriteFromReferenceNode (vtkMRMLNode *refNode) |
int | FileNameIsInList (const char *fileName) |
const char * | GetAbsoluteFilePath (const char *inputPath) |
virtual std::string | GetCompressionParameter () |
virtual std::string | GetCompressionParameterFromDisplayName (const std::string &name) |
Returns a string representing the specified preset. More... | |
virtual std::vector< std::string > | GetCompressionPresetDisplayNames () |
Returns a list of displayable names of the supported compression presets. More... | |
virtual const std::vector< CompressionPreset > | GetCompressionPresets () |
Get a list of all supported compression presets. More... | |
virtual const char * | GetDefaultWriteFileExtension () |
Return default file extension for writing. More... | |
virtual std::string | GetDisplayNameFromCompressionParameter (const std::string &preset) |
Returns the name of the specified preset. More... | |
virtual void | GetFileExtensionsFromFileTypes (vtkStringArray *inputFileTypes, vtkStringArray *outputFileExtensions) |
virtual char * | GetFileName () |
std::string | GetFileNameWithoutExtension (const char *fileName=NULL) |
std::string | GetFullNameFromFileName () |
std::string | GetFullNameFromNthFileName (int n) |
const char * | GetNthFileName (int n) const |
return the nth file name, null if doesn't exist More... | |
const char * | GetNthURI (int n) |
Get the nth URI from the list of URI's More... | |
virtual int | GetNumberOfCompressionPresets () |
Get the number of compression presets. More... | |
int | GetNumberOfFileNames () const |
See how many file names were generated during ExecuteInformation More... | |
int | GetNumberOfURIs () |
Return how many uri names this storage node holds in it's list More... | |
virtual int | GetReadState () |
Get/Set the state of reading. More... | |
const char * | GetReadStateAsString () |
const char * | GetStateAsString (int state) |
virtual vtkMRMLStorableNode * | GetStorableNode () |
vtkTimeStamp | GetStoredTime () |
virtual std::string | GetSupportedFileExtension (const char *fileName=NULL, bool includeReadable=true, bool includeWriteable=true) |
virtual vtkStringArray * | GetSupportedReadFileTypes () |
virtual vtkStringArray * | GetSupportedWriteFileTypes () |
virtual char * | GetTempFileName () |
virtual char * | GetURI () |
virtual vtkURIHandler * | GetURIHandler () |
virtual int | GetUseCompression () |
virtual char * | GetWriteFileFormat () |
virtual int | GetWriteState () |
Get/Set the state of writing More... | |
const char * | GetWriteStateAsString () |
void | InvalidateFile () |
int | IsFilePathRelative (const char *filepath) |
void | PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE |
virtual void | ProcessMRMLEvents (vtkObject *caller, unsigned long event, void *callData) VTK_OVERRIDE |
Propagate Progress Event generated in ReadData More... | |
virtual int | ReadData (vtkMRMLNode *refNode, bool temporaryFile=false) |
void | ResetFileNameList () |
Clear the array of file names More... | |
void | ResetNthFileName (int n, const char *fileName) |
Set the nth file in FileNameList, checks that it is already defined More... | |
void | ResetNthURI (int n, const char *uri) |
Set the nth uri in URIList, checks that it is already defined More... | |
void | ResetURIList () |
Clear the array of URIs More... | |
virtual void | SetCompressionParameter (std::string) |
Compression parameter that is used to save the node. More... | |
void | SetDataDirectory (const char *dataDirName) |
Set a new data directory for all files More... | |
virtual void | SetDefaultWriteFileExtension (const char *ext) |
virtual void | SetFileName (const char *) |
virtual void | SetReadState (int) |
void | SetReadStateCancelled () |
void | SetReadStateIdle () |
void | SetReadStatePending () |
void | SetReadStateScheduled () |
void | SetReadStateTransferDone () |
void | SetReadStateTransferring () |
virtual void | SetTempFileName (const char *) |
A temporary file name used to calculate absolute paths More... | |
virtual void | SetURI (const char *) |
Location of the remote copy of this file. More... | |
virtual void | SetURIHandler (vtkURIHandler *uriHandler) |
void | SetURIPrefix (const char *uriPrefix) |
Set a new URI base for all URI's More... | |
virtual void | SetUseCompression (int) |
virtual void | SetWriteFileFormat (const char *) |
Allow to set specific file format that this node will write output. More... | |
virtual void | SetWriteState (int) |
void | SetWriteStateCancelled () |
void | SetWriteStateIdle () |
void | SetWriteStatePending () |
void | SetWriteStateScheduled () |
void | SetWriteStateTransferDone () |
void | SetWriteStateTransferring () |
virtual int | SupportedFileType (const char *fileName) |
virtual void | UseCompressionOff () |
virtual void | UseCompressionOn () |
Use compression on write More... | |
virtual int | WriteData (vtkMRMLNode *refNode) |
Public Member Functions inherited from vtkMRMLNode | |
vtkMRMLNode * | AddAndObserveNodeReferenceID (const char *referenceRole, const char *referencedNodeID, vtkIntArray *events=0) |
Add and observe a reference node from this node for a specific referenceRole. More... | |
vtkMRMLNode * | AddNodeReferenceID (const char *referenceRole, const char *referencedNodeID) |
Convenience method that adds a referencedNodeID at the end of the list. More... | |
void | AddNodeReferenceRole (const char *referenceRole, const char *mrmlAttributeName=0, vtkIntArray *events=0) |
Add a referenceRole. More... | |
virtual void | AddToSceneOff () |
virtual void | AddToSceneOn () |
virtual void | CopyReferences (vtkMRMLNode *node) |
Copy the references of the node into this. More... | |
void | CopyWithoutModifiedEvent (vtkMRMLNode *node) |
void | CopyWithScene (vtkMRMLNode *node) |
Copy everything (including Scene and ID) from another node of the same type. More... | |
void | CopyWithSceneWithSingleModifiedEvent (vtkMRMLNode *node) |
Copy everything (including Scene and ID) from another node of the same type. More... | |
void | CopyWithSingleModifiedEvent (vtkMRMLNode *node) |
void | DisableModifiedEventOff () |
void | DisableModifiedEventOn () |
virtual int | EndModify (int previousDisableModifiedEventState) |
End modifying the node. More... | |
virtual int | GetAddToScene () |
node added to MRML scene. More... | |
const char * | GetAttribute (const char *name) |
Get value of a name value pair attribute. More... | |
std::vector< std::string > | GetAttributeNames () |
Get all attribute names. More... | |
void | GetAttributeNames (vtkStringArray *attributeNames) |
Get all attribute names. Python-wrappable version. More... | |
virtual char * | GetDescription () |
virtual int | GetDisableModifiedEvent () |
Turn on/off generating InvokeEvent for set macros. More... | |
virtual int | GetHideFromEditors () |
Describes if the node is hidden. More... | |
virtual char * | GetID () |
ID use by other nodes to reference this node in XML. More... | |
virtual int | GetInMRMLCallbackFlag () |
Flags to avoid event loops. More... | |
virtual int | GetModifiedEventPending () |
virtual char * | GetName () |
vtkMRMLNode * | GetNodeReference (const char *referenceRole) |
const char * | GetNodeReferenceID (const char *referenceRole) |
Utility function that returns the first node id for a specific referenceRole. More... | |
void | GetNodeReferenceIDs (const char *referenceRole, std::vector< const char *> &referencedNodeIDs) |
Return a list of the referenced node IDs. More... | |
void | GetNodeReferenceRoles (std::vector< std::string > &roles) |
void | GetNodeReferences (const char *referenceRole, std::vector< vtkMRMLNode *> &nodes) |
Return a list of the referenced nodes. More... | |
vtkMRMLNode * | GetNthNodeReference (const char *referenceRole, int n) |
Get referenced MRML node for a specific referenceRole. More... | |
const char * | GetNthNodeReferenceID (const char *referenceRole, int n) |
Return the string of the Nth node ID for a specific reference role. More... | |
const char * | GetNthNodeReferenceRole (int n) |
int | GetNumberOfNodeReferenceRoles () |
int | GetNumberOfNodeReferences (const char *referenceRole) |
Return the number of node IDs for a specific reference role (and nodes as they always have the same size). More... | |
virtual int | GetSaveWithScene () |
Save node with MRML scene. More... | |
virtual vtkMRMLScene * | GetScene () |
Only the scene can set itself to the node. More... | |
virtual int | GetSelectable () |
Describes if the node is selectable. More... | |
virtual int | GetSelected () |
Get/Set for Selected. More... | |
virtual char * | GetSingletonTag () |
bool | HasNodeReferenceID (const char *referenceRole, const char *referencedNodeID) |
Return true if referencedNodeID is in the node ID list for a specific referenceRole. More... | |
virtual void | HideFromEditorsOff () |
virtual void | HideFromEditorsOn () |
virtual void | InvokeCustomModifiedEvent (int eventId, void *callData=NULL) |
This method allows the node to compress events. More... | |
virtual int | InvokePendingModifiedEvent () |
Invokes any modified events that are pending . More... | |
bool | IsSingleton () |
virtual void | Modified () VTK_OVERRIDE |
Customized version of Modified() allowing to compress vtkCommand::ModifiedEvent. More... | |
virtual void | OnNodeAddedToScene () |
void | PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE |
virtual void | ProcessChildNode (vtkMRMLNode *) |
Set dependencies between this node and a child node when parsing XML file. More... | |
void | RemoveAttribute (const char *name) |
Remove attribute with the specified name. More... | |
void | RemoveNodeReferenceIDs (const char *referenceRole) |
Remove all node IDs and associated nodes for a specific referenceRole. More... | |
void | RemoveNthNodeReferenceID (const char *referenceRole, int n) |
Convenience method that removes the Nth node ID from the list. More... | |
virtual void | Reset (vtkMRMLNode *defaultNode) |
Reset node attributes to the initial state as defined in the constructor or the passed default node. More... | |
virtual void | SaveWithSceneOff () |
virtual void | SaveWithSceneOn () |
virtual void | SelectableOff () |
virtual void | SelectableOn () |
virtual void | SelectedOff () |
virtual void | SelectedOn () |
virtual void | SetAddToScene (int) |
void | SetAddToSceneNoModify (int value) |
vtkMRMLNode * | SetAndObserveNodeReferenceID (const char *referenceRole, const char *referencedNodeID, vtkIntArray *events=0) |
Set and observe a reference node from this node for a specific referenceRole. More... | |
vtkMRMLNode * | SetAndObserveNthNodeReferenceID (const char *referenceRole, int n, const char *referencedNodeID, vtkIntArray *events=0) |
Set and observe the Nth node ID for a specific reference role. More... | |
void | SetAttribute (const char *name, const char *value) |
Set a name value pair attribute. More... | |
virtual void | SetDescription (const char *) |
Text description of this node, to be set by the user. More... | |
void | SetDisableModifiedEvent (int onOff) |
virtual void | SetHideFromEditors (int) |
void | SetInMRMLCallbackFlag (int flag) |
virtual void | SetName (const char *) |
Name of this node, to be set by the user. More... | |
vtkMRMLNode * | SetNodeReferenceID (const char *referenceRole, const char *referencedNodeID) |
Set a reference to a node with specified nodeID from this node for a specific referenceRole. More... | |
vtkMRMLNode * | SetNthNodeReferenceID (const char *referenceRole, int n, const char *referencedNodeID) |
Set a N-th reference from this node with specified referencedNodeID for a specific referenceRole. More... | |
virtual void | SetSaveWithScene (int) |
virtual void | SetScene (vtkMRMLScene *scene) |
virtual void | SetSceneReferences () |
Update the references of the node to the scene. More... | |
virtual void | SetSelectable (int) |
virtual void | SetSelected (int) |
void | SetSingletonOff () |
void | SetSingletonOn () |
virtual void | SetSingletonTag (const char *) |
Tag that make this node a singleton in the scene. More... | |
virtual int | StartModify () |
Start modifying the node. Disable Modify events. More... | |
virtual void | UpdateReferenceID (const char *oldID, const char *newID) |
Update the stored reference to another node in the scene. More... | |
virtual void | UpdateReferences () |
The method should remove all pointers and observations to all nodes that are not in the scene anymore. More... | |
virtual void | UpdateScene (vtkMRMLScene *) |
const char * | URLDecodeString (const char *inString) |
Decode a URL string. More... | |
const char * | URLEncodeString (const char *inString) |
Encode a URL string. More... | |
virtual void | WriteNodeBodyXML (ostream &of, int indent) |
Write this node's body to a MRML file in XML format. More... | |
std::string | XMLAttributeDecodeString (const std::string &inString) |
Decode an XML attribute string. More... | |
std::string | XMLAttributeEncodeString (const std::string &inString) |
Encode an XML attribute string (replaces special characters by code sequences) More... | |
Static Public Member Functions | |
static int | IsTypeOf (const char *type) |
static vtkMRMLNRRDStorageNode * | New () |
static vtkMRMLNRRDStorageNode * | SafeDownCast (vtkObject *o) |
Static Public Member Functions inherited from vtkMRMLStorageNode | |
static std::string | GetLowercaseExtensionFromFileName (const std::string &filename) |
static int | IsTypeOf (const char *type) |
static vtkMRMLStorageNode * | SafeDownCast (vtkObject *o) |
Static Public Member Functions inherited from vtkMRMLNode | |
static int | IsTypeOf (const char *type) |
static vtkMRMLNode * | SafeDownCast (vtkObject *o) |
Protected Member Functions | |
int | GetGzipCompressionLevelFromCompressionParameter (std::string parameter) |
Convert compression parameter string to gzip compression level. More... | |
virtual void | InitializeSupportedReadFileTypes () VTK_OVERRIDE |
Initialize all the supported write file types. More... | |
virtual void | InitializeSupportedWriteFileTypes () VTK_OVERRIDE |
Initialize all the supported write file types. More... | |
void | operator= (const vtkMRMLNRRDStorageNode &) |
virtual int | ReadDataInternal (vtkMRMLNode *refNode) VTK_OVERRIDE |
Read data and set it in the referenced node. More... | |
vtkMRMLNRRDStorageNode () | |
vtkMRMLNRRDStorageNode (const vtkMRMLNRRDStorageNode &) | |
virtual int | WriteDataInternal (vtkMRMLNode *refNode) VTK_OVERRIDE |
Write data from a referenced node. More... | |
~vtkMRMLNRRDStorageNode () | |
Protected Member Functions inherited from vtkMRMLStorageNode | |
void | operator= (const vtkMRMLStorageNode &) |
void | StageReadData (vtkMRMLNode *refNode) |
void | StageWriteData (vtkMRMLNode *refNode) |
virtual void | UpdateCompressionPresets () |
vtkMRMLStorageNode () | |
vtkMRMLStorageNode (const vtkMRMLStorageNode &) | |
~vtkMRMLStorageNode () | |
Protected Member Functions inherited from vtkMRMLNode | |
virtual const char * | GetMRMLAttributeNameFromReferenceRole (const char *refRole) |
Return the mrml attribute name (if found) associated with a reference role. Return 0 otherwise. More... | |
virtual const char * | GetReferenceRoleFromMRMLAttributeName (const char *attName) |
Return the reference role (if found) associated with the attribute name found in a MRML scene file. Return 0 otherwise. More... | |
virtual char * | GetTempURLString () |
void | GetUpdatedReferencedNodeEventList (int &oldReferencedNodeUseCount, int &newReferencedNodeUseCount, vtkIntArray *oldConsolidatedEventList, vtkIntArray *newConsolidatedEventList, vtkMRMLNode *oldReferencedNode, vtkMRMLNode *newReferencedNode, vtkMRMLNodeReference *referenceToIgnore, vtkIntArray *newEvents) |
virtual void | InvalidateNodeReferences () |
virtual bool | IsReferenceRoleGeneric (const char *refRole) |
Return true if the reference role is generic (ends with '/') or false otherwise. More... | |
virtual void | OnNodeReferenceAdded (vtkMRMLNodeReference *reference) |
virtual void | OnNodeReferenceModified (vtkMRMLNodeReference *reference) |
Called when a referenced node pointer is modified. More... | |
virtual void | OnNodeReferenceRemoved (vtkMRMLNodeReference *reference) |
Called when a referenced node pointer is removed (set to NULL). More... | |
void | operator= (const vtkMRMLNode &) |
void | ParseReferencesAttribute (const char *attValue, std::map< std::string, std::string > &references) |
virtual void | SetTempURLString (const char *) |
Get/Set the string used to manage encoding/decoding of strings/URLs with special characters. More... | |
vtkMRMLNode * | UpdateNodeReferenceEventObserver (vtkMRMLNode *oldReferencedNode, vtkMRMLNode *newReferencedNode, vtkIntArray *newEvents, vtkMRMLNodeReference *referenceToIgnore) |
virtual void | UpdateNodeReferences (const char *referenceRole=NULL) |
virtual void | UpdateNthNodeReference (const char *referenceRole, int n) |
vtkMRMLNode () | |
vtkMRMLNode (const vtkMRMLNode &) | |
virtual | ~vtkMRMLNode () |
critical to have a virtual destructor! More... | |
Protected Attributes | |
int | CenterImage |
Protected Attributes inherited from vtkMRMLStorageNode | |
std::string | CompressionParameter |
std::vector< CompressionPreset > | CompressionPresets |
std::string | DefaultWriteFileExtension |
List of supported extensions to write in. More... | |
char * | FileName |
std::vector< std::string > | FileNameList |
An array of file names, should contain the FileName but may not More... | |
vtkWeakPointer< vtkMRMLStorableNode > | LastFoundStorableNode |
int | ReadState |
vtkTimeStamp * | StoredTime |
vtkStringArray * | SupportedReadFileTypes |
List of supported extensions to read in. More... | |
vtkStringArray * | SupportedWriteFileTypes |
char * | TempFileName |
char * | URI |
vtkURIHandler * | URIHandler |
std::vector< std::string > | URIList |
An array of URI's, should contain the URI but may not More... | |
int | UseCompression |
char * | WriteFileFormat |
int | WriteState |
Protected Attributes inherited from vtkMRMLNode | |
int | AddToScene |
AttributesType | Attributes |
char * | Description |
int | HideFromEditors |
char * | ID |
int | InMRMLCallbackFlag |
Flag to avoid event loops More... | |
vtkCallbackCommand * | MRMLCallbackCommand |
Holders for MRML callbacks. More... | |
vtkObserverManager * | MRMLObserverManager |
char * | Name |
NodeReferenceEventsType | NodeReferenceEvents |
std::map< std::string, std::string > | NodeReferenceMRMLAttributeNames |
NodeReferencesType | NodeReferences |
int | SaveWithScene |
vtkWeakPointer< vtkMRMLScene > | Scene |
int | Selectable |
int | Selected |
Additional Inherited Members | |
Protected Types inherited from vtkMRMLNode | |
typedef std::map< std::string, std::string > | AttributesType |
typedef std::map< std::string, vtkSmartPointer< vtkIntArray > > | NodeReferenceEventsType |
typedef std::vector< vtkSmartPointer< vtkMRMLNodeReference > > | NodeReferenceListType |
typedef std::map< std::string, NodeReferenceListType > | NodeReferencesType |
Static Protected Member Functions inherited from vtkMRMLNode | |
static void | MRMLCallback (vtkObject *caller, unsigned long eid, void *clientData, void *callData) |
MRML node for representing a volume storage.
vtkMRMLNRRDStorageNode nodes describe the archetybe based volume storage node that allows to read/write volume data from/to file using generic ITK mechanism.
Definition at line 26 of file vtkMRMLNRRDStorageNode.h.
Definition at line 30 of file vtkMRMLNRRDStorageNode.h.
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Return true if the node can be read in.
Implements vtkMRMLStorageNode.
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Configure the storage node for data exchange. This is an opportunity to optimize the storage node's settings, for instance to turn off compression.
Reimplemented from vtkMRMLStorageNode.
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Copy the node's attributes to this object
Reimplemented from vtkMRMLStorageNode.
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Create instance of the default node. Like New only virtual.
Implements vtkMRMLStorageNode.
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Center image on read
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Reimplemented from vtkMRMLStorageNode.
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Compression parameter corresponding to minimum compression (fast)
Definition at line 70 of file vtkMRMLNRRDStorageNode.h.
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Compression parameter corresponding to maximum compression (slow)
Definition at line 74 of file vtkMRMLNRRDStorageNode.h.
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Compression parameter corresponding to normal compression.
Definition at line 72 of file vtkMRMLNRRDStorageNode.h.
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Convert compression parameter string to gzip compression level.
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Get node XML tag name (like Storage, Model)
Implements vtkMRMLStorageNode.
Definition at line 49 of file vtkMRMLNRRDStorageNode.h.
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Initialize all the supported write file types.
Reimplemented from vtkMRMLStorageNode.
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Initialize all the supported write file types.
Reimplemented from vtkMRMLStorageNode.
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Reimplemented from vtkMRMLStorageNode.
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int vtkMRMLNRRDStorageNode::ParseDiffusionInformation | ( | vtkTeemNRRDReader * | reader, |
vtkDoubleArray * | grad, | ||
vtkDoubleArray * | bvalues | ||
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Access the nrrd header fields to create a diffusion gradient table
void vtkMRMLNRRDStorageNode::PrintSelf | ( | ostream & | os, |
vtkIndent | indent | ||
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Read data and set it in the referenced node.
Reimplemented from vtkMRMLStorageNode.
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Read node attributes from XML file
Reimplemented from vtkMRMLStorageNode.
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Write data from a referenced node.
Reimplemented from vtkMRMLStorageNode.
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Write this node's information to a MRML file in XML format.
Reimplemented from vtkMRMLStorageNode.
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Definition at line 97 of file vtkMRMLNRRDStorageNode.h.