vtkSlicerVolumesLogic Class Reference

#include <Modules/Loadable/Volumes/Logic/vtkSlicerVolumesLogic.h>

Inheritance diagram for vtkSlicerVolumesLogic:

Collaboration diagram for vtkSlicerVolumesLogic:

Classes
struct	VolumeDisplayPreset

Public Types
typedef ArchetypeVolumeNodeSet(*	ArchetypeVolumeNodeSetFactory) (std::string &volumeName, vtkMRMLScene *scene, int options)
enum	LoadingOptions {   LabelMap = 1, CenterImage = 2, SingleFile = 4, AutoWindowLevel = 8,   DiscardOrientation = 16 }
	Loading options, bitfield. More...
typedef vtkSlicerVolumesLogic	Self
typedef vtkSlicerModuleLogic	Superclass
Public Types inherited from vtkSlicerModuleLogic
typedef vtkMRMLAbstractLogic	Superclass
Public Types inherited from vtkMRMLAbstractLogic
typedef vtkObject	Superclass
typedef void(vtkMRMLAbstractLogic::*	TaskFunctionPointer) (void *clientdata)

Public Member Functions
vtkMRMLScalarVolumeNode *	AddArchetypeScalarVolume (const char *filename, const char *volname, int loadingOptions, vtkStringArray *fileList)
vtkMRMLVolumeNode *	AddArchetypeVolume (const char *filename, const char *volname, int loadingOptions)
vtkMRMLVolumeNode *	AddArchetypeVolume (const char *filename, const char *volname, int loadingOptions, vtkStringArray *fileList)
vtkMRMLVolumeNode *	AddArchetypeVolume (const char *filename, const char *volname)
bool	ApplyVolumeDisplayPreset (vtkMRMLVolumeDisplayNode *displayNode, std::string presetId)
void	CenterVolume (vtkMRMLVolumeNode *volumeNode)
std::string	CheckForLabelVolumeValidity (vtkMRMLScalarVolumeNode *volumeNode, vtkMRMLLabelMapVolumeNode *labelNode)
vtkMRMLScalarVolumeNode *	CloneVolume (vtkMRMLVolumeNode *volumeNode, const char *name)
std::string	CompareVolumeGeometry (vtkMRMLScalarVolumeNode *volumeNode1, vtkMRMLScalarVolumeNode *volumeNode2)
void	ComputeTkRegVox2RASMatrix (vtkMRMLVolumeNode *VNode, vtkMatrix4x4 *M)
	Convenience method to compute a volume's Vox2RAS-tkreg Matrix. More...
vtkMRMLLabelMapVolumeNode *	CreateAndAddLabelVolume (vtkMRMLVolumeNode *volumeNode, const char *name)
vtkMRMLLabelMapVolumeNode *	CreateAndAddLabelVolume (vtkMRMLScene *scene, vtkMRMLVolumeNode *volumeNode, const char *name)
	Create a label map volume to match the given volumeNode and add it to the scene. More...
vtkMRMLLabelMapVolumeNode *	CreateLabelVolume (vtkMRMLVolumeNode *volumeNode, const char *name)
vtkMRMLLabelMapVolumeNode *	CreateLabelVolume (vtkMRMLScene *scene, vtkMRMLVolumeNode *volumeNode, const char *name)
vtkMRMLLabelMapVolumeNode *	CreateLabelVolumeFromVolume (vtkMRMLScene *scene, vtkMRMLLabelMapVolumeNode *outputVolume, vtkMRMLVolumeNode *inputVolume)
vtkMRMLScalarVolumeNode *	CreateScalarVolumeFromVolume (vtkMRMLScene *scene, vtkMRMLScalarVolumeNode *outputVolume, vtkMRMLVolumeNode *inputVolume)
vtkMRMLLabelMapVolumeNode *	FillLabelVolumeFromTemplate (vtkMRMLLabelMapVolumeNode *labelNode, vtkMRMLVolumeNode *templateNode)
vtkMRMLLabelMapVolumeNode *	FillLabelVolumeFromTemplate (vtkMRMLScene *scene, vtkMRMLLabelMapVolumeNode *labelNode, vtkMRMLVolumeNode *templateNode)
std::string	GetAppliedVolumeDisplayPresetId (vtkMRMLVolumeDisplayNode *displayNode)
virtual const char *	GetClassName ()
virtual double	GetCompareVolumeGeometryEpsilon ()
virtual int	GetCompareVolumeGeometryPrecision ()
void	GetVolumeCenteredOrigin (vtkMRMLVolumeNode *volumeNode, double *origin)
VolumeDisplayPreset	GetVolumeDisplayPreset (const std::string &presetId)
std::vector< std::string >	GetVolumeDisplayPresetIDs ()
	Method to get a vector to currently defined window level preset IDs. More...
virtual int	IsA (const char *type)
int	IsFreeSurferVolume (const char *filename)
void	PreRegisterArchetypeVolumeNodeSetFactory (ArchetypeVolumeNodeSetFactory factory)
void	PrintSelf (ostream &os, vtkIndent indent) override
void	RegisterArchetypeVolumeNodeSetFactory (ArchetypeVolumeNodeSetFactory factory)
int	SaveArchetypeVolume (const char *filename, vtkMRMLVolumeNode *volumeNode)
	Write volume's image data to a specified file. More...
void	SetCompareVolumeGeometryEpsilon (double epsilon)
void	TranslateFreeSurferRegistrationMatrixIntoSlicerRASToRASMatrix (vtkMRMLVolumeNode *V1Node, vtkMRMLVolumeNode *V2Node, vtkMatrix4x4 *FSRegistrationMatrix, vtkMatrix4x4 *ResultsMatrix)
Public Member Functions inherited from vtkSlicerModuleLogic
virtual vtkSlicerApplicationLogic *	GetApplicationLogic ()
	Get access to overall application state. More...
virtual vtkMRMLAbstractLogic *	GetModuleLogic (const char *moduleName)
	Convenience method for getting another module's logic from the application logic. More...
std::string	GetModuleShareDirectory () const
void	PrintSelf (ostream &os, vtkIndent indent) override
void	SetModuleShareDirectory (const std::string &shareDirectory)
Public Member Functions inherited from vtkMRMLAbstractLogic
virtual vtkMRMLApplicationLogic *	GetMRMLApplicationLogic () const
	Get access to overall application state. More...
vtkMRMLScene *	GetMRMLScene () const
	Return a reference to the current MRML scene. More...
void	PrintSelf (ostream &os, vtkIndent indent) override
virtual void	SetMRMLApplicationLogic (vtkMRMLApplicationLogic *logic)
void	SetMRMLScene (vtkMRMLScene *newScene)
	Set and observe the MRMLScene. More...

Static Public Member Functions
static void	ClearVolumeImageData (vtkMRMLVolumeNode *volumeNode)
	Clear the image data of a volume node to contain all zeros. More...
static vtkMRMLScalarVolumeNode *	CloneVolume (vtkMRMLScene *scene, vtkMRMLVolumeNode *volumeNode, const char *name, bool cloneImageData=true)
static vtkMRMLVolumeNode *	CloneVolumeGeneric (vtkMRMLScene *scene, vtkMRMLVolumeNode *volumeNode, const char *name, bool cloneImageData=true)
	Create a deep copy of a volumeNode and add it to the scene. More...
static vtkMRMLScalarVolumeNode *	CloneVolumeWithoutImageData (vtkMRMLScene *scene, vtkMRMLVolumeNode *volumeNode, const char *name)
static int	IsTypeOf (const char *type)
static vtkSlicerVolumesLogic *	New ()
static vtkMRMLScalarVolumeNode *	ResampleVolumeToReferenceVolume (vtkMRMLVolumeNode *inputVolumeNode, vtkMRMLVolumeNode *referenceVolumeNode)
static vtkSlicerVolumesLogic *	SafeDownCast (vtkObject *o)
Static Public Member Functions inherited from vtkSlicerModuleLogic
static int	IsTypeOf (const char *type)
static vtkSlicerModuleLogic *	New ()
	The Usual vtk class functions. More...
static vtkSlicerModuleLogic *	SafeDownCast (vtkObject *o)
Static Public Member Functions inherited from vtkMRMLAbstractLogic
static int	IsTypeOf (const char *type)
static vtkMRMLAbstractLogic *	New ()
static vtkMRMLAbstractLogic *	SafeDownCast (vtkObject *o)

Public Attributes
std::vector< VolumeDisplayPreset >	VolumeDisplayPresets

Protected Types
typedef std::list< ArchetypeVolumeNodeSetFactory >	NodeSetFactoryRegistry

Protected Member Functions
vtkMRMLVolumeNode *	AddArchetypeVolume (const NodeSetFactoryRegistry &volumeRegistry, const char *filename, const char *volname, int loadingOptions, vtkStringArray *fileList)
void	InitializeDefaultVolumeDisplayPresets ()
	Read default volume display presets from configuration file. More...
void	InitializeStorageNode (vtkMRMLStorageNode *storageNode, const char *filename, vtkStringArray *fileList, vtkMRMLScene *mrmlScene=nullptr)
void	operator= (const vtkSlicerVolumesLogic &)
void	ProcessMRMLNodesEvents (vtkObject *caller, unsigned long event, void *callData) override
void	SetAndObserveColorToDisplayNode (vtkMRMLDisplayNode *displayNode, int labelmap, const char *filename)
	vtkSlicerVolumesLogic ()
	vtkSlicerVolumesLogic (const vtkSlicerVolumesLogic &)
	~vtkSlicerVolumesLogic () override
Protected Member Functions inherited from vtkSlicerModuleLogic
	vtkSlicerModuleLogic ()
	~vtkSlicerModuleLogic () override
Protected Member Functions inherited from vtkMRMLAbstractLogic
int	EndModify (bool wasModifying)
virtual bool	EnterMRMLLogicsCallback () const
virtual bool	EnterMRMLNodesCallback () const
virtual bool	EnterMRMLSceneCallback () const
bool	GetDisableModifiedEvent () const
int	GetInMRMLLogicsCallbackFlag () const
int	GetInMRMLNodesCallbackFlag () const
int	GetInMRMLSceneCallbackFlag () const
vtkCallbackCommand *	GetMRMLLogicsCallbackCommand ()
vtkObserverManager *	GetMRMLLogicsObserverManager () const
vtkCallbackCommand *	GetMRMLNodesCallbackCommand ()
vtkObserverManager *	GetMRMLNodesObserverManager () const
vtkCallbackCommand *	GetMRMLSceneCallbackCommand ()
vtkObserverManager *	GetMRMLSceneObserverManager () const
int	GetPendingModifiedEventCount () const
int	GetProcessingMRMLSceneEvent () const
	Return the event id currently processed or 0 if any. More...
int	InvokePendingModifiedEvent ()
void	Modified () override
virtual void	ObserveMRMLScene ()
virtual void	OnMRMLNodeModified (vtkMRMLNode *)
virtual void	OnMRMLSceneEndBatchProcess ()
virtual void	OnMRMLSceneEndClose ()
virtual void	OnMRMLSceneEndImport ()
virtual void	OnMRMLSceneEndRestore ()
virtual void	OnMRMLSceneNew ()
virtual void	OnMRMLSceneNodeAdded (vtkMRMLNode *)
virtual void	OnMRMLSceneNodeRemoved (vtkMRMLNode *)
virtual void	OnMRMLSceneStartBatchProcess ()
virtual void	OnMRMLSceneStartClose ()
virtual void	OnMRMLSceneStartImport ()
virtual void	OnMRMLSceneStartRestore ()
virtual void	ProcessMRMLLogicsEvents (vtkObject *caller, unsigned long event, void *callData)
virtual void	ProcessMRMLSceneEvents (vtkObject *caller, unsigned long event, void *callData)
virtual void	RegisterNodes ()
void	SetAndObserveMRMLSceneEventsInternal (vtkMRMLScene *newScene, vtkIntArray *events, vtkFloatArray *priorities=nullptr)
void	SetDisableModifiedEvent (bool onOff)
void	SetInMRMLLogicsCallbackFlag (int flag)
void	SetInMRMLNodesCallbackFlag (int flag)
void	SetInMRMLSceneCallbackFlag (int flag)
virtual void	SetMRMLSceneInternal (vtkMRMLScene *newScene)
void	SetProcessingMRMLSceneEvent (int event)
bool	StartModify ()
virtual void	UnobserveMRMLScene ()
virtual void	UpdateFromMRMLScene ()
	vtkMRMLAbstractLogic ()
	~vtkMRMLAbstractLogic () override

Protected Attributes
double	CompareVolumeGeometryEpsilon
int	CompareVolumeGeometryPrecision
NodeSetFactoryRegistry	VolumeRegistry

Additional Inherited Members
Static Protected Member Functions inherited from vtkMRMLAbstractLogic
static void	MRMLLogicsCallback (vtkObject *caller, unsigned long eid, void *clientData, void *callData)
	MRMLLogicCallback is a static function to relay modified events from the logics. More...
static void	MRMLNodesCallback (vtkObject *caller, unsigned long eid, void *clientData, void *callData)
	MRMLNodesCallback is a static function to relay modified events from the nodes. More...
static void	MRMLSceneCallback (vtkObject *caller, unsigned long eid, void *clientData, void *callData)

Detailed Description

Definition at line 63 of file vtkSlicerVolumesLogic.h.

Member Typedef Documentation

ArchetypeVolumeNodeSetFactory

typedef ArchetypeVolumeNodeSet(* vtkSlicerVolumesLogic::ArchetypeVolumeNodeSetFactory) (std::string &volumeName, vtkMRMLScene *scene, int options)

Factory function to create a volume node, display node, and storage node, configure the in the specified scene, and initialize the storage node with the "options".

Definition at line 98 of file vtkSlicerVolumesLogic.h.

NodeSetFactoryRegistry

typedef std::list<ArchetypeVolumeNodeSetFactory> vtkSlicerVolumesLogic::NodeSetFactoryRegistry

protected

Definition at line 332 of file vtkSlicerVolumesLogic.h.

Self

typedef vtkSlicerVolumesLogic vtkSlicerVolumesLogic::Self

Definition at line 71 of file vtkSlicerVolumesLogic.h.

Superclass

typedef vtkSlicerModuleLogic vtkSlicerVolumesLogic::Superclass

Definition at line 69 of file vtkSlicerVolumesLogic.h.

Member Enumeration Documentation

LoadingOptions

enum vtkSlicerVolumesLogic::LoadingOptions

Loading options, bitfield.

Enumerator
LabelMap
CenterImage
SingleFile
AutoWindowLevel
DiscardOrientation

Definition at line 87 of file vtkSlicerVolumesLogic.h.

Constructor & Destructor Documentation

vtkSlicerVolumesLogic() [1/2]

vtkSlicerVolumesLogic::vtkSlicerVolumesLogic ( )

protected

~vtkSlicerVolumesLogic()

vtkSlicerVolumesLogic::~vtkSlicerVolumesLogic ( )

overrideprotected

vtkSlicerVolumesLogic() [2/2]

vtkSlicerVolumesLogic::vtkSlicerVolumesLogic ( const vtkSlicerVolumesLogic &  )

protected

Member Function Documentation

AddArchetypeScalarVolume()

vtkMRMLScalarVolumeNode* vtkSlicerVolumesLogic::AddArchetypeScalarVolume	(	const char *	filename,
		const char *	volname,
		int	loadingOptions,
		vtkStringArray *	fileList
	)

Load a scalar volume function directly, bypassing checks of all factories done in AddArchetypeVolume.

See also

AddArchetypeVolume(const NodeSetFactoryRegistry& volumeRegistry, const char* filename, const char* volname, int loadingOptions, vtkStringArray *fileList)

AddArchetypeVolume() [1/4]

vtkMRMLVolumeNode* vtkSlicerVolumesLogic::AddArchetypeVolume ( const char *  filename, const char *  volname, int  loadingOptions  )

inline

Overloaded function of AddArchetypeVolume to provide more loading options, where variable loadingOptions is bit-coded as following: bit 0: label map bit 1: centered bit 2: loading single file bit 3: calculate window level automatically bit 4: discard image orientation higher bits are reserved for future use

Definition at line 132 of file vtkSlicerVolumesLogic.h.

AddArchetypeVolume() [2/4]

vtkMRMLVolumeNode* vtkSlicerVolumesLogic::AddArchetypeVolume	(	const char *	filename,
		const char *	volname,
		int	loadingOptions,
		vtkStringArray *	fileList
	)

AddArchetypeVolume() [3/4]

vtkMRMLVolumeNode* vtkSlicerVolumesLogic::AddArchetypeVolume ( const char *  filename, const char *  volname  )

inline

Definition at line 137 of file vtkSlicerVolumesLogic.h.

AddArchetypeVolume() [4/4]

vtkMRMLVolumeNode* vtkSlicerVolumesLogic::AddArchetypeVolume ( const NodeSetFactoryRegistry &  volumeRegistry, const char *  filename, const char *  volname, int  loadingOptions, vtkStringArray *  fileList  )

protected

Convenience function allowing to try to load a volume using a given list of NodeSetFactoryRegistry

ApplyVolumeDisplayPreset()

bool vtkSlicerVolumesLogic::ApplyVolumeDisplayPreset	(	vtkMRMLVolumeDisplayNode *	displayNode,
		std::string	presetId
	)

Method to set volume window/level based on a volume display preset. Returns true on success.

CenterVolume()

void vtkSlicerVolumesLogic::CenterVolume

(

vtkMRMLVolumeNode *

volumeNode

)

Center the volume on the origin (0,0,0)

See also

GetVolumeCenteredOrigin()

CheckForLabelVolumeValidity()

std::string vtkSlicerVolumesLogic::CheckForLabelVolumeValidity	(	vtkMRMLScalarVolumeNode *	volumeNode,
		vtkMRMLLabelMapVolumeNode *	labelNode
	)

Return a string listing any warnings about the spatial validity of the labelmap with respect to the volume. An empty string indicates that the two volumes are identical samplings of the same spatial region and that the second volume input is a label map.

See also

CompareVolumeGeometry

ClearVolumeImageData()

static void vtkSlicerVolumesLogic::ClearVolumeImageData ( vtkMRMLVolumeNode *  volumeNode )

static

Clear the image data of a volume node to contain all zeros.

CloneVolume() [1/2]

vtkMRMLScalarVolumeNode* vtkSlicerVolumesLogic::CloneVolume	(	vtkMRMLVolumeNode *	volumeNode,
		const char *	name
	)

Create a deep copy of a volumeNode and add it to the current scene. If cloneImageData is false then the volume node is created without image data.

See also

GetMRMLScene()

CloneVolume() [2/2]

static vtkMRMLScalarVolumeNode* vtkSlicerVolumesLogic::CloneVolume ( vtkMRMLScene *  scene, vtkMRMLVolumeNode *  volumeNode, const char *  name, bool  cloneImageData = true  )

static

Create a deep copy of a volumeNode and add it to the scene Only works for vtkMRMLScalarVolumeNode. The method is kept as is for background compatibility only, internally it calls CloneVolumeGeneric.

See also

CloneVolumeGeneric

CloneVolumeGeneric()

static vtkMRMLVolumeNode* vtkSlicerVolumesLogic::CloneVolumeGeneric ( vtkMRMLScene *  scene, vtkMRMLVolumeNode *  volumeNode, const char *  name, bool  cloneImageData = true  )

static

Create a deep copy of a volumeNode and add it to the scene.

CloneVolumeWithoutImageData()

static vtkMRMLScalarVolumeNode* vtkSlicerVolumesLogic::CloneVolumeWithoutImageData ( vtkMRMLScene *  scene, vtkMRMLVolumeNode *  volumeNode, const char *  name  )

static

Create a empty copy of a volumeNode without imageData and add it to the current scene

See also

GetMRMLScene()

CompareVolumeGeometry()

std::string vtkSlicerVolumesLogic::CompareVolumeGeometry	(	vtkMRMLScalarVolumeNode *	volumeNode1,
		vtkMRMLScalarVolumeNode *	volumeNode2
	)

Generate a string listing any warnings about the spatial validity of the second volume with respect to the first volume. An empty string indicates that the two volumes are identical samplings of the same spatial region. Checks include: Valid image data. Same dimensions. Same spacing. Same origin. Same IJKtoRAS.

See also

CheckForLabelVolumeValidity, ResampleVolumeToReferenceVolume

ComputeTkRegVox2RASMatrix()

void vtkSlicerVolumesLogic::ComputeTkRegVox2RASMatrix	(	vtkMRMLVolumeNode *	VNode,
		vtkMatrix4x4 *	M
	)

Convenience method to compute a volume's Vox2RAS-tkreg Matrix.

CreateAndAddLabelVolume() [1/2]

vtkMRMLLabelMapVolumeNode* vtkSlicerVolumesLogic::CreateAndAddLabelVolume	(	vtkMRMLVolumeNode *	volumeNode,
		const char *	name
	)

Create a label map volume to match the given volumeNode and add it to the current scene

See also

GetMRMLScene()

CreateAndAddLabelVolume() [2/2]

vtkMRMLLabelMapVolumeNode* vtkSlicerVolumesLogic::CreateAndAddLabelVolume	(	vtkMRMLScene *	scene,
		vtkMRMLVolumeNode *	volumeNode,
		const char *	name
	)

Create a label map volume to match the given volumeNode and add it to the scene.

CreateLabelVolume() [1/2]

vtkMRMLLabelMapVolumeNode* vtkSlicerVolumesLogic::CreateLabelVolume	(	vtkMRMLVolumeNode *	volumeNode,
		const char *	name
	)

Deprecated:

Create a label map volume to match the given volumeNode and add it to the current scene.

See also

CreateAndAddLabelVolume

CreateLabelVolume() [2/2]

vtkMRMLLabelMapVolumeNode* vtkSlicerVolumesLogic::CreateLabelVolume	(	vtkMRMLScene *	scene,
		vtkMRMLVolumeNode *	volumeNode,
		const char *	name
	)

Deprecated:

Create a label map volume to match the given volumeNode and add it to the scene

See also

CreateAndAddLabelVolume

CreateLabelVolumeFromVolume()

vtkMRMLLabelMapVolumeNode* vtkSlicerVolumesLogic::CreateLabelVolumeFromVolume	(	vtkMRMLScene *	scene,
		vtkMRMLLabelMapVolumeNode *	outputVolume,
		vtkMRMLVolumeNode *	inputVolume
	)

Set a label map volume to match the given input volume node, under the assumption that the given label map node is already added to the scene. A display node will be added to it if the label node doesn't already have one, and the image data associated with the label node will be allocated according to the template volumeNode.

CreateScalarVolumeFromVolume()

vtkMRMLScalarVolumeNode* vtkSlicerVolumesLogic::CreateScalarVolumeFromVolume	(	vtkMRMLScene *	scene,
		vtkMRMLScalarVolumeNode *	outputVolume,
		vtkMRMLVolumeNode *	inputVolume
	)

Set a scalar volume to match the given input volume node, under the assumption that the given label map node is already added to the scene. A display node will be added to it if the label node doesn't already have one, and the image data associated with the label node will be allocated according to the template volumeNode.

FillLabelVolumeFromTemplate() [1/2]

vtkMRMLLabelMapVolumeNode* vtkSlicerVolumesLogic::FillLabelVolumeFromTemplate	(	vtkMRMLLabelMapVolumeNode *	labelNode,
		vtkMRMLVolumeNode *	templateNode
	)

Deprecated:

Fill in a label map volume to match the given template volume node.

See also

FillLabelVolumeFromTemplate(vtkMRMLScene*, vtkMRMLScalarVolumeNode*, vtkMRMLVolumeNode*)

GetMRMLScene()

FillLabelVolumeFromTemplate() [2/2]

vtkMRMLLabelMapVolumeNode* vtkSlicerVolumesLogic::FillLabelVolumeFromTemplate	(	vtkMRMLScene *	scene,
		vtkMRMLLabelMapVolumeNode *	labelNode,
		vtkMRMLVolumeNode *	templateNode
	)

Deprecated:

Fill in a label map volume to match the given template volume node, under the assumption that the given label map node is already added to the scene. A display node will be added to it if the label node doesn't already have one, and the image data associated with the label node will be allocated according to the template volumeNode.

GetAppliedVolumeDisplayPresetId()

std::string vtkSlicerVolumesLogic::GetAppliedVolumeDisplayPresetId

(

vtkMRMLVolumeDisplayNode *

displayNode

)

Get ID of the volume display preset that matches current display settings. Returns empty string if there is no match.

GetClassName()

virtual const char* vtkSlicerVolumesLogic::GetClassName ( )

virtual

Reimplemented from vtkSlicerModuleLogic.

GetCompareVolumeGeometryEpsilon()

virtual double vtkSlicerVolumesLogic::GetCompareVolumeGeometryEpsilon ( )

virtual

Getting the epsilon value to use when determining if the elements of the IJK to RAS matrices of two volumes match. Defaults to 10 to the minus 6.

GetCompareVolumeGeometryPrecision()

virtual int vtkSlicerVolumesLogic::GetCompareVolumeGeometryPrecision ( )

virtual

Get the precision with which to print out volume geometry mismatches, value is set when setting the compare volume geometry epsilon.

See also

SetCompareVolumeGeometryEpsilon

GetVolumeCenteredOrigin()

void vtkSlicerVolumesLogic::GetVolumeCenteredOrigin	(	vtkMRMLVolumeNode *	volumeNode,
		double *	origin
	)

Compute the origin of the volume in order for the volume to be centered.

See also

CenterVolume()

GetVolumeDisplayPreset()

VolumeDisplayPreset vtkSlicerVolumesLogic::GetVolumeDisplayPreset

(

const std::string &

presetId

)

Get volume display preset based on ID. If not found then the returned preset will have Valid member set to false.

GetVolumeDisplayPresetIDs()

std::vector<std::string> vtkSlicerVolumesLogic::GetVolumeDisplayPresetIDs

(

)

Method to get a vector to currently defined window level preset IDs.

InitializeDefaultVolumeDisplayPresets()

void vtkSlicerVolumesLogic::InitializeDefaultVolumeDisplayPresets ( )

protected

Read default volume display presets from configuration file.

InitializeStorageNode()

void vtkSlicerVolumesLogic::InitializeStorageNode ( vtkMRMLStorageNode *  storageNode, const char *  filename, vtkStringArray *  fileList, vtkMRMLScene *  mrmlScene = nullptr  )

protected

IsA()

virtual int vtkSlicerVolumesLogic::IsA ( const char *  type )

virtual

Reimplemented from vtkSlicerModuleLogic.

IsFreeSurferVolume()

int vtkSlicerVolumesLogic::IsFreeSurferVolume

(

const char *

filename

)

Examine the file name to see if the extension is one of the supported freesurfer volume formats. Used to assign the proper color node to label maps.

IsTypeOf()

static int vtkSlicerVolumesLogic::IsTypeOf ( const char *  type )

static

New()

static vtkSlicerVolumesLogic* vtkSlicerVolumesLogic::New ( )

static

operator=()

void vtkSlicerVolumesLogic::operator= ( const vtkSlicerVolumesLogic &  )

protected

PreRegisterArchetypeVolumeNodeSetFactory()

void vtkSlicerVolumesLogic::PreRegisterArchetypeVolumeNodeSetFactory

(

ArchetypeVolumeNodeSetFactory

factory

)

Register a factory method that can create and configure a node set (ArchetypeVolumeNodeSet) containing a volume node, display node, and storage node. The nodes are configured within the factory method with default settings and are added to the scene and cross-referenced appropriately. Node types must be registered with the scene beforehand the factory is called. This version inserts the factory at the head of the list, and hence the factory will be tested first, rather than pushing onto the back of the list of factories.

PrintSelf()

void vtkSlicerVolumesLogic::PrintSelf ( ostream &  os, vtkIndent  indent  )

override

ProcessMRMLNodesEvents()

void vtkSlicerVolumesLogic::ProcessMRMLNodesEvents ( vtkObject *  caller, unsigned long  event, void *  callData  )

overrideprotectedvirtual

Receives all the events fired by the nodes. To listen to a node, you can add an observer using GetMRMLNodesCallbackCommand() or use the utility macros vtk[SetAndObserve|Observe]MRMLNode[Event]Macro ProcessMRMLNodesEvents calls OnMRMLNodeModified when event is vtkCommand::ModifiedEvent.

See also

ProcessMRMLSceneEvents, ProcessMRMLLogicsEvents, OnMRMLNodeModified(), vtkSetAndObserveMRMLNodeMacro, vtkObserveMRMLNodeMacro, vtkSetAndObserveMRMLNodeEventMacro

Reimplemented from vtkMRMLAbstractLogic.

RegisterArchetypeVolumeNodeSetFactory()

void vtkSlicerVolumesLogic::RegisterArchetypeVolumeNodeSetFactory

(

ArchetypeVolumeNodeSetFactory

factory

)

Register a factory method that can create and configure a node set (ArchetypeVolumeNodeSet) containing a volume node, display node, and storage node. The nodes are configured within the factory method with default settings and are added to the scene and cross-referenced appropriately. Node types must be registered with the scene beforehand the factory is called. Factories are tested in the order they are registered.

ResampleVolumeToReferenceVolume()

static vtkMRMLScalarVolumeNode* vtkSlicerVolumesLogic::ResampleVolumeToReferenceVolume ( vtkMRMLVolumeNode *  inputVolumeNode, vtkMRMLVolumeNode *  referenceVolumeNode  )

static

Convenience method to resample input volume using reference volume info

See also

CompareVolumeGeometry

SafeDownCast()

static vtkSlicerVolumesLogic* vtkSlicerVolumesLogic::SafeDownCast ( vtkObject *  o )

static

SaveArchetypeVolume()

int vtkSlicerVolumesLogic::SaveArchetypeVolume	(	const char *	filename,
		vtkMRMLVolumeNode *	volumeNode
	)

Write volume's image data to a specified file.

SetAndObserveColorToDisplayNode()

void vtkSlicerVolumesLogic::SetAndObserveColorToDisplayNode ( vtkMRMLDisplayNode *  displayNode, int  labelmap, const char *  filename  )

protected

SetCompareVolumeGeometryEpsilon()

void vtkSlicerVolumesLogic::SetCompareVolumeGeometryEpsilon

(

double

epsilon

)

Setting the epsilon value and associated precision to use when determining if the elements of the IJK to RAS matrices of two volumes match and how to print out the mismatched elements.

TranslateFreeSurferRegistrationMatrixIntoSlicerRASToRASMatrix()

void vtkSlicerVolumesLogic::TranslateFreeSurferRegistrationMatrixIntoSlicerRASToRASMatrix	(	vtkMRMLVolumeNode *	V1Node,
		vtkMRMLVolumeNode *	V2Node,
		vtkMatrix4x4 *	FSRegistrationMatrix,
		vtkMatrix4x4 *	ResultsMatrix
	)

Computes matrix we need to register V1Node to V2Node given the "register.dat" matrix from tkregister2 (FreeSurfer)

Member Data Documentation

CompareVolumeGeometryEpsilon

double vtkSlicerVolumesLogic::CompareVolumeGeometryEpsilon

protected

Allowable difference in comparing volume geometry double values. Defaults to 1 to the power of 10 to the minus 6

Definition at line 347 of file vtkSlicerVolumesLogic.h.

CompareVolumeGeometryPrecision

int vtkSlicerVolumesLogic::CompareVolumeGeometryPrecision

protected

Error print out precision, paried with CompareVolumeGeometryEpsilon. defaults to 6

Definition at line 351 of file vtkSlicerVolumesLogic.h.

VolumeDisplayPresets

std::vector<VolumeDisplayPreset> vtkSlicerVolumesLogic::VolumeDisplayPresets

Definition at line 84 of file vtkSlicerVolumesLogic.h.

VolumeRegistry

NodeSetFactoryRegistry vtkSlicerVolumesLogic::VolumeRegistry

protected

Definition at line 343 of file vtkSlicerVolumesLogic.h.

---

The documentation for this class was generated from the following file:

• Modules/Loadable/Volumes/Logic/vtkSlicerVolumesLogic.h