vtkMRMLDiffusionWeightedVolumeNode Class Reference

MRML node for representing diffusion weighted MRI volume. More...

#include <Libs/MRML/Core/vtkMRMLDiffusionWeightedVolumeNode.h>

Inheritance diagram for vtkMRMLDiffusionWeightedVolumeNode:

Collaboration diagram for vtkMRMLDiffusionWeightedVolumeNode:

Public Types
typedef vtkMRMLScalarVolumeNode	Superclass
Public Types inherited from vtkMRMLScalarVolumeNode
typedef vtkMRMLVolumeNode	Superclass
Public Types inherited from vtkMRMLVolumeNode
enum	{ ImageDataModifiedEvent = 18001 }
	ImageDataModifiedEvent is generated when image data is changed. More...
typedef vtkMRMLDisplayableNode	Superclass
Public Types inherited from vtkMRMLDisplayableNode
enum	{ DisplayModifiedEvent = 17000 }
typedef vtkMRMLTransformableNode	Superclass
Public Types inherited from vtkMRMLTransformableNode
enum	{ TransformModifiedEvent = 15000 }
	TransformModifiedEvent is send when the parent transform is modidied. More...
typedef vtkMRMLStorableNode	Superclass
Public Types inherited from vtkMRMLStorableNode
typedef vtkMRMLNode	Superclass
Public Types inherited from vtkMRMLNode
enum	{   HierarchyModifiedEvent = 16000, IDChangedEvent = 16001, ReferenceAddedEvent, ReferenceModifiedEvent,   ReferenceRemovedEvent, ReferencedNodeModifiedEvent }
typedef vtkObject	Superclass

Public Member Functions
virtual void	Copy (vtkMRMLNode *node) VTK_OVERRIDE
	Copy the node's attributes to this object More...
virtual void	CreateDefaultDisplayNodes () VTK_OVERRIDE
	Create and observe default display node More...
virtual vtkMRMLStorageNode *	CreateDefaultStorageNode () VTK_OVERRIDE
	Create default storage node or NULL if does not have one More...
virtual vtkMRMLNode *	CreateNodeInstance () VTK_OVERRIDE
	MRMLNode methods. More...
double	GetBValue (int val)
	Work around issue that GetBValue is defined as a macro in windows.h. More...
virtual vtkDoubleArray *	GetBValues ()
virtual const char *	GetClassName ()
double *	GetDiffusionGradient (int val)
void	GetDiffusionGradient (int val, double g[3])
virtual vtkDoubleArray *	GetDiffusionGradients ()
virtual vtkMRMLDiffusionWeightedVolumeDisplayNode *	GetDiffusionWeightedVolumeDisplayNode ()
	Associated display MRML node More...
void	GetMeasurementFrameMatrix (double mf[3][3])
void	GetMeasurementFrameMatrix (vtkMatrix4x4 *mat)
virtual const char *	GetNodeTagName () VTK_OVERRIDE
	Get node XML tag name (like Volume, Model) More...
int	GetNumberOfGradients ()
virtual int	IsA (const char *type)
void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE
virtual void	ReadXMLAttributes (const char **atts) VTK_OVERRIDE
	Set node attributes More...
void	SetBValue (int val, const double b)
void	SetBValues (vtkDoubleArray *bValue)
void	SetDiffusionGradient (int val, const double g[3])
void	SetDiffusionGradients (vtkDoubleArray *grad)
void	SetMeasurementFrameMatrix (const double mf[3][3])
void	SetMeasurementFrameMatrix (const double xr, const double xa, const double xs, const double yr, const double ya, const double ys, const double zr, const double za, const double zs)
void	SetMeasurementFrameMatrix (vtkMatrix4x4 *mat)
void	SetNumberOfGradients (int val)
virtual void	WriteXML (ostream &of, int indent) VTK_OVERRIDE
	Write this node's information to a MRML file in XML format. More...
Public Member Functions inherited from vtkMRMLScalarVolumeNode
virtual vtkMRMLScalarVolumeDisplayNode *	GetScalarVolumeDisplayNode ()
	Associated display MRML node More...
virtual vtkCodedEntry *	GetVoxelValueQuantity ()
virtual vtkCodedEntry *	GetVoxelValueUnits ()
void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE
void	SetVoxelValueQuantity (vtkCodedEntry *)
void	SetVoxelValueUnits (vtkCodedEntry *)
Public Member Functions inherited from vtkMRMLVolumeNode
virtual void	ApplyNonLinearTransform (vtkAbstractTransform *transform)
virtual void	ApplyTransform (vtkAbstractTransform *transform) VTK_OVERRIDE
virtual void	ApplyTransformMatrix (vtkMatrix4x4 *transformMatrix) VTK_OVERRIDE
virtual bool	CanApplyNonLinearTransforms () const VTK_OVERRIDE
void	CopyOrientation (vtkMRMLVolumeNode *node)
	Copy the node's attributes to this object More...
virtual void	GetBounds (double bounds[6]) VTK_OVERRIDE
void	GetIJKToRASDirectionMatrix (vtkMatrix4x4 *mat)
void	GetIJKToRASDirections (double dirs[3][3])
void	GetIJKToRASMatrix (vtkMatrix4x4 *mat)
virtual double	GetImageBackgroundScalarComponentAsDouble (int component)
virtual vtkImageData *	GetImageData ()
virtual vtkAlgorithmOutput *	GetImageDataConnection ()
	Return the input image data pipeline. More...
void	GetIToRASDirection (double dirs[3])
void	GetJToRASDirection (double dirs[3])
void	GetKToRASDirection (double dirs[3])
double	GetMaxSpacing ()
	Utility function that returns the max spacing between the 3 orientations More...
const itk::MetaDataDictionary &	GetMetaDataDictionary () const
double	GetMinSpacing ()
	Utility function that returns the min spacing between the 3 orientations More...
virtual bool	GetModifiedSinceRead () VTK_OVERRIDE
virtual double *	GetOrigin ()
virtual void	GetOrigin (double &, double &, double &)
virtual void	GetOrigin (double [3])
virtual void	GetRASBounds (double bounds[6]) VTK_OVERRIDE
void	GetRASToIJKMatrix (vtkMatrix4x4 *mat)
void	GetSliceBounds (double bounds[6], vtkMatrix4x4 *rasToSlice)
virtual void	GetSpacing (double &, double &, double &)
virtual double *	GetSpacing ()
virtual void	GetSpacing (double [3])
virtual vtkMRMLVolumeDisplayNode *	GetVolumeDisplayNode ()
	Associated display MRML node More...
void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE
virtual void	ProcessMRMLEvents (vtkObject *, unsigned long, void *) VTK_OVERRIDE
	alternative method to propagate events generated in Display nodes More...
virtual void	SetAndObserveImageData (vtkImageData *ImageData)
void	SetIJKToRASDirectionMatrix (vtkMatrix4x4 *mat)
void	SetIJKToRASDirections (double dirs[3][3])
void	SetIJKToRASDirections (double ir, double ia, double is, double jr, double ja, double js, double kr, double ka, double ks)
void	SetIJKToRASMatrix (vtkMatrix4x4 *mat)
virtual void	SetImageDataConnection (vtkAlgorithmOutput *inputPort)
void	SetIToRASDirection (double ir, double ia, double is)
void	SetJToRASDirection (double jr, double ja, double js)
void	SetKToRASDirection (double kr, double ka, double ks)
void	SetMetaDataDictionary (const itk::MetaDataDictionary &)
	Set/Get the ITK MetaDataDictionary More...
virtual void	SetOrigin (double arg1, double arg2, double arg3)
virtual void	SetOrigin (double arg[3])
void	SetRASToIJKMatrix (vtkMatrix4x4 *mat)
virtual void	SetSpacing (double arg1, double arg2, double arg3)
virtual void	SetSpacing (double arg[3])
void	ShiftImageDataExtentToZeroStart ()
virtual void	UpdateScene (vtkMRMLScene *scene) VTK_OVERRIDE
	Finds the storage node and read the data More...
Public Member Functions inherited from vtkMRMLDisplayableNode
void	AddAndObserveDisplayNodeID (const char *displayNodeID)
virtual int	GetDisplayClassVisibility (const char *nodeClass)
vtkMRMLDisplayNode *	GetDisplayNode ()
const char *	GetDisplayNodeID ()
virtual const char *	GetDisplayNodeReferenceRole ()
virtual int	GetDisplayVisibility ()
vtkMRMLDisplayNode *	GetNthDisplayNode (int n)
const char *	GetNthDisplayNodeID (int n)
int	GetNumberOfDisplayNodes ()
bool	HasDisplayNodeID (const char *displayNodeID)
	Return true if displayNodeID is in the display node ID list. More...
void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE
void	RemoveAllDisplayNodeIDs ()
	Remove all display node IDs and associated display nodes. More...
void	RemoveNthDisplayNodeID (int n)
void	SetAndObserveDisplayNodeID (const char *displayNodeID)
void	SetAndObserveNthDisplayNodeID (int n, const char *displayNodeID)
virtual void	SetDisplayClassVisibility (const char *nodeClass, int visible)
virtual void	SetDisplayVisibility (int visible)
virtual void	SetSelectable (int) VTK_OVERRIDE
virtual void	WriteCLI (std::vector< std::string > &vtkNotUsed(commandLine), std::string vtkNotUsed(prefix), int vtkNotUsed(coordinateSystemFlag)=0, int vtkNotUsed(multipleFlag)=1)
Public Member Functions inherited from vtkMRMLTransformableNode
vtkMRMLTransformNode *	GetParentTransformNode ()
	Associated transform MRML node More...
const char *	GetTransformNodeID ()
	Get referenced transform node id. More...
bool	HardenTransform ()
void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE
bool	SetAndObserveTransformNodeID (const char *transformNodeID)
virtual void	TransformPointFromWorld (const double inWorld[3], double outLocal[3])
virtual void	TransformPointFromWorld (const vtkVector3d &inWorld, vtkVector3d &outLocal)
virtual void	TransformPointToWorld (const double inLocal[3], double outWorld[3])
virtual void	TransformPointToWorld (const vtkVector3d &inLocal, vtkVector3d &outWorld)
Public Member Functions inherited from vtkMRMLStorableNode
void	AddAndObserveStorageNodeID (const char *storageNodeID)
virtual bool	AddDefaultStorageNode (const char *filename=NULL)
virtual std::string	GetDefaultStorageNodeClassName (const char *filename=NULL)
vtkMRMLStorageNode *	GetNthStorageNode (int n)
	Get associated display MRML node More...
const char *	GetNthStorageNodeID (int n)
int	GetNumberOfStorageNodes ()
const char *	GetSlicerDataType ()
vtkMRMLStorageNode *	GetStorageNode ()
const char *	GetStorageNodeID ()
virtual vtkTagTable *	GetUserTagTable ()
	Methods for user-specified metadata. More...
bool	HasStorageNodeID (const char *storageNodeID)
	Return true if storageNodeID is in the storage node ID list. More...
void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE
void	SetAndObserveNthStorageNodeID (int n, const char *storageNodeID)
void	SetAndObserveStorageNodeID (const char *storageNodeID)
	String ID of the storage MRML node More...
void	SetSlicerDataType (const char *type)
virtual void	StorableModified ()
Public Member Functions inherited from vtkMRMLNode
vtkMRMLNode *	AddAndObserveNodeReferenceID (const char *referenceRole, const char *referencedNodeID, vtkIntArray *events=0)
	Add and observe a reference node from this node for a specific referenceRole. More...
vtkMRMLNode *	AddNodeReferenceID (const char *referenceRole, const char *referencedNodeID)
	Convenience method that adds a referencedNodeID at the end of the list. More...
void	AddNodeReferenceRole (const char *referenceRole, const char *mrmlAttributeName=0, vtkIntArray *events=0)
	Add a referenceRole. More...
virtual void	AddToSceneOff ()
virtual void	AddToSceneOn ()
virtual void	CopyReferences (vtkMRMLNode *node)
	Copy the references of the node into this. More...
void	CopyWithoutModifiedEvent (vtkMRMLNode *node)
void	CopyWithScene (vtkMRMLNode *node)
	Copy everything (including Scene and ID) from another node of the same type. More...
void	CopyWithSceneWithSingleModifiedEvent (vtkMRMLNode *node)
	Copy everything (including Scene and ID) from another node of the same type. More...
void	CopyWithSingleModifiedEvent (vtkMRMLNode *node)
void	DisableModifiedEventOff ()
void	DisableModifiedEventOn ()
virtual int	EndModify (int previousDisableModifiedEventState)
	End modifying the node. More...
virtual int	GetAddToScene ()
	node added to MRML scene. More...
const char *	GetAttribute (const char *name)
	Get value of a name value pair attribute. More...
std::vector< std::string >	GetAttributeNames ()
	Get all attribute names. More...
void	GetAttributeNames (vtkStringArray *attributeNames)
	Get all attribute names. Python-wrappable version. More...
virtual char *	GetDescription ()
virtual int	GetDisableModifiedEvent ()
	Turn on/off generating InvokeEvent for set macros. More...
virtual int	GetHideFromEditors ()
	Describes if the node is hidden. More...
virtual char *	GetID ()
	ID use by other nodes to reference this node in XML. More...
virtual int	GetInMRMLCallbackFlag ()
	Flags to avoid event loops. More...
virtual int	GetModifiedEventPending ()
virtual char *	GetName ()
vtkMRMLNode *	GetNodeReference (const char *referenceRole)
const char *	GetNodeReferenceID (const char *referenceRole)
	Utility function that returns the first node id for a specific referenceRole. More...
void	GetNodeReferenceIDs (const char *referenceRole, std::vector< const char *> &referencedNodeIDs)
	Return a list of the referenced node IDs. More...
void	GetNodeReferenceRoles (std::vector< std::string > &roles)
void	GetNodeReferences (const char *referenceRole, std::vector< vtkMRMLNode *> &nodes)
	Return a list of the referenced nodes. More...
vtkMRMLNode *	GetNthNodeReference (const char *referenceRole, int n)
	Get referenced MRML node for a specific referenceRole. More...
const char *	GetNthNodeReferenceID (const char *referenceRole, int n)
	Return the string of the Nth node ID for a specific reference role. More...
const char *	GetNthNodeReferenceRole (int n)
int	GetNumberOfNodeReferenceRoles ()
int	GetNumberOfNodeReferences (const char *referenceRole)
	Return the number of node IDs for a specific reference role (and nodes as they always have the same size). More...
virtual int	GetSaveWithScene ()
	Save node with MRML scene. More...
virtual vtkMRMLScene *	GetScene ()
	Only the scene can set itself to the node. More...
virtual int	GetSelectable ()
	Describes if the node is selectable. More...
virtual int	GetSelected ()
	Get/Set for Selected. More...
virtual char *	GetSingletonTag ()
bool	HasNodeReferenceID (const char *referenceRole, const char *referencedNodeID)
	Return true if referencedNodeID is in the node ID list for a specific referenceRole. More...
virtual void	HideFromEditorsOff ()
virtual void	HideFromEditorsOn ()
virtual void	InvokeCustomModifiedEvent (int eventId, void *callData=NULL)
	This method allows the node to compress events. More...
virtual int	InvokePendingModifiedEvent ()
	Invokes any modified events that are pending. More...
bool	IsSingleton ()
virtual void	Modified () VTK_OVERRIDE
	Customized version of Modified() allowing to compress vtkCommand::ModifiedEvent. More...
virtual void	OnNodeAddedToScene ()
void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE
virtual void	ProcessChildNode (vtkMRMLNode *)
	Set dependencies between this node and a child node when parsing XML file. More...
void	RemoveAttribute (const char *name)
	Remove attribute with the specified name. More...
void	RemoveNodeReferenceIDs (const char *referenceRole)
	Remove all node IDs and associated nodes for a specific referenceRole. More...
void	RemoveNthNodeReferenceID (const char *referenceRole, int n)
	Convenience method that removes the Nth node ID from the list. More...
virtual void	Reset (vtkMRMLNode *defaultNode)
	Reset node attributes to the initial state as defined in the constructor or the passed default node. More...
virtual void	SaveWithSceneOff ()
virtual void	SaveWithSceneOn ()
virtual void	SelectableOff ()
virtual void	SelectableOn ()
virtual void	SelectedOff ()
virtual void	SelectedOn ()
virtual void	SetAddToScene (int)
void	SetAddToSceneNoModify (int value)
vtkMRMLNode *	SetAndObserveNodeReferenceID (const char *referenceRole, const char *referencedNodeID, vtkIntArray *events=0)
	Set and observe a reference node from this node for a specific referenceRole. More...
vtkMRMLNode *	SetAndObserveNthNodeReferenceID (const char *referenceRole, int n, const char *referencedNodeID, vtkIntArray *events=0)
	Set and observe the Nth node ID for a specific reference role. More...
void	SetAttribute (const char *name, const char *value)
	Set a name value pair attribute. More...
virtual void	SetDescription (const char *)
	Text description of this node, to be set by the user. More...
void	SetDisableModifiedEvent (int onOff)
virtual void	SetHideFromEditors (int)
void	SetInMRMLCallbackFlag (int flag)
virtual void	SetName (const char *)
	Name of this node, to be set by the user. More...
vtkMRMLNode *	SetNodeReferenceID (const char *referenceRole, const char *referencedNodeID)
	Set a reference to a node with specified nodeID from this node for a specific referenceRole. More...
vtkMRMLNode *	SetNthNodeReferenceID (const char *referenceRole, int n, const char *referencedNodeID)
	Set a N-th reference from this node with specified referencedNodeID for a specific referenceRole. More...
virtual void	SetSaveWithScene (int)
virtual void	SetScene (vtkMRMLScene *scene)
virtual void	SetSceneReferences ()
	Update the references of the node to the scene. More...
virtual void	SetSelected (int)
void	SetSingletonOff ()
void	SetSingletonOn ()
virtual void	SetSingletonTag (const char *)
	Tag that make this node a singleton in the scene. More...
virtual int	StartModify ()
	Start modifying the node. Disable Modify events. More...
virtual void	UpdateReferenceID (const char *oldID, const char *newID)
	Update the stored reference to another node in the scene. More...
virtual void	UpdateReferences ()
	The method should remove all pointers and observations to all nodes that are not in the scene anymore. More...
const char *	URLDecodeString (const char *inString)
	Decode a URL string. More...
const char *	URLEncodeString (const char *inString)
	Encode a URL string. More...
virtual void	WriteNodeBodyXML (ostream &of, int indent)
	Write this node's body to a MRML file in XML format. More...
std::string	XMLAttributeDecodeString (const std::string &inString)
	Decode an XML attribute string. More...
std::string	XMLAttributeEncodeString (const std::string &inString)
	Encode an XML attribute string (replaces special characters by code sequences) More...

Static Public Member Functions
static int	IsTypeOf (const char *type)
static vtkMRMLDiffusionWeightedVolumeNode *	New ()
static vtkMRMLDiffusionWeightedVolumeNode *	SafeDownCast (vtkObject *o)
Static Public Member Functions inherited from vtkMRMLScalarVolumeNode
static void	CreateNoneNode (vtkMRMLScene *scene)
	Make a 'None' volume node with blank image data More...
static int	IsTypeOf (const char *type)
static vtkMRMLScalarVolumeNode *	New ()
static vtkMRMLScalarVolumeNode *	SafeDownCast (vtkObject *o)
Static Public Member Functions inherited from vtkMRMLVolumeNode
static bool	ComputeIJKToRASFromScanOrder (const char *order, const double *spacing, const int *dims, bool centerImage, vtkMatrix4x4 *IJKToRAS)
	RAS->IJK Matrix Calculation. More...
static const char *	ComputeScanOrderFromIJKToRAS (vtkMatrix4x4 *IJKToRAS)
static int	IsTypeOf (const char *type)
static vtkMRMLVolumeNode *	SafeDownCast (vtkObject *o)
Static Public Member Functions inherited from vtkMRMLDisplayableNode
static int	IsTypeOf (const char *type)
static vtkMRMLDisplayableNode *	SafeDownCast (vtkObject *o)
Static Public Member Functions inherited from vtkMRMLTransformableNode
static int	IsTypeOf (const char *type)
static vtkMRMLTransformableNode *	SafeDownCast (vtkObject *o)
Static Public Member Functions inherited from vtkMRMLStorableNode
static int	IsTypeOf (const char *type)
static vtkMRMLStorableNode *	SafeDownCast (vtkObject *o)
Static Public Member Functions inherited from vtkMRMLNode
static int	IsTypeOf (const char *type)
static vtkMRMLNode *	SafeDownCast (vtkObject *o)

Protected Member Functions
void	operator= (const vtkMRMLDiffusionWeightedVolumeNode &)
void	SetNumberOfGradientsInternal (int val)
	vtkMRMLDiffusionWeightedVolumeNode ()
	vtkMRMLDiffusionWeightedVolumeNode (const vtkMRMLDiffusionWeightedVolumeNode &)
	~vtkMRMLDiffusionWeightedVolumeNode ()
Protected Member Functions inherited from vtkMRMLScalarVolumeNode
void	operator= (const vtkMRMLScalarVolumeNode &)
	vtkMRMLScalarVolumeNode ()
	vtkMRMLScalarVolumeNode (const vtkMRMLScalarVolumeNode &)
	~vtkMRMLScalarVolumeNode ()
Protected Member Functions inherited from vtkMRMLVolumeNode
virtual void	GetBoundsInternal (double bounds[6], vtkMatrix4x4 *rasToSlice, bool useTransform)
virtual void	OnNodeReferenceAdded (vtkMRMLNodeReference *reference) VTK_OVERRIDE
	Called when a node reference ID is added (list size increased). More...
virtual void	OnNodeReferenceModified (vtkMRMLNodeReference *reference) VTK_OVERRIDE
	Called when a node reference ID is modified. More...
void	operator= (const vtkMRMLVolumeNode &)
void	SetImageDataToDisplayNode (vtkMRMLVolumeDisplayNode *displayNode)
void	SetImageDataToDisplayNodes ()
	Set the image data pipeline to all the display nodes. More...
virtual void	UpdateDisplayNodeImageData (vtkMRMLDisplayNode *dnode)
	vtkMRMLVolumeNode ()
	vtkMRMLVolumeNode (const vtkMRMLVolumeNode &)
	~vtkMRMLVolumeNode ()
Protected Member Functions inherited from vtkMRMLDisplayableNode
virtual const char *	GetDisplayNodeReferenceMRMLAttributeName ()
virtual void	OnNodeReferenceRemoved (vtkMRMLNodeReference *reference) VTK_OVERRIDE
	Called after a node reference ID is removed (list size decreased). More...
void	operator= (const vtkMRMLDisplayableNode &)
	vtkMRMLDisplayableNode ()
	vtkMRMLDisplayableNode (const vtkMRMLDisplayableNode &)
	~vtkMRMLDisplayableNode ()
Protected Member Functions inherited from vtkMRMLTransformableNode
virtual const char *	GetTransformNodeReferenceMRMLAttributeName ()
virtual const char *	GetTransformNodeReferenceRole ()
void	operator= (const vtkMRMLTransformableNode &)
	vtkMRMLTransformableNode ()
	vtkMRMLTransformableNode (const vtkMRMLTransformableNode &)
	~vtkMRMLTransformableNode ()
Protected Member Functions inherited from vtkMRMLStorableNode
virtual const char *	GetStorageNodeReferenceMRMLAttributeName ()
virtual const char *	GetStorageNodeReferenceRole ()
virtual vtkTimeStamp	GetStoredTime ()
void	operator= (const vtkMRMLStorableNode &)
	vtkMRMLStorableNode ()
	vtkMRMLStorableNode (const vtkMRMLStorableNode &)
	~vtkMRMLStorableNode ()
Protected Member Functions inherited from vtkMRMLNode
virtual const char *	GetMRMLAttributeNameFromReferenceRole (const char *refRole)
	Return the mrml attribute name (if found) associated with a reference role. Return 0 otherwise. More...
virtual const char *	GetReferenceRoleFromMRMLAttributeName (const char *attName)
	Return the reference role (if found) associated with the attribute name found in a MRML scene file. Return 0 otherwise. More...
virtual char *	GetTempURLString ()
void	GetUpdatedReferencedNodeEventList (int &oldReferencedNodeUseCount, int &newReferencedNodeUseCount, vtkIntArray *oldConsolidatedEventList, vtkIntArray *newConsolidatedEventList, vtkMRMLNode *oldReferencedNode, vtkMRMLNode *newReferencedNode, vtkMRMLNodeReference *referenceToIgnore, vtkIntArray *newEvents)
virtual void	InvalidateNodeReferences ()
virtual bool	IsReferenceRoleGeneric (const char *refRole)
	Return true if the reference role is generic (ends with '/') or false otherwise. More...
void	operator= (const vtkMRMLNode &)
void	ParseReferencesAttribute (const char *attValue, std::map< std::string, std::string > &references)
virtual void	SetTempURLString (const char *)
	Get/Set the string used to manage encoding/decoding of strings/URLs with special characters. More...
vtkMRMLNode *	UpdateNodeReferenceEventObserver (vtkMRMLNode *oldReferencedNode, vtkMRMLNode *newReferencedNode, vtkIntArray *newEvents, vtkMRMLNodeReference *referenceToIgnore)
virtual void	UpdateNodeReferences (const char *referenceRole=NULL)
virtual void	UpdateNthNodeReference (const char *referenceRole, int n)
	vtkMRMLNode ()
	vtkMRMLNode (const vtkMRMLNode &)
virtual	~vtkMRMLNode ()
	critical to have a virtual destructor! More...

Protected Attributes
vtkDoubleArray *	BValues
vtkDoubleArray *	DiffusionGradients
double	MeasurementFrameMatrix [3][3]
Protected Attributes inherited from vtkMRMLScalarVolumeNode
vtkCodedEntry *	VoxelValueQuantity
vtkCodedEntry *	VoxelValueUnits
Protected Attributes inherited from vtkMRMLVolumeNode
vtkEventForwarderCommand *	DataEventForwarder
itk::MetaDataDictionary	Dictionary
double	IJKToRASDirections [3][3]
	these are unit length direction cosines More...
vtkAlgorithmOutput *	ImageDataConnection
double	Origin [3]
double	Spacing [3]
	these are mappings to mm space More...
Protected Attributes inherited from vtkMRMLStorableNode
std::string	SlicerDataType
vtkTimeStamp	StorableModifiedTime
vtkTagTable *	UserTagTable
Protected Attributes inherited from vtkMRMLNode
int	AddToScene
AttributesType	Attributes
char *	Description
int	HideFromEditors
char *	ID
int	InMRMLCallbackFlag
	Flag to avoid event loops More...
vtkCallbackCommand *	MRMLCallbackCommand
	Holders for MRML callbacks. More...
vtkObserverManager *	MRMLObserverManager
char *	Name
NodeReferenceEventsType	NodeReferenceEvents
std::map< std::string, std::string >	NodeReferenceMRMLAttributeNames
NodeReferencesType	NodeReferences
int	SaveWithScene
vtkWeakPointer< vtkMRMLScene >	Scene
int	Selectable
int	Selected

Additional Inherited Members
Protected Types inherited from vtkMRMLNode
typedef std::map< std::string, std::string >	AttributesType
typedef std::map< std::string, vtkSmartPointer< vtkIntArray > >	NodeReferenceEventsType
typedef std::vector< vtkSmartPointer< vtkMRMLNodeReference > >	NodeReferenceListType
typedef std::map< std::string, NodeReferenceListType >	NodeReferencesType
Static Protected Member Functions inherited from vtkMRMLNode
static void	MRMLCallback (vtkObject *caller, unsigned long eid, void *clientData, void *callData)
Static Protected Attributes inherited from vtkMRMLDisplayableNode
static const char *	DisplayNodeReferenceMRMLAttributeName
static const char *	DisplayNodeReferenceRole
Static Protected Attributes inherited from vtkMRMLTransformableNode
static const char *	TransformNodeReferenceMRMLAttributeName
static const char *	TransformNodeReferenceRole
Static Protected Attributes inherited from vtkMRMLStorableNode
static const char *	StorageNodeReferenceMRMLAttributeName
static const char *	StorageNodeReferenceRole

Detailed Description

MRML node for representing diffusion weighted MRI volume.

Diffusion Weigthed Volume nodes describe data sets that encode diffusion weigthed images. These images are the basis for computing the diffusion tensor. The node is a container for the necessary information to interpert DW images:

1. Gradient information.
2. B value for each gradient.
3. Measurement frame that relates the coordinate system where the gradients are given to RAS.

Definition at line 34 of file vtkMRMLDiffusionWeightedVolumeNode.h.

Member Typedef Documentation

Superclass

typedef vtkMRMLScalarVolumeNode vtkMRMLDiffusionWeightedVolumeNode::Superclass

Definition at line 38 of file vtkMRMLDiffusionWeightedVolumeNode.h.

Constructor & Destructor Documentation

vtkMRMLDiffusionWeightedVolumeNode() [1/2]

vtkMRMLDiffusionWeightedVolumeNode::vtkMRMLDiffusionWeightedVolumeNode ( )

protected

~vtkMRMLDiffusionWeightedVolumeNode()

vtkMRMLDiffusionWeightedVolumeNode::~vtkMRMLDiffusionWeightedVolumeNode ( )

protected

vtkMRMLDiffusionWeightedVolumeNode() [2/2]

vtkMRMLDiffusionWeightedVolumeNode::vtkMRMLDiffusionWeightedVolumeNode ( const vtkMRMLDiffusionWeightedVolumeNode &  )

protected

Member Function Documentation

Copy()

virtual void vtkMRMLDiffusionWeightedVolumeNode::Copy ( vtkMRMLNode *  node )

virtual

Copy the node's attributes to this object

Reimplemented from vtkMRMLScalarVolumeNode.

CreateDefaultDisplayNodes()

virtual void vtkMRMLDiffusionWeightedVolumeNode::CreateDefaultDisplayNodes ( )

virtual

Create and observe default display node

Reimplemented from vtkMRMLScalarVolumeNode.

CreateDefaultStorageNode()

virtual vtkMRMLStorageNode* vtkMRMLDiffusionWeightedVolumeNode::CreateDefaultStorageNode ( )

virtual

Create default storage node or NULL if does not have one

Reimplemented from vtkMRMLScalarVolumeNode.

CreateNodeInstance()

virtual vtkMRMLNode* vtkMRMLDiffusionWeightedVolumeNode::CreateNodeInstance ( )

virtual

MRMLNode methods.

Reimplemented from vtkMRMLScalarVolumeNode.

GetBValue()

double vtkMRMLDiffusionWeightedVolumeNode::GetBValue

(

int

val

)

Work around issue that GetBValue is defined as a macro in windows.h.

GetBValues()

virtual vtkDoubleArray* vtkMRMLDiffusionWeightedVolumeNode::GetBValues ( )

virtual

GetClassName()

virtual const char* vtkMRMLDiffusionWeightedVolumeNode::GetClassName ( )

virtual

Reimplemented from vtkMRMLScalarVolumeNode.

GetDiffusionGradient() [1/2]

double* vtkMRMLDiffusionWeightedVolumeNode::GetDiffusionGradient

(

int

val

)

GetDiffusionGradient() [2/2]

void vtkMRMLDiffusionWeightedVolumeNode::GetDiffusionGradient	(	int	val,
		double	g[3]
	)

GetDiffusionGradients()

virtual vtkDoubleArray* vtkMRMLDiffusionWeightedVolumeNode::GetDiffusionGradients ( )

virtual

GetDiffusionWeightedVolumeDisplayNode()

virtual vtkMRMLDiffusionWeightedVolumeDisplayNode* vtkMRMLDiffusionWeightedVolumeNode::GetDiffusionWeightedVolumeDisplayNode ( )

virtual

Associated display MRML node

GetMeasurementFrameMatrix() [1/2]

void vtkMRMLDiffusionWeightedVolumeNode::GetMeasurementFrameMatrix

(

double

mf[3][3]

)

GetMeasurementFrameMatrix() [2/2]

void vtkMRMLDiffusionWeightedVolumeNode::GetMeasurementFrameMatrix

(

vtkMatrix4x4 *

mat

)

GetNodeTagName()

virtual const char* vtkMRMLDiffusionWeightedVolumeNode::GetNodeTagName ( )

inlinevirtual

Get node XML tag name (like Volume, Model)

Reimplemented from vtkMRMLScalarVolumeNode.

Definition at line 57 of file vtkMRMLDiffusionWeightedVolumeNode.h.

GetNumberOfGradients()

int vtkMRMLDiffusionWeightedVolumeNode::GetNumberOfGradients

(

)

IsA()

virtual int vtkMRMLDiffusionWeightedVolumeNode::IsA ( const char *  type )

virtual

Reimplemented from vtkMRMLScalarVolumeNode.

IsTypeOf()

static int vtkMRMLDiffusionWeightedVolumeNode::IsTypeOf ( const char *  type )

static

New()

static vtkMRMLDiffusionWeightedVolumeNode* vtkMRMLDiffusionWeightedVolumeNode::New ( )

static

operator=()

void vtkMRMLDiffusionWeightedVolumeNode::operator= ( const vtkMRMLDiffusionWeightedVolumeNode &  )

protected

PrintSelf()

void vtkMRMLDiffusionWeightedVolumeNode::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

ReadXMLAttributes()

virtual void vtkMRMLDiffusionWeightedVolumeNode::ReadXMLAttributes ( const char **  atts )

virtual

Set node attributes

Reimplemented from vtkMRMLScalarVolumeNode.

SafeDownCast()

static vtkMRMLDiffusionWeightedVolumeNode* vtkMRMLDiffusionWeightedVolumeNode::SafeDownCast ( vtkObject *  o )

static

SetBValue()

void vtkMRMLDiffusionWeightedVolumeNode::SetBValue	(	int	val,
		const double	b
	)

SetBValues()

void vtkMRMLDiffusionWeightedVolumeNode::SetBValues

(

vtkDoubleArray *

bValue

)

SetDiffusionGradient()

void vtkMRMLDiffusionWeightedVolumeNode::SetDiffusionGradient	(	int	val,
		const double	g[3]
	)

SetDiffusionGradients()

void vtkMRMLDiffusionWeightedVolumeNode::SetDiffusionGradients

(

vtkDoubleArray *

grad

)

SetMeasurementFrameMatrix() [1/3]

void vtkMRMLDiffusionWeightedVolumeNode::SetMeasurementFrameMatrix

(

const double

mf[3][3]

)

Set/Get measurement frame that relates the coordinate system where the tensor measurements are given with the RAS coordinate system

SetMeasurementFrameMatrix() [2/3]

void vtkMRMLDiffusionWeightedVolumeNode::SetMeasurementFrameMatrix	(	const double	xr,
		const double	xa,
		const double	xs,
		const double	yr,
		const double	ya,
		const double	ys,
		const double	zr,
		const double	za,
		const double	zs
	)

SetMeasurementFrameMatrix() [3/3]

void vtkMRMLDiffusionWeightedVolumeNode::SetMeasurementFrameMatrix

(

vtkMatrix4x4 *

mat

)

SetNumberOfGradients()

void vtkMRMLDiffusionWeightedVolumeNode::SetNumberOfGradients

(

int

val

)

SetNumberOfGradientsInternal()

void vtkMRMLDiffusionWeightedVolumeNode::SetNumberOfGradientsInternal ( int  val )

protected

WriteXML()

virtual void vtkMRMLDiffusionWeightedVolumeNode::WriteXML ( ostream &  of, int  indent  )

virtual

Write this node's information to a MRML file in XML format.

Reimplemented from vtkMRMLScalarVolumeNode.

Member Data Documentation

BValues

vtkDoubleArray* vtkMRMLDiffusionWeightedVolumeNode::BValues

protected

Definition at line 114 of file vtkMRMLDiffusionWeightedVolumeNode.h.

DiffusionGradients

vtkDoubleArray* vtkMRMLDiffusionWeightedVolumeNode::DiffusionGradients

protected

Definition at line 113 of file vtkMRMLDiffusionWeightedVolumeNode.h.

MeasurementFrameMatrix

double vtkMRMLDiffusionWeightedVolumeNode::MeasurementFrameMatrix[3][3]

protected

Definition at line 111 of file vtkMRMLDiffusionWeightedVolumeNode.h.

---

The documentation for this class was generated from the following file:

• Libs/MRML/Core/vtkMRMLDiffusionWeightedVolumeNode.h