MRML node for representing a volume (image stack). More...

#include <Libs/MRML/Core/vtkMRMLDiffusionTensorVolumeDisplayNode.h>

Inheritance diagram for vtkMRMLDiffusionTensorVolumeDisplayNode:

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Collaboration diagram for vtkMRMLDiffusionTensorVolumeDisplayNode:

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Public Types
typedef vtkMRMLGlyphableVolumeDisplayNode	Superclass

Public Types inherited from vtkMRMLGlyphableVolumeDisplayNode
enum	{ visModeScalar = 0, visModeGlyph = 1, visModeBoth = 2 }
	Display Information. More...

typedef vtkMRMLScalarVolumeDisplayNode	Superclass

Public Types inherited from vtkMRMLScalarVolumeDisplayNode
typedef vtkMRMLVolumeDisplayNode	Superclass

Public Types inherited from vtkMRMLVolumeDisplayNode
typedef vtkMRMLDisplayNode	Superclass

Public Types inherited from vtkMRMLDisplayNode
enum	InterpolationType { FlatInterpolation = 0, GouraudInterpolation, PhongInterpolation }

enum	RepresentationType { PointsRepresentation = 0, WireframeRepresentation, SurfaceRepresentation }

enum	ScalarRangeFlagType { UseManualScalarRange = 0, UseDataScalarRange, UseColorNodeScalarRange, UseDataTypeScalarRange, UseDirectMapping, NUM_SCALAR_RANGE_FLAGS }

typedef vtkMRMLNode	Superclass

Public Types inherited from vtkMRMLNode
enum	{ HierarchyModifiedEvent = 16000, IDChangedEvent = 16001, ReferenceAddedEvent, ReferenceModifiedEvent, ReferenceRemovedEvent, ReferencedNodeModifiedEvent }

typedef vtkObject	Superclass

Public Member Functions
virtual void	AddSliceGlyphDisplayNodes (vtkMRMLVolumeNode *node) VTK_OVERRIDE
	add slice glyph display nodes if not already present and return it More...

virtual void	Copy (vtkMRMLNode *node) VTK_OVERRIDE
	Copy the node's attributes to this object More...

virtual vtkMRMLNode *	CreateNodeInstance () VTK_OVERRIDE
	Create instance of the default node. Like New only virtual. More...

virtual vtkAlgorithmOutput *	GetBackgroundImageStencilDataConnection () VTK_OVERRIDE

virtual const char *	GetClassName ()

virtual void	GetDisplayScalarRange (double range[2]) VTK_OVERRIDE

virtual vtkDiffusionTensorMathematics *	GetDTIMathematics ()

virtual vtkDiffusionTensorMathematics *	GetDTIMathematicsAlpha ()

virtual vtkAlgorithmOutput *	GetInputImageDataConnection () VTK_OVERRIDE
	Get the input of the pipeline. More...

virtual const char *	GetNodeTagName () VTK_OVERRIDE
	Get node XML tag name (like Volume, Model) More...

virtual int	GetScalarInvariant ()
	Display Information. More...

virtual const char *	GetScalarInvariantAsString ()
	Return a text string describing the ScalarInvariant variable More...

virtual vtkImageShiftScale *	GetShiftScale ()

virtual std::vector< vtkMRMLGlyphableVolumeSliceDisplayNode * >	GetSliceGlyphDisplayNodes (vtkMRMLVolumeNode *node) VTK_OVERRIDE
	get associated slice glyph display node or NULL if not set More...

virtual int	IsA (const char *type)

void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE

virtual void	ProcessMRMLEvents (vtkObject , unsigned long, void ) VTK_OVERRIDE
	alternative method to propagate events generated in Display nodes More...

virtual void	ReadXMLAttributes (const char **atts) VTK_OVERRIDE
	Set node attributes More...

virtual void	SetScalarInvariant (int)

void	SetScalarInvariantToFractionalAnisotropy ()
	Set scalar invariant to FA (normalized variance of eigenvalues) More...

void	SetScalarInvariantToLinearMeasure ()
	Set scalar invariant to C_L (Westin's linear measure) More...

void	SetScalarInvariantToPlanarMeasure ()
	Set scalar invariant to C_P (Westin's planar measure) More...

void	SetScalarInvariantToRelativeAnisotropy ()
	Set scalar invariant to relative anisotropy. More...

void	SetScalarInvariantToSphericalMeasure ()
	Set scalar invariant to C_S (Westin's spherical measure) More...

void	SetScalarInvariantToTrace ()
	Set scalar invariant to trace (sum of eigenvalues). More...

virtual void	UpdateImageDataPipeline () VTK_OVERRIDE
	Update the pipeline based on this node attributes More...

virtual void	UpdateReferenceID (const char oldID, const char newID) VTK_OVERRIDE
	Update the stored reference to another node in the scene More...

virtual void	UpdateReferences () VTK_OVERRIDE

virtual void	UpdateScene (vtkMRMLScene *scene) VTK_OVERRIDE
	Finds the storage node and read the data More...

virtual void	WriteXML (ostream &of, int indent) VTK_OVERRIDE
	Write this node's information to a MRML file in XML format. More...

Public Member Functions inherited from vtkMRMLGlyphableVolumeDisplayNode
virtual void	AddSliceGlyphDisplayNodes (vtkMRMLVolumeNode *vtkNotUsed(node))
	add slice glyph display nodes if not already present and return it More...

vtkMRMLColorNode *	GetGlyphColorNode ()
	Get associated color MRML node More...

virtual char *	GetGlyphColorNodeID ()

virtual std::vector< vtkMRMLGlyphableVolumeSliceDisplayNode * >	GetSliceGlyphDisplayNodes (vtkMRMLVolumeNode *vtkNotUsed(node))
	get associated slice glyph display node or NULL if not set More...

virtual int	GetVisualizationMode ()

void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE

void	SetAndObserveGlyphColorNodeID (const char *GlyphColorNodeID)
	String ID of the color MRML node More...

void	SetAndObserveGlyphColorNodeID (std::string GlyphColorNodeID)

void	SetDefaultColorMap () VTK_OVERRIDE
	set gray colormap More...

virtual void	SetSceneReferences () VTK_OVERRIDE
	Set Glyph color node ID as reference to the scene. More...

virtual void	SetVisualizationMode (int)

void	SetVisualizationModeToBoth ()

void	SetVisualizationModeToGlyphs ()

void	SetVisualizationModeToScalarVolume ()

Public Member Functions inherited from vtkMRMLScalarVolumeDisplayNode
void	AddWindowLevelPreset (double window, double level)
	Add a window level preset More...

void	AddWindowLevelPresetFromString (const char *preset)
	Parse a string with window and level as double\|double, and add a preset More...

virtual void	ApplyThresholdOff ()

virtual void	ApplyThresholdOn ()
	Specifies whether to apply the threshold More...

virtual void	AutoThresholdOff ()

virtual void	AutoThresholdOn ()
	Specifies whether the threshold should be set automatically More...

virtual void	AutoWindowLevelOff ()

virtual void	AutoWindowLevelOn ()
	Specifies whether windowing and leveling are to be performed automatically More...

virtual int	GetApplyThreshold ()

virtual int	GetAutoThreshold ()

virtual int	GetAutoWindowLevel ()

virtual int	GetInterpolate ()
	Set/Get interpolate reformated slices More...

double	GetLevel ()
	The level value to use when autoWindowLevel is 'no' More...

double	GetLevelPreset (int p)

virtual double	GetLowerThreshold ()

int	GetNumberOfWindowLevelPresets ()
	Get the number of window/level presets More...

virtual vtkAlgorithmOutput *	GetOutputImageDataConnection () VTK_OVERRIDE
	Gets the pipeline output. More...

virtual double	GetUpperThreshold ()

double	GetWindow ()
	The window value to use when autoWindowLevel is 'no' More...

virtual bool	GetWindowLevelLocked ()
	Display Information. More...

double	GetWindowLevelMax ()
	Utility function that returns the maximum value of the window level. More...

double	GetWindowLevelMin ()
	Utility function that returns the minimum value of the window level. More...

double	GetWindowPreset (int p)
	Return a specific preset, returns 0 if p out of range More...

virtual void	InterpolateOff ()

virtual void	InterpolateOn ()

void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE

void	ResetWindowLevelPresets ()
	Remove all presets More...

virtual void	SetApplyThreshold (int)

virtual void	SetAutoThreshold (int)

virtual void	SetAutoWindowLevel (int)

virtual void	SetBackgroundImageStencilDataConnection (vtkAlgorithmOutput *imageDataConnection) VTK_OVERRIDE
	Get/set background mask stencil More...

virtual void	SetInputImageDataConnection (vtkAlgorithmOutput *imageDataConnection) VTK_OVERRIDE
	Set the pipeline input. More...

virtual void	SetInterpolate (int)

virtual void	SetLevel (double)

virtual void	SetLowerThreshold (double lower)

virtual void	SetThreshold (double lower, double upper)

virtual void	SetUpperThreshold (double upper)

virtual void	SetWindow (double)

virtual void	SetWindowLevel (double window, double level)

void	SetWindowLevelFromPreset (int p)
	Set Window and Level from preset p More...

virtual void	SetWindowLevelLocked (bool)

void	SetWindowLevelMinMax (double min, double max)

Public Member Functions inherited from vtkMRMLVolumeDisplayNode
virtual vtkImageStencilData *	GetBackgroundImageStencilData ()

virtual vtkAlgorithmOutput *	GetImageDataConnection ()

virtual vtkImageData *	GetInputImageData ()
	Gets the pipeline input. To be reimplemented in subclasses. More...

virtual vtkImageData *	GetOutputImageData ()
	Gets the pipeline output. To be reimplemented in subclasses. More...

vtkMRMLVolumeNode *	GetVolumeNode ()

void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE

Public Member Functions inherited from vtkMRMLDisplayNode
void	AddViewNodeID (const char *viewNodeID)

void	AutoScalarRangeOff ()

void	AutoScalarRangeOn ()

virtual void	BackfaceCullingOff ()

virtual void	BackfaceCullingOn ()

virtual void	ClippingOff ()

virtual void	ClippingOn ()

virtual void	EdgeVisibilityOff ()

virtual void	EdgeVisibilityOn ()

virtual void	FrontfaceCullingOff ()

virtual void	FrontfaceCullingOn ()

virtual int	GetActiveAttributeLocation ()

virtual char *	GetActiveScalarName ()

virtual double	GetAmbient ()

int	GetAutoScalarRange ()

virtual int	GetBackfaceCulling ()

virtual int	GetClipping ()

virtual void	GetColor (double [3])

virtual void	GetColor (double &, double &, double &)

virtual double *	GetColor ()

virtual vtkMRMLColorNode *	GetColorNode ()

virtual char *	GetColorNodeID ()

virtual double	GetDiffuse ()

virtual vtkMRMLDisplayableNode *	GetDisplayableNode ()

virtual double *	GetEdgeColor ()

virtual void	GetEdgeColor (double &, double &, double &)

virtual void	GetEdgeColor (double [3])

virtual int	GetEdgeVisibility ()

virtual int	GetFrontfaceCulling ()

virtual int	GetInterpolateTexture ()

virtual int	GetInterpolation ()

virtual int	GetLighting ()

virtual double	GetLineWidth ()

const char *	GetNthViewNodeID (unsigned int index)

int	GetNumberOfViewNodeIDs () const

virtual double	GetOpacity ()

virtual double	GetPointSize ()

virtual double	GetPower ()

virtual int	GetRepresentation ()

virtual double *	GetScalarRange ()

virtual void	GetScalarRange (double [2])

virtual void	GetScalarRange (double &, double &)

virtual int	GetScalarRangeFlag ()

virtual int	GetScalarVisibility ()

virtual double	GetSelectedAmbient ()

virtual double *	GetSelectedColor ()

virtual void	GetSelectedColor (double &, double &, double &)

virtual void	GetSelectedColor (double [3])

virtual double	GetSelectedSpecular ()

virtual int	GetShading ()

virtual double	GetSliceIntersectionOpacity ()

virtual int	GetSliceIntersectionThickness ()

virtual int	GetSliceIntersectionVisibility ()

virtual double	GetSpecular ()

virtual int	GetTensorVisibility ()

virtual vtkAlgorithmOutput *	GetTextureImageDataConnection ()

virtual int	GetVectorVisibility ()

std::vector< std::string >	GetViewNodeIDs () const

virtual int	GetVisibility ()

virtual bool	GetVisibility (const char *viewNodeID)

virtual void	InterpolateTextureOff ()

virtual void	InterpolateTextureOn ()

bool	IsDisplayableInView (const char *viewNodeID) const

bool	IsViewNodeIDPresent (const char *viewNodeID) const

virtual void	LightingOff ()

virtual void	LightingOn ()

void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE

void	RemoveAllViewNodeIDs ()

void	RemoveViewNodeID (char *viewNodeID)

virtual void	ScalarVisibilityOff ()

virtual void	ScalarVisibilityOn ()

virtual void	SetActiveAttributeLocation (int)

virtual void	SetActiveScalarName (const char *)

virtual void	SetAmbient (double)

virtual void	SetAndObserveColorNodeID (const char *ColorNodeID)

void	SetAndObserveColorNodeID (const std::string &ColorNodeID)

void	SetAutoScalarRange (int b)

virtual void	SetBackfaceCulling (int)

virtual void	SetClipping (int)

virtual void	SetColor (double [3])

virtual void	SetColor (double, double, double)

virtual void	SetDiffuse (double)

void	SetDisplayableOnlyInView (const char *viewNodeID)

virtual void	SetEdgeColor (double, double, double)

virtual void	SetEdgeColor (double [3])

virtual void	SetEdgeVisibility (int)

virtual void	SetFrontfaceCulling (int)

virtual void	SetInterpolateTexture (int)

virtual void	SetInterpolation (int)

virtual void	SetLighting (int)

virtual void	SetLineWidth (double)

virtual void	SetOpacity (double)

virtual void	SetPointSize (double)

virtual void	SetPower (double)

virtual void	SetRepresentation (int)

virtual void	SetScalarRange (double, double)

void	SetScalarRange (double [2])

virtual void	SetScalarRangeFlag (int)

virtual void	SetScalarVisibility (int)

virtual void	SetSelectedAmbient (double)

virtual void	SetSelectedColor (double [3])

virtual void	SetSelectedColor (double, double, double)

virtual void	SetSelectedSpecular (double)

virtual void	SetShading (int)

virtual void	SetSliceIntersectionOpacity (double)

virtual void	SetSliceIntersectionThickness (int)

virtual void	SetSliceIntersectionVisibility (int)

virtual void	SetSpecular (double)

virtual void	SetTensorVisibility (int)

virtual void	SetTextureImageDataConnection (vtkAlgorithmOutput *ImageDataConnection)

virtual void	SetVectorVisibility (int)

void	SetViewNodeIDs (const std::vector< std::string > &viewNodeIDs)

virtual void	SetVisibility (int)

virtual void	SliceIntersectionVisibilityOff ()

virtual void	SliceIntersectionVisibilityOn ()

virtual void	TensorVisibilityOff ()

virtual void	TensorVisibilityOn ()

virtual void	VectorVisibilityOff ()

virtual void	VectorVisibilityOn ()

virtual void	VisibilityOff ()

virtual void	VisibilityOn ()

Public Member Functions inherited from vtkMRMLNode
vtkMRMLNode *	AddAndObserveNodeReferenceID (const char referenceRole, const char referencedNodeID, vtkIntArray *events=0)
	Add and observe a reference node from this node for a specific referenceRole. More...

vtkMRMLNode *	AddNodeReferenceID (const char referenceRole, const char referencedNodeID)
	Convenience method that adds a referencedNodeID at the end of the list. More...

void	AddNodeReferenceRole (const char referenceRole, const char mrmlAttributeName=0, vtkIntArray *events=0)
	Add a referenceRole. More...

virtual void	AddToSceneOff ()

virtual void	AddToSceneOn ()

virtual void	CopyReferences (vtkMRMLNode *node)
	Copy the references of the node into this. More...

void	CopyWithoutModifiedEvent (vtkMRMLNode *node)

void	CopyWithScene (vtkMRMLNode *node)
	Copy everything (including Scene and ID) from another node of the same type. More...

void	CopyWithSceneWithSingleModifiedEvent (vtkMRMLNode *node)
	Copy everything (including Scene and ID) from another node of the same type. More...

void	CopyWithSingleModifiedEvent (vtkMRMLNode *node)

void	DisableModifiedEventOff ()

void	DisableModifiedEventOn ()

virtual int	EndModify (int previousDisableModifiedEventState)
	End modifying the node. More...

virtual int	GetAddToScene ()
	node added to MRML scene. More...

const char *	GetAttribute (const char *name)
	Get value of a name value pair attribute. More...

std::vector< std::string >	GetAttributeNames ()
	Get all attribute names. More...

void	GetAttributeNames (vtkStringArray *attributeNames)
	Get all attribute names. Python-wrappable version. More...

virtual char *	GetDescription ()

virtual int	GetDisableModifiedEvent ()
	Turn on/off generating InvokeEvent for set macros. More...

virtual int	GetHideFromEditors ()
	Describes if the node is hidden. More...

virtual char *	GetID ()
	ID use by other nodes to reference this node in XML. More...

virtual int	GetInMRMLCallbackFlag ()
	Flags to avoid event loops. More...

virtual int	GetModifiedEventPending ()

virtual char *	GetName ()

vtkMRMLNode *	GetNodeReference (const char *referenceRole)

const char *	GetNodeReferenceID (const char *referenceRole)
	Utility function that returns the first node id for a specific referenceRole. More...

void	GetNodeReferenceIDs (const char referenceRole, std::vector< const char > &referencedNodeIDs)
	Return a list of the referenced node IDs. More...

void	GetNodeReferenceRoles (std::vector< std::string > &roles)

void	GetNodeReferences (const char referenceRole, std::vector< vtkMRMLNode > &nodes)
	Return a list of the referenced nodes. More...

vtkMRMLNode *	GetNthNodeReference (const char *referenceRole, int n)
	Get referenced MRML node for a specific referenceRole. More...

const char *	GetNthNodeReferenceID (const char *referenceRole, int n)
	Return the string of the Nth node ID for a specific reference role. More...

const char *	GetNthNodeReferenceRole (int n)

int	GetNumberOfNodeReferenceRoles ()

int	GetNumberOfNodeReferences (const char *referenceRole)
	Return the number of node IDs for a specific reference role (and nodes as they always have the same size). More...

virtual int	GetSaveWithScene ()
	Save node with MRML scene. More...

virtual vtkMRMLScene *	GetScene ()
	Only the scene can set itself to the node. More...

virtual int	GetSelectable ()
	Describes if the node is selectable. More...

virtual int	GetSelected ()
	Get/Set for Selected. More...

virtual char *	GetSingletonTag ()

bool	HasNodeReferenceID (const char referenceRole, const char referencedNodeID)
	Return true if referencedNodeID is in the node ID list for a specific referenceRole. More...

virtual void	HideFromEditorsOff ()

virtual void	HideFromEditorsOn ()

virtual void	InvokeCustomModifiedEvent (int eventId, void *callData=NULL)
	This method allows the node to compress events. More...

virtual int	InvokePendingModifiedEvent ()
	Invokes any modified events that are `pending`. More...

bool	IsSingleton ()

virtual void	Modified () VTK_OVERRIDE
	Customized version of Modified() allowing to compress vtkCommand::ModifiedEvent. More...

virtual void	OnNodeAddedToScene ()

void	PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE

virtual void	ProcessChildNode (vtkMRMLNode *)
	Set dependencies between this node and a child node when parsing XML file. More...

void	RemoveAttribute (const char *name)
	Remove attribute with the specified name. More...

void	RemoveNodeReferenceIDs (const char *referenceRole)
	Remove all node IDs and associated nodes for a specific referenceRole. More...

void	RemoveNthNodeReferenceID (const char *referenceRole, int n)
	Convenience method that removes the Nth node ID from the list. More...

virtual void	Reset (vtkMRMLNode *defaultNode)
	Reset node attributes to the initial state as defined in the constructor or the passed default node. More...

virtual void	SaveWithSceneOff ()

virtual void	SaveWithSceneOn ()

virtual void	SelectableOff ()

virtual void	SelectableOn ()

virtual void	SelectedOff ()

virtual void	SelectedOn ()

virtual void	SetAddToScene (int)

void	SetAddToSceneNoModify (int value)

vtkMRMLNode *	SetAndObserveNodeReferenceID (const char referenceRole, const char referencedNodeID, vtkIntArray *events=0)
	Set and observe a reference node from this node for a specific referenceRole. More...

vtkMRMLNode *	SetAndObserveNthNodeReferenceID (const char referenceRole, int n, const char referencedNodeID, vtkIntArray *events=0)
	Set and observe the Nth node ID for a specific reference role. More...

void	SetAttribute (const char name, const char value)
	Set a name value pair attribute. More...

virtual void	SetDescription (const char *)
	Text description of this node, to be set by the user. More...

void	SetDisableModifiedEvent (int onOff)

virtual void	SetHideFromEditors (int)

void	SetInMRMLCallbackFlag (int flag)

virtual void	SetName (const char *)
	Name of this node, to be set by the user. More...

vtkMRMLNode *	SetNodeReferenceID (const char referenceRole, const char referencedNodeID)
	Set a reference to a node with specified nodeID from this node for a specific referenceRole. More...

vtkMRMLNode *	SetNthNodeReferenceID (const char referenceRole, int n, const char referencedNodeID)
	Set a N-th reference from this node with specified referencedNodeID for a specific referenceRole. More...

virtual void	SetSaveWithScene (int)

virtual void	SetScene (vtkMRMLScene *scene)

virtual void	SetSelectable (int)

virtual void	SetSelected (int)

void	SetSingletonOff ()

void	SetSingletonOn ()

virtual void	SetSingletonTag (const char *)
	Tag that make this node a singleton in the scene. More...

virtual int	StartModify ()
	Start modifying the node. Disable Modify events. More...

const char *	URLDecodeString (const char *inString)
	Decode a URL string. More...

const char *	URLEncodeString (const char *inString)
	Encode a URL string. More...

virtual void	WriteNodeBodyXML (ostream &of, int indent)
	Write this node's body to a MRML file in XML format. More...

std::string	XMLAttributeDecodeString (const std::string &inString)
	Decode an XML attribute string. More...

std::string	XMLAttributeEncodeString (const std::string &inString)
	Encode an XML attribute string (replaces special characters by code sequences) More...

Static Public Member Functions
static int	GetNthScalarInvariant (int i)

static int	GetNumberOfScalarInvariants ()

static int	IsTypeOf (const char *type)

static vtkMRMLDiffusionTensorVolumeDisplayNode *	New ()

static vtkMRMLDiffusionTensorVolumeDisplayNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLGlyphableVolumeDisplayNode
static int	IsTypeOf (const char *type)

static vtkMRMLGlyphableVolumeDisplayNode *	New ()

static vtkMRMLGlyphableVolumeDisplayNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLScalarVolumeDisplayNode
static int	IsTypeOf (const char *type)

static vtkMRMLScalarVolumeDisplayNode *	New ()

static vtkMRMLScalarVolumeDisplayNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLVolumeDisplayNode
static int	IsTypeOf (const char *type)

static vtkMRMLVolumeDisplayNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLDisplayNode
static const char *	GetAttributeLocationAsString (int id)
	Converts attribute location (point or cell data) to string. More...

static int	GetAttributeLocationFromString (const char *name)
	Gets attribute location (point or cell data) from string. More...

static const char *	GetScalarRangeFlagTypeAsString (int flag)

static int	GetScalarRangeFlagTypeFromString (const char *name)
	Gets scalar range flag type from string. More...

static int	IsTypeOf (const char *type)

static vtkMRMLDisplayNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLNode
static int	IsTypeOf (const char *type)

static vtkMRMLNode *	SafeDownCast (vtkObject *o)

Protected Member Functions
virtual vtkAlgorithmOutput *	GetScalarImageDataConnection () VTK_OVERRIDE

void	operator= (const vtkMRMLDiffusionTensorVolumeDisplayNode &)

virtual void	SetInputToImageDataPipeline (vtkAlgorithmOutput *imageDataConnection) VTK_OVERRIDE
	Set the input of the pipeline. More...

	vtkMRMLDiffusionTensorVolumeDisplayNode ()

	vtkMRMLDiffusionTensorVolumeDisplayNode (const vtkMRMLDiffusionTensorVolumeDisplayNode &)

	~vtkMRMLDiffusionTensorVolumeDisplayNode ()

Protected Member Functions inherited from vtkMRMLGlyphableVolumeDisplayNode
void	operator= (const vtkMRMLGlyphableVolumeDisplayNode &)

void	SetGlyphColorNodeID (const char *id)

	vtkMRMLGlyphableVolumeDisplayNode ()

	vtkMRMLGlyphableVolumeDisplayNode (const vtkMRMLGlyphableVolumeDisplayNode &)

	~vtkMRMLGlyphableVolumeDisplayNode ()

Protected Member Functions inherited from vtkMRMLScalarVolumeDisplayNode
void	CalculateAutoLevels ()

vtkImageData *	GetScalarImageData ()

void	operator= (const vtkMRMLScalarVolumeDisplayNode &)

virtual void	SetColorNodeInternal (vtkMRMLColorNode *newColorNode) VTK_OVERRIDE

void	UpdateLookupTable (vtkMRMLColorNode *newColorNode)

	vtkMRMLScalarVolumeDisplayNode ()

	vtkMRMLScalarVolumeDisplayNode (const vtkMRMLScalarVolumeDisplayNode &)

virtual	~vtkMRMLScalarVolumeDisplayNode ()

Protected Member Functions inherited from vtkMRMLVolumeDisplayNode
void	operator= (const vtkMRMLVolumeDisplayNode &)

	vtkMRMLVolumeDisplayNode ()

	vtkMRMLVolumeDisplayNode (const vtkMRMLVolumeDisplayNode &)

	~vtkMRMLVolumeDisplayNode ()

Protected Member Functions inherited from vtkMRMLDisplayNode
void	operator= (const vtkMRMLDisplayNode &)

	vtkMRMLDisplayNode ()

	vtkMRMLDisplayNode (const vtkMRMLDisplayNode &)

	~vtkMRMLDisplayNode ()

Protected Member Functions inherited from vtkMRMLNode
virtual const char *	GetMRMLAttributeNameFromReferenceRole (const char *refRole)
	Return the mrml attribute name (if found) associated with a reference role. Return 0 otherwise. More...

virtual const char *	GetReferenceRoleFromMRMLAttributeName (const char *attName)
	Return the reference role (if found) associated with the attribute name found in a MRML scene file. Return 0 otherwise. More...

virtual char *	GetTempURLString ()

void	GetUpdatedReferencedNodeEventList (int &oldReferencedNodeUseCount, int &newReferencedNodeUseCount, vtkIntArray oldConsolidatedEventList, vtkIntArray newConsolidatedEventList, vtkMRMLNode oldReferencedNode, vtkMRMLNode newReferencedNode, vtkMRMLNodeReference referenceToIgnore, vtkIntArray newEvents)

virtual void	InvalidateNodeReferences ()

virtual bool	IsReferenceRoleGeneric (const char *refRole)
	Return true if the reference role is generic (ends with '/') or false otherwise. More...

virtual void	OnNodeReferenceAdded (vtkMRMLNodeReference *reference)

virtual void	OnNodeReferenceModified (vtkMRMLNodeReference *reference)
	Called when a referenced node pointer is modified. More...

virtual void	OnNodeReferenceRemoved (vtkMRMLNodeReference *reference)
	Called when a referenced node pointer is removed (set to NULL). More...

void	operator= (const vtkMRMLNode &)

void	ParseReferencesAttribute (const char *attValue, std::map< std::string, std::string > &references)

virtual void	SetTempURLString (const char *)
	Get/Set the string used to manage encoding/decoding of strings/URLs with special characters. More...

vtkMRMLNode *	UpdateNodeReferenceEventObserver (vtkMRMLNode oldReferencedNode, vtkMRMLNode newReferencedNode, vtkIntArray newEvents, vtkMRMLNodeReference referenceToIgnore)

virtual void	UpdateNodeReferences (const char *referenceRole=NULL)

virtual void	UpdateNthNodeReference (const char *referenceRole, int n)

	vtkMRMLNode ()

	vtkMRMLNode (const vtkMRMLNode &)

virtual	~vtkMRMLNode ()
	critical to have a virtual destructor! More...

Static Protected Member Functions
static std::vector< int >	GetSupportedColorModes ()

Static Protected Member Functions inherited from vtkMRMLNode
static void	MRMLCallback (vtkObject caller, unsigned long eid, void clientData, void *callData)

Protected Attributes
vtkDiffusionTensorGlyph *	DiffusionTensorGlyphFilter

vtkDiffusionTensorMathematics *	DTIMathematics
	used for main scalar invarant (can be 1 or 3 component) More...

vtkDiffusionTensorMathematics *	DTIMathematicsAlpha
	used for calculating single component magnitude for color images More...

vtkImageCast *	ImageCast

vtkImageMathematics *	ImageMath

int	ScalarInvariant
	Scalar display parameters. More...

vtkImageShiftScale *	ShiftScale

Protected Attributes inherited from vtkMRMLGlyphableVolumeDisplayNode
vtkMRMLColorNode *	GlyphColorNode

char *	GlyphColorNodeID

int	VisualizationMode

Protected Attributes inherited from vtkMRMLScalarVolumeDisplayNode
vtkImageAccumulate *	Accumulate
	Used internally in CalculateScalarAutoLevels and CalculateStatisticsAutoLevels More...

vtkImageLogic *	AlphaLogic

vtkImageAppendComponents *	AppendComponents

int	ApplyThreshold

int	AutoThreshold

int	AutoWindowLevel

vtkImageBimodalAnalysis *	Bimodal

vtkImageExtractComponents *	ExtractAlpha

vtkImageExtractComponents *	ExtractRGB

int	Interpolate
	Booleans. More...

bool	IsInCalculateAutoLevels

vtkImageMapToColors *	MapToColors

vtkImageMapToWindowLevelColors *	MapToWindowLevelColors

vtkImageStencil *	MultiplyAlpha

vtkImageThreshold *	Threshold

bool	WindowLevelLocked

std::vector< WindowLevelPreset >	WindowLevelPresets
	window level presets More...

Protected Attributes inherited from vtkMRMLDisplayNode
int	ActiveAttributeLocation

char *	ActiveScalarName

double	Ambient

int	BackfaceCulling

int	Clipping

double	Color [3]

vtkMRMLColorNode *	ColorNode

char *	ColorNodeID

double	Diffuse

double	EdgeColor [3]

int	EdgeVisibility

int	FrontfaceCulling

int	InterpolateTexture

int	Interpolation

vtkWeakPointer< vtkMRMLDisplayableNode >	LastFoundDisplayableNode
	Cached value of last found displayable node (it is expensive to determine it) More...

int	Lighting

double	LineWidth

double	Opacity

double	PointSize

double	Power

int	Representation

double	ScalarRange [2]

int	ScalarRangeFlag

int	ScalarVisibility

double	SelectedAmbient

double	SelectedColor [3]

double	SelectedSpecular

int	Shading

double	SliceIntersectionOpacity

int	SliceIntersectionThickness

int	SliceIntersectionVisibility

double	Specular

int	TensorVisibility

vtkAlgorithmOutput *	TextureImageDataConnection

int	VectorVisibility

std::vector< std::string >	ViewNodeIDs

int	Visibility

Protected Attributes inherited from vtkMRMLNode
int	AddToScene

AttributesType	Attributes

char *	Description

int	HideFromEditors

char *	ID

int	InMRMLCallbackFlag
	Flag to avoid event loops More...

vtkCallbackCommand *	MRMLCallbackCommand
	Holders for MRML callbacks. More...

vtkObserverManager *	MRMLObserverManager

char *	Name

NodeReferenceEventsType	NodeReferenceEvents

std::map< std::string, std::string >	NodeReferenceMRMLAttributeNames

NodeReferencesType	NodeReferences

int	SaveWithScene

vtkWeakPointer< vtkMRMLScene >	Scene

int	Selectable

int	Selected

Additional Inherited Members
Protected Types inherited from vtkMRMLNode
typedef std::map< std::string, std::string >	AttributesType

typedef std::map< std::string, vtkSmartPointer< vtkIntArray > >	NodeReferenceEventsType

typedef std::vector< vtkSmartPointer< vtkMRMLNodeReference > >	NodeReferenceListType

typedef std::map< std::string, NodeReferenceListType >	NodeReferencesType

Detailed Description

MRML node for representing a volume (image stack).

Volume nodes describe data sets that can be thought of as stacks of 2D images that form a 3D volume. Volume nodes describe where the images are stored on disk, how to render the data (window and level), and how to read the files. This information is extracted from the image headers (if they exist) at the time the MRML file is generated. Consequently, MRML files isolate MRML browsers from understanding how to read the myriad of file formats for medical data.

Definition at line 40 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

Member Typedef Documentation

◆ Superclass

typedef vtkMRMLGlyphableVolumeDisplayNode vtkMRMLDiffusionTensorVolumeDisplayNode::Superclass

Definition at line 44 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

Constructor & Destructor Documentation

◆ vtkMRMLDiffusionTensorVolumeDisplayNode() [1/2]

vtkMRMLDiffusionTensorVolumeDisplayNode::vtkMRMLDiffusionTensorVolumeDisplayNode ( )

protected

◆ ~vtkMRMLDiffusionTensorVolumeDisplayNode()

vtkMRMLDiffusionTensorVolumeDisplayNode::~vtkMRMLDiffusionTensorVolumeDisplayNode ( )

protected

◆ vtkMRMLDiffusionTensorVolumeDisplayNode() [2/2]

vtkMRMLDiffusionTensorVolumeDisplayNode::vtkMRMLDiffusionTensorVolumeDisplayNode ( const vtkMRMLDiffusionTensorVolumeDisplayNode & )

protected

Member Function Documentation

◆ AddSliceGlyphDisplayNodes()

virtual void vtkMRMLDiffusionTensorVolumeDisplayNode::AddSliceGlyphDisplayNodes ( vtkMRMLVolumeNode * node )

virtual

add slice glyph display nodes if not already present and return it

◆ Copy()

virtual void vtkMRMLDiffusionTensorVolumeDisplayNode::Copy ( vtkMRMLNode * node )

virtual

Copy the node's attributes to this object

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

◆ CreateNodeInstance()

virtual vtkMRMLNode* vtkMRMLDiffusionTensorVolumeDisplayNode::CreateNodeInstance ( )

virtual

Create instance of the default node. Like New only virtual.

Note: Subclasses should implement this method

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

◆ GetBackgroundImageStencilDataConnection()

virtual vtkAlgorithmOutput* vtkMRMLDiffusionTensorVolumeDisplayNode::GetBackgroundImageStencilDataConnection ( )

virtual

Get background mask stencil Reimplemented to return 0 when the background mask is not used.

Reimplemented from vtkMRMLScalarVolumeDisplayNode.

◆ GetClassName()

virtual const char* vtkMRMLDiffusionTensorVolumeDisplayNode::GetClassName ( )

virtual

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

◆ GetDisplayScalarRange()

virtual void vtkMRMLDiffusionTensorVolumeDisplayNode::GetDisplayScalarRange ( double range[2] )

virtual

Defines the expected range of the output data for given imageData after having been mapped through the current display options

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

◆ GetDTIMathematics()

virtual vtkDiffusionTensorMathematics* vtkMRMLDiffusionTensorVolumeDisplayNode::GetDTIMathematics ( )

virtual

◆ GetDTIMathematicsAlpha()

virtual vtkDiffusionTensorMathematics* vtkMRMLDiffusionTensorVolumeDisplayNode::GetDTIMathematicsAlpha ( )

virtual

◆ GetInputImageDataConnection()

virtual vtkAlgorithmOutput* vtkMRMLDiffusionTensorVolumeDisplayNode::GetInputImageDataConnection ( )

virtual

Get the input of the pipeline.

Reimplemented from vtkMRMLScalarVolumeDisplayNode.

◆ GetNodeTagName()

virtual const char* vtkMRMLDiffusionTensorVolumeDisplayNode::GetNodeTagName ( )

inlinevirtual

Get node XML tag name (like Volume, Model)

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

Definition at line 63 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

◆ GetNthScalarInvariant()

static int vtkMRMLDiffusionTensorVolumeDisplayNode::GetNthScalarInvariant ( int i )

static

◆ GetNumberOfScalarInvariants()

static int vtkMRMLDiffusionTensorVolumeDisplayNode::GetNumberOfScalarInvariants ( )

static

◆ GetScalarImageDataConnection()

virtual vtkAlgorithmOutput* vtkMRMLDiffusionTensorVolumeDisplayNode::GetScalarImageDataConnection ( )

protectedvirtual

Reimplemented from vtkMRMLScalarVolumeDisplayNode.

◆ GetScalarInvariant()

virtual int vtkMRMLDiffusionTensorVolumeDisplayNode::GetScalarInvariant ( )

virtual

Display Information.

MRML nodes that are observed Get type of scalar invariant (tensor-derived scalar, invariant to tensor rotation) selected for display.

◆ GetScalarInvariantAsString()

virtual const char* vtkMRMLDiffusionTensorVolumeDisplayNode::GetScalarInvariantAsString ( )

inlinevirtual

Return a text string describing the ScalarInvariant variable

Definition at line 142 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

◆ GetShiftScale()

virtual vtkImageShiftScale* vtkMRMLDiffusionTensorVolumeDisplayNode::GetShiftScale ( )

virtual

◆ GetSliceGlyphDisplayNodes()

virtual std::vector< vtkMRMLGlyphableVolumeSliceDisplayNode*> vtkMRMLDiffusionTensorVolumeDisplayNode::GetSliceGlyphDisplayNodes ( vtkMRMLVolumeNode * node )

virtual

get associated slice glyph display node or NULL if not set

◆ GetSupportedColorModes()

static std::vector<int> vtkMRMLDiffusionTensorVolumeDisplayNode::GetSupportedColorModes ( )

staticprotected

◆ IsA()

virtual int vtkMRMLDiffusionTensorVolumeDisplayNode::IsA ( const char * type )

virtual

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

◆ IsTypeOf()

static int vtkMRMLDiffusionTensorVolumeDisplayNode::IsTypeOf ( const char * type )

static

◆ New()

static vtkMRMLDiffusionTensorVolumeDisplayNode* vtkMRMLDiffusionTensorVolumeDisplayNode::New ( )

static

◆ operator=()

void vtkMRMLDiffusionTensorVolumeDisplayNode::operator= ( const vtkMRMLDiffusionTensorVolumeDisplayNode & )

protected

◆ PrintSelf()

void vtkMRMLDiffusionTensorVolumeDisplayNode::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

◆ ProcessMRMLEvents()

virtual void vtkMRMLDiffusionTensorVolumeDisplayNode::ProcessMRMLEvents	(	vtkObject *	,
		unsigned	long,
		void *
	)

virtual

alternative method to propagate events generated in Display nodes

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

◆ ReadXMLAttributes()

virtual void vtkMRMLDiffusionTensorVolumeDisplayNode::ReadXMLAttributes ( const char ** atts )

virtual

Set node attributes

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

◆ SafeDownCast()

static vtkMRMLDiffusionTensorVolumeDisplayNode* vtkMRMLDiffusionTensorVolumeDisplayNode::SafeDownCast ( vtkObject * o )

static

◆ SetInputToImageDataPipeline()

virtual void vtkMRMLDiffusionTensorVolumeDisplayNode::SetInputToImageDataPipeline ( vtkAlgorithmOutput * imageDataConnection )

protectedvirtual

Set the input of the pipeline.

Reimplemented from vtkMRMLScalarVolumeDisplayNode.

◆ SetScalarInvariant()

virtual void vtkMRMLDiffusionTensorVolumeDisplayNode::SetScalarInvariant ( int )

virtual

Get type of scalar invariant (tensor-derived scalar, invariant to tensor rotation) selected for display.

◆ SetScalarInvariantToFractionalAnisotropy()

void vtkMRMLDiffusionTensorVolumeDisplayNode::SetScalarInvariantToFractionalAnisotropy ( )

inline

Set scalar invariant to FA (normalized variance of eigenvalues)

Definition at line 118 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

◆ SetScalarInvariantToLinearMeasure()

void vtkMRMLDiffusionTensorVolumeDisplayNode::SetScalarInvariantToLinearMeasure ( )

inline

Set scalar invariant to C_L (Westin's linear measure)

Definition at line 124 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

◆ SetScalarInvariantToPlanarMeasure()

void vtkMRMLDiffusionTensorVolumeDisplayNode::SetScalarInvariantToPlanarMeasure ( )

inline

Set scalar invariant to C_P (Westin's planar measure)

Definition at line 130 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

◆ SetScalarInvariantToRelativeAnisotropy()

void vtkMRMLDiffusionTensorVolumeDisplayNode::SetScalarInvariantToRelativeAnisotropy ( )

inline

Set scalar invariant to relative anisotropy.

Definition at line 112 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

◆ SetScalarInvariantToSphericalMeasure()

void vtkMRMLDiffusionTensorVolumeDisplayNode::SetScalarInvariantToSphericalMeasure ( )

inline

Set scalar invariant to C_S (Westin's spherical measure)

Definition at line 136 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

◆ SetScalarInvariantToTrace()

void vtkMRMLDiffusionTensorVolumeDisplayNode::SetScalarInvariantToTrace ( )

inline

Set scalar invariant to trace (sum of eigenvalues).

Definition at line 106 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

◆ UpdateImageDataPipeline()

virtual void vtkMRMLDiffusionTensorVolumeDisplayNode::UpdateImageDataPipeline ( )

virtual

Update the pipeline based on this node attributes

Reimplemented from vtkMRMLVolumeDisplayNode.

◆ UpdateReferenceID()

virtual void vtkMRMLDiffusionTensorVolumeDisplayNode::UpdateReferenceID	(	const char *	oldID,
		const char *	newID
	)

virtual

Update the stored reference to another node in the scene

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

◆ UpdateReferences()

virtual void vtkMRMLDiffusionTensorVolumeDisplayNode::UpdateReferences ( )

virtual

Updates this node if it depends on other nodes when the node is deleted in the scene

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

◆ UpdateScene()

virtual void vtkMRMLDiffusionTensorVolumeDisplayNode::UpdateScene ( vtkMRMLScene * scene )

virtual

Finds the storage node and read the data

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

◆ WriteXML()

virtual void vtkMRMLDiffusionTensorVolumeDisplayNode::WriteXML	(	ostream &	of,
		int	indent
	)

virtual

Write this node's information to a MRML file in XML format.

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

Member Data Documentation

◆ DiffusionTensorGlyphFilter

vtkDiffusionTensorGlyph* vtkMRMLDiffusionTensorVolumeDisplayNode::DiffusionTensorGlyphFilter

protected

Definition at line 192 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

◆ DTIMathematics

vtkDiffusionTensorMathematics* vtkMRMLDiffusionTensorVolumeDisplayNode::DTIMathematics

protected

used for main scalar invarant (can be 1 or 3 component)

Definition at line 195 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

◆ DTIMathematicsAlpha

vtkDiffusionTensorMathematics* vtkMRMLDiffusionTensorVolumeDisplayNode::DTIMathematicsAlpha

protected

used for calculating single component magnitude for color images

Definition at line 197 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

◆ ImageCast

vtkImageCast* vtkMRMLDiffusionTensorVolumeDisplayNode::ImageCast

protected

Definition at line 203 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

◆ ImageMath

vtkImageMathematics* vtkMRMLDiffusionTensorVolumeDisplayNode::ImageMath

protected

Definition at line 201 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

◆ ScalarInvariant

int vtkMRMLDiffusionTensorVolumeDisplayNode::ScalarInvariant

protected

Scalar display parameters.

Definition at line 206 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

◆ ShiftScale

vtkImageShiftScale* vtkMRMLDiffusionTensorVolumeDisplayNode::ShiftScale

protected

Definition at line 199 of file vtkMRMLDiffusionTensorVolumeDisplayNode.h.

The documentation for this class was generated from the following file:

Libs/MRML/Core/vtkMRMLDiffusionTensorVolumeDisplayNode.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ Superclass

Constructor & Destructor Documentation

◆ vtkMRMLDiffusionTensorVolumeDisplayNode() [1/2]

◆ ~vtkMRMLDiffusionTensorVolumeDisplayNode()

◆ vtkMRMLDiffusionTensorVolumeDisplayNode() [2/2]

Member Function Documentation

◆ AddSliceGlyphDisplayNodes()

◆ Copy()

◆ CreateNodeInstance()

◆ GetBackgroundImageStencilDataConnection()

◆ GetClassName()

◆ GetDisplayScalarRange()

◆ GetDTIMathematics()

◆ GetDTIMathematicsAlpha()

◆ GetInputImageDataConnection()

◆ GetNodeTagName()

◆ GetNthScalarInvariant()

◆ GetNumberOfScalarInvariants()

◆ GetScalarImageDataConnection()

◆ GetScalarInvariant()

◆ GetScalarInvariantAsString()

◆ GetShiftScale()

◆ GetSliceGlyphDisplayNodes()

◆ GetSupportedColorModes()

◆ IsA()

◆ IsTypeOf()

◆ New()

◆ operator=()

◆ PrintSelf()

◆ ProcessMRMLEvents()

◆ ReadXMLAttributes()

◆ SafeDownCast()

◆ SetInputToImageDataPipeline()

◆ SetScalarInvariant()

◆ SetScalarInvariantToFractionalAnisotropy()

◆ SetScalarInvariantToLinearMeasure()

◆ SetScalarInvariantToPlanarMeasure()

◆ SetScalarInvariantToRelativeAnisotropy()

◆ SetScalarInvariantToSphericalMeasure()

◆ SetScalarInvariantToTrace()

◆ UpdateImageDataPipeline()

◆ UpdateReferenceID()

◆ UpdateReferences()

◆ UpdateScene()

◆ WriteXML()

Member Data Documentation

◆ DiffusionTensorGlyphFilter

◆ DTIMathematics

◆ DTIMathematicsAlpha

◆ ImageCast

◆ ImageMath

◆ ScalarInvariant

◆ ShiftScale