MRML node for transform storage on disk. More...

#include <Libs/MRML/Core/vtkMRMLTransformStorageNode.h>

Inheritance diagram for vtkMRMLTransformStorageNode:

Collaboration diagram for vtkMRMLTransformStorageNode:

[legend]

Public Types
typedef vtkMRMLStorageNode	Superclass

Public Types inherited from vtkMRMLStorageNode
enum	{ Idle, Pending, Scheduled, Transferring, TransferDone, Cancelled, SkippedNoData }

enum	{ CoordinateSystemRAS = 0, RAS = 0, CoordinateSystemLPS = 1, LPS = 1, CoordinateSystemType_Last }

typedef vtkMRMLNode	Superclass

Public Types inherited from vtkMRMLNode
enum	{ HierarchyModifiedEvent = 16000, IDChangedEvent = 16001, ReferenceAddedEvent, ReferenceModifiedEvent, ReferenceRemovedEvent, ReferencedNodeModifiedEvent }

typedef vtkObject	Superclass

Public Member Functions
bool	CanReadInReferenceNode (vtkMRMLNode *refNode) override
	Support only transform nodes. More...

void	Copy (vtkMRMLNode *node) override
	Copy the node's attributes to this object More...

vtkMRMLNode *	CreateNodeInstance () override
	Create instance of the default node. Like New only virtual. More...

virtual const char *	GetClassName ()

const char *	GetNodeTagName () override
	Get node XML tag name (like Storage, Transform) More...

virtual int	GetPreferITKv3CompatibleTransforms ()

void	InitializeSupportedWriteFileTypes () override
	Initialize all the supported write file types More...

virtual int	IsA (const char *type)

virtual void	PreferITKv3CompatibleTransformsOff ()

virtual void	PreferITKv3CompatibleTransformsOn ()

void	PrintSelf (ostream &os, vtkIndent indent) override

void	ReadXMLAttributes (const char **atts) override
	Set node attributes More...

virtual void	SetPreferITKv3CompatibleTransforms (int)

void	WriteXML (ostream &of, int indent) override
	Write this node's information to a MRML file in XML format. More...

Public Member Functions inherited from vtkMRMLStorageNode
unsigned int	AddFileName (const char *fileName)
	Add in another file name to the list of file names More...

unsigned int	AddURI (const char *uri)
	Add in another URI to the list of URI's More...

virtual bool	CanWriteFromReferenceNode (vtkMRMLNode *refNode)

virtual void	ConfigureForDataExchange ()

int	FileNameIsInList (const char *fileName)

const char *	GetAbsoluteFilePath (const char *inputPath)

virtual std::string	GetCompressionParameter ()

virtual std::string	GetCompressionParameterFromDisplayName (const std::string &name)
	Returns a string representing the specified preset. More...

virtual std::vector< std::string >	GetCompressionPresetDisplayNames ()
	Returns a list of displayable names of the supported compression presets. More...

virtual const std::vector< CompressionPreset >	GetCompressionPresets ()
	Get a list of all supported compression presets. More...

virtual const char *	GetDefaultWriteFileExtension ()
	Return default file extension for writing. More...

virtual std::string	GetDisplayNameFromCompressionParameter (const std::string &preset)
	Returns the name of the specified preset. More...

virtual void	GetFileExtensionsFromFileTypes (vtkStringArray inputFileTypes, vtkStringArray outputFileExtensions)

virtual char *	GetFileName ()

std::string	GetFileNameWithoutExtension (const char *fileName=nullptr)

std::string	GetFullNameFromFileName ()

std::string	GetFullNameFromNthFileName (int n)

const char *	GetNthFileName (int n) const
	return the nth file name, null if doesn't exist More...

const char *	GetNthURI (int n)
	Get the nth URI from the list of URI's More...

virtual int	GetNumberOfCompressionPresets ()
	Get the number of compression presets. More...

int	GetNumberOfFileNames () const
	See how many file names were generated during ExecuteInformation More...

int	GetNumberOfURIs ()
	Return how many uri names this storage node holds in it's list More...

virtual int	GetReadState ()
	Get/Set the state of reading. More...

const char *	GetReadStateAsString ()

const char *	GetStateAsString (int state)

virtual vtkMRMLStorableNode *	GetStorableNode ()

vtkTimeStamp	GetStoredTime ()

virtual std::string	GetSupportedFileExtension (const char *fileName=nullptr, bool includeReadable=true, bool includeWriteable=true)

virtual vtkStringArray *	GetSupportedReadFileTypes ()

virtual vtkStringArray *	GetSupportedWriteFileTypes ()

virtual char *	GetTempFileName ()

virtual char *	GetURI ()

virtual vtkURIHandler *	GetURIHandler ()

virtual int	GetUseCompression ()

const vtkMRMLMessageCollection *	GetUserMessages () const

vtkMRMLMessageCollection *	GetUserMessages ()

virtual char *	GetWriteFileFormat ()

virtual int	GetWriteState ()
	Get/Set the state of writing More...

const char *	GetWriteStateAsString ()

void	InvalidateFile ()

int	IsFilePathRelative (const char *filepath)

void	PrintSelf (ostream &os, vtkIndent indent) override

void	ProcessMRMLEvents (vtkObject caller, unsigned long event, void callData) override
	Propagate Progress Event generated in ReadData More...

virtual int	ReadData (vtkMRMLNode *refNode, bool temporaryFile=false)

void	ResetFileNameList ()
	Clear the array of file names More...

void	ResetNthFileName (int n, const char *fileName)
	Set the nth file in FileNameList, checks that it is already defined More...

void	ResetNthURI (int n, const char *uri)
	Set the nth uri in URIList, checks that it is already defined More...

void	ResetURIList ()
	Clear the array of URIs More...

virtual void	SetCompressionParameter (std::string)
	Compression parameter that is used to save the node. More...

void	SetDataDirectory (const char *dataDirName)
	Set a new data directory for all files More...

virtual void	SetDefaultWriteFileExtension (const char *ext)

virtual void	SetFileName (const char *)

virtual void	SetReadState (int)

void	SetReadStateCancelled ()

void	SetReadStateIdle ()

void	SetReadStatePending ()

void	SetReadStateScheduled ()

void	SetReadStateSkippedNoData ()

void	SetReadStateTransferDone ()

void	SetReadStateTransferring ()

virtual void	SetTempFileName (const char *)
	A temporary file name used to calculate absolute paths More...

virtual void	SetURI (const char *)
	Location of the remote copy of this file. More...

virtual void	SetURIHandler (vtkURIHandler *uriHandler)

void	SetURIPrefix (const char *uriPrefix)
	Set a new URI base for all URI's More...

virtual void	SetUseCompression (int)

virtual void	SetWriteFileFormat (const char *)
	Allow to set specific file format that this node will write output. More...

virtual void	SetWriteState (int)

void	SetWriteStateCancelled ()

void	SetWriteStateIdle ()

void	SetWriteStatePending ()

void	SetWriteStateScheduled ()

void	SetWriteStateSkippedNoData ()

void	SetWriteStateTransferDone ()

void	SetWriteStateTransferring ()

virtual int	SupportedFileType (const char *fileName)

virtual void	UseCompressionOff ()

virtual void	UseCompressionOn ()
	Use compression on write More...

virtual int	WriteData (vtkMRMLNode *refNode)

Public Member Functions inherited from vtkMRMLNode
vtkMRMLNode *	AddAndObserveNodeReferenceID (const char referenceRole, const char referencedNodeID, vtkIntArray *events=nullptr)
	Add and observe a reference node from this node for a specific referenceRole. More...

vtkMRMLNode *	AddNodeReferenceID (const char referenceRole, const char referencedNodeID)
	Convenience method that adds a referencedNodeID at the end of the list. More...

void	AddNodeReferenceRole (const char referenceRole, const char mrmlAttributeName=nullptr, vtkIntArray *events=nullptr)
	Add a referenceRole. More...

virtual void	AddToSceneOff ()

virtual void	AddToSceneOn ()

virtual void	CopyContent (vtkMRMLNode *node, bool deepCopy=true)
	Copy node contents from another node of the same type. Does not copy node ID, Scene, Name, SingletonTag, HideFromEditors, AddToScene, UndoEnabled, and node references. If deepCopy is set to false then a shallow copy of bulk data (such as image or mesh data) could be made; copying may be faster but the node may share some data with the source node instead of creating an independent copy. More...

virtual void	CopyReferences (vtkMRMLNode *node)
	Copy the references of the node into this. More...

void	CopyWithScene (vtkMRMLNode *node)
	Copy everything (including Scene and ID) from another node of the same type. More...

void	DisableModifiedEventOff ()

void	DisableModifiedEventOn ()

virtual int	EndModify (int previousDisableModifiedEventState)
	End modifying the node. More...

virtual int	GetAddToScene ()
	node added to MRML scene. More...

const char *	GetAttribute (const char *name)
	Get value of a name value pair attribute. More...

std::vector< std::string >	GetAttributeNames ()
	Get all attribute names. More...

void	GetAttributeNames (vtkStringArray *attributeNames)
	Get all attribute names. Python-wrappable version. More...

virtual vtkIntArray *	GetContentModifiedEvents ()

int	GetCustomModifiedEventPending (int eventId)

virtual char *	GetDescription ()

virtual int	GetDisableModifiedEvent ()
	Turn on/off generating InvokeEvent for set macros. More...

virtual int	GetHideFromEditors ()
	Describes if the node is hidden. More...

virtual char *	GetID ()
	ID use by other nodes to reference this node in XML. More...

virtual int	GetInMRMLCallbackFlag ()
	Flags to avoid event loops. More...

virtual int	GetModifiedEventPending ()

virtual char *	GetName ()

vtkMRMLNode *	GetNodeReference (const char *referenceRole)

const char *	GetNodeReferenceID (const char *referenceRole)
	Utility function that returns the first node id for a specific referenceRole. More...

void	GetNodeReferenceIDs (const char referenceRole, std::vector< const char > &referencedNodeIDs)
	Return a list of the referenced node IDs. More...

void	GetNodeReferenceRoles (std::vector< std::string > &roles)

void	GetNodeReferences (const char referenceRole, std::vector< vtkMRMLNode > &nodes)
	Return a list of the referenced nodes. More...

vtkMRMLNode *	GetNthNodeReference (const char *referenceRole, int n)
	Get referenced MRML node for a specific referenceRole. More...

const char *	GetNthNodeReferenceID (const char *referenceRole, int n)
	Return the string of the Nth node ID for a specific reference role. More...

const char *	GetNthNodeReferenceRole (int n)

int	GetNumberOfNodeReferenceRoles ()

int	GetNumberOfNodeReferences (const char *referenceRole)
	Return the number of node IDs for a specific reference role (and nodes as they always have the same size). More...

virtual int	GetSaveWithScene ()
	Save node with MRML scene. More...

virtual vtkMRMLScene *	GetScene ()
	Get the scene this node has been added to. More...

virtual int	GetSelectable ()
	Describes if the node is selectable. More...

virtual int	GetSelected ()
	Get/Set for Selected. More...

virtual char *	GetSingletonTag ()

virtual const char *	GetTypeDisplayName ()

virtual bool	GetUndoEnabled ()

virtual bool	HasCopyContent () const
	Returns true if the class supports deep and shallow copying node content. More...

bool	HasNodeReferenceID (const char referenceRole, const char referencedNodeID)
	Return true if referencedNodeID is in the node ID list for a specific referenceRole. More...

virtual void	HideFromEditorsOff ()

virtual void	HideFromEditorsOn ()

virtual void	InvokeCustomModifiedEvent (int eventId, void *callData=nullptr)
	This method allows the node to compress events. More...

virtual int	InvokePendingModifiedEvent ()
	Invokes any modified events that are `pending`. More...

bool	IsSingleton ()

void	Modified () override
	Customized version of Modified() allowing to compress vtkCommand::ModifiedEvent. More...

virtual void	OnNodeAddedToScene ()

void	PrintSelf (ostream &os, vtkIndent indent) override

virtual void	ProcessChildNode (vtkMRMLNode *)
	Set dependencies between this node and a child node when parsing XML file. More...

void	RemoveAttribute (const char *name)
	Remove attribute with the specified name. More...

void	RemoveNodeReferenceIDs (const char *referenceRole)
	Remove all node IDs and associated nodes for a specific referenceRole. More...

void	RemoveNthNodeReferenceID (const char *referenceRole, int n)
	Convenience method that removes the Nth node ID from the list. More...

virtual void	Reset (vtkMRMLNode *defaultNode)
	Reset node attributes to the initial state as defined in the constructor or the passed default node. More...

virtual void	SaveWithSceneOff ()

virtual void	SaveWithSceneOn ()

virtual void	SelectableOff ()

virtual void	SelectableOn ()

virtual void	SelectedOff ()

virtual void	SelectedOn ()

virtual void	SetAddToScene (int)

void	SetAddToSceneNoModify (int value)

vtkMRMLNode *	SetAndObserveNodeReferenceID (const char referenceRole, const char referencedNodeID, vtkIntArray *events=nullptr)
	Set and observe a reference node from this node for a specific referenceRole. More...

vtkMRMLNode *	SetAndObserveNthNodeReferenceID (const char referenceRole, int n, const char referencedNodeID, vtkIntArray *events=nullptr)
	Set and observe the Nth node ID for a specific reference role. More...

void	SetAttribute (const char name, const char value)
	Set a name value pair attribute. More...

virtual void	SetDescription (const char *)
	Text description of this node, to be set by the user. More...

void	SetDisableModifiedEvent (int onOff)

virtual void	SetHideFromEditors (int)

void	SetInMRMLCallbackFlag (int flag)

virtual void	SetName (const char *)
	Name of this node, to be set by the user. More...

vtkMRMLNode *	SetNodeReferenceID (const char referenceRole, const char referencedNodeID)
	Set a reference to a node with specified nodeID from this node for a specific referenceRole. More...

vtkMRMLNode *	SetNthNodeReferenceID (const char referenceRole, int n, const char referencedNodeID)
	Set a N-th reference from this node with specified referencedNodeID for a specific referenceRole. More...

virtual void	SetSaveWithScene (int)

virtual void	SetScene (vtkMRMLScene *scene)
	This method is for internal use only. Use AddNode method of vtkMRMLScene to add a node to the scene. More...

virtual void	SetSceneReferences ()
	Update the references of the node to the scene. More...

virtual void	SetSelectable (int)

virtual void	SetSelected (int)

void	SetSingletonOff ()

void	SetSingletonOn ()

virtual void	SetSingletonTag (const char *)
	Tag that make this node a singleton in the scene. More...

virtual void	SetUndoEnabled (bool)

virtual int	StartModify ()
	Start modifying the node. Disable Modify events. More...

virtual void	UndoEnabledOff ()

virtual void	UndoEnabledOn ()

virtual void	UpdateReferenceID (const char oldID, const char newID)
	Update the stored reference to another node in the scene. More...

virtual void	UpdateReferences ()
	The method should remove all pointers and observations to all nodes that are not in the scene anymore. More...

virtual void	UpdateScene (vtkMRMLScene *)

const char *	URLDecodeString (const char *inString)
	Decode a URL string. More...

const char *	URLEncodeString (const char *inString)
	Encode a URL string. More...

virtual void	WriteNodeBodyXML (ostream &of, int indent)
	Write this node's body to a MRML file in XML format. More...

std::string	XMLAttributeDecodeString (const std::string &inString)
	Decode an XML attribute string. More...

std::string	XMLAttributeEncodeString (const std::string &inString)
	Encode an XML attribute string (replaces special characters by code sequences) More...

Static Public Member Functions
static int	IsTypeOf (const char *type)

static vtkMRMLTransformStorageNode *	New ()

static vtkMRMLTransformStorageNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLStorageNode
static const char *	GetCoordinateSystemTypeAsString (int id)
	Convert between coordinate system ID and name More...

static int	GetCoordinateSystemTypeFromString (const char *name)

static std::string	GetLowercaseExtensionFromFileName (const std::string &filename)

static int	IsTypeOf (const char *type)

static vtkMRMLStorageNode *	SafeDownCast (vtkObject *o)

Static Public Member Functions inherited from vtkMRMLNode
static int	IsTypeOf (const char *type)

static vtkMRMLNode *	SafeDownCast (vtkObject *o)

Protected Member Functions
virtual bool	IsImageFile (const std::string &filename)

void	operator= (const vtkMRMLTransformStorageNode &)

int	ReadDataInternal (vtkMRMLNode *refNode) override
	Read data and set it in the referenced node. More...

virtual int	ReadFromImageFile (vtkMRMLNode *refNode)

virtual int	ReadFromITKv3BSplineTransformFile (vtkMRMLNode *refNode)

virtual int	ReadFromTransformFile (vtkMRMLNode *refNode)

virtual void	SetAndObserveTransformFromParentAutoInvert (vtkMRMLTransformNode transformNode, vtkAbstractTransform transform)

	vtkMRMLTransformStorageNode ()

	vtkMRMLTransformStorageNode (const vtkMRMLTransformStorageNode &)

int	WriteDataInternal (vtkMRMLNode *refNode) override
	Write data from a referenced node. More...

virtual int	WriteToImageFile (vtkMRMLNode *refNode)

virtual int	WriteToTransformFile (vtkMRMLNode *refNode)

	~vtkMRMLTransformStorageNode () override

Protected Member Functions inherited from vtkMRMLStorageNode
virtual void	InitializeSupportedReadFileTypes ()

void	operator= (const vtkMRMLStorageNode &)

void	StageReadData (vtkMRMLNode *refNode)

void	StageWriteData (vtkMRMLNode *refNode)

virtual void	UpdateCompressionPresets ()

	vtkMRMLStorageNode ()

	vtkMRMLStorageNode (const vtkMRMLStorageNode &)

	~vtkMRMLStorageNode () override

Protected Member Functions inherited from vtkMRMLNode
virtual const char *	GetMRMLAttributeNameFromReferenceRole (const char *refRole)
	Return the mrml attribute name (if found) associated with a reference role. Return 0 otherwise. More...

virtual const char *	GetReferenceRoleFromMRMLAttributeName (const char *attName)
	Return the reference role (if found) associated with the attribute name found in a MRML scene file. Return 0 otherwise. More...

virtual char *	GetTempURLString ()

void	GetUpdatedReferencedNodeEventList (int &oldReferencedNodeUseCount, int &newReferencedNodeUseCount, vtkIntArray oldConsolidatedEventList, vtkIntArray newConsolidatedEventList, vtkMRMLNode oldReferencedNode, vtkMRMLNode newReferencedNode, vtkMRMLNodeReference referenceToIgnore, vtkIntArray newEvents)

virtual void	InvalidateNodeReferences ()

virtual bool	IsReferenceRoleGeneric (const char *refRole)
	Return true if the reference role is generic (ends with '/') or false otherwise. More...

virtual void	OnNodeReferenceAdded (vtkMRMLNodeReference *reference)

virtual void	OnNodeReferenceModified (vtkMRMLNodeReference *reference)
	Called when a referenced node pointer is modified. More...

virtual void	OnNodeReferenceRemoved (vtkMRMLNodeReference *reference)
	Called when a referenced node pointer is removed (set to nullptr). More...

void	operator= (const vtkMRMLNode &)

void	ParseReferencesAttribute (const char *attValue, std::set< std::string > &references)

void	RemoveInvalidReferences (const std::set< std::string > &validNodeIDs)

virtual void	SetTempURLString (const char *)
	Get/Set the string used to manage encoding/decoding of strings/URLs with special characters. More...

vtkMRMLNode *	UpdateNodeReferenceEventObserver (vtkMRMLNode oldReferencedNode, vtkMRMLNode newReferencedNode, vtkIntArray newEvents, vtkMRMLNodeReference referenceToIgnore)

virtual void	UpdateNodeReferences (const char *referenceRole=nullptr)

virtual void	UpdateNthNodeReference (const char *referenceRole, int n)

	vtkMRMLNode ()

	vtkMRMLNode (const vtkMRMLNode &)

	~vtkMRMLNode () override
	critical to have a virtual destructor! More...

Protected Attributes
int	PreferITKv3CompatibleTransforms

Protected Attributes inherited from vtkMRMLStorageNode
std::string	CompressionParameter

std::vector< CompressionPreset >	CompressionPresets

std::string	DefaultWriteFileExtension
	List of supported extensions to write in. More...

char *	FileName

std::vector< std::string >	FileNameList
	An array of file names, should contain the FileName but may not More...

vtkWeakPointer< vtkMRMLStorableNode >	LastFoundStorableNode

int	ReadState

vtkTimeStamp *	StoredTime

vtkStringArray *	SupportedReadFileTypes
	List of supported extensions to read in. More...

vtkStringArray *	SupportedWriteFileTypes

char *	TempFileName

char *	URI

vtkURIHandler *	URIHandler

std::vector< std::string >	URIList
	An array of URI's, should contain the URI but may not More...

int	UseCompression

vtkMRMLMessageCollection *	UserMessages

char *	WriteFileFormat

int	WriteState

Protected Attributes inherited from vtkMRMLNode
int	AddToScene {1}

AttributesType	Attributes

vtkIntArray *	ContentModifiedEvents

char *	Description {nullptr}

int	HideFromEditors {0}

char *	ID {nullptr}

int	InMRMLCallbackFlag {0}
	Flag to avoid event loops More...

vtkCallbackCommand *	MRMLCallbackCommand
	Holders for MRML callbacks. More...

vtkObserverManager *	MRMLObserverManager

char *	Name {nullptr}

NodeReferenceEventsType	NodeReferenceEvents

std::map< std::string, std::string >	NodeReferenceMRMLAttributeNames

NodeReferencesType	NodeReferences

int	SaveWithScene {true}

vtkWeakPointer< vtkMRMLScene >	Scene

int	Selectable {1}

int	Selected {0}

bool	UndoEnabled {false}

Static Protected Attributes
static bool	RegisterInverseTransformTypesCompleted
	Flag to prevent repeated registration of ITK transforms. More...

Additional Inherited Members
Protected Types inherited from vtkMRMLNode
typedef std::map< std::string, std::string >	AttributesType

typedef std::map< std::string, vtkSmartPointer< vtkIntArray > >	NodeReferenceEventsType

typedef std::vector< vtkSmartPointer< vtkMRMLNodeReference > >	NodeReferenceListType

typedef std::map< std::string, NodeReferenceListType >	NodeReferencesType

Static Protected Member Functions inherited from vtkMRMLNode
static void	MRMLCallback (vtkObject caller, unsigned long eid, void clientData, void *callData)

Detailed Description

MRML node for transform storage on disk.

Storage nodes has methods to read/write transforms to/from disk.

Definition at line 26 of file vtkMRMLTransformStorageNode.h.

Member Typedef Documentation

◆ Superclass

typedef vtkMRMLStorageNode vtkMRMLTransformStorageNode::Superclass

Definition at line 30 of file vtkMRMLTransformStorageNode.h.

Constructor & Destructor Documentation

◆ vtkMRMLTransformStorageNode() [1/2]

vtkMRMLTransformStorageNode::vtkMRMLTransformStorageNode ( )

protected

◆ ~vtkMRMLTransformStorageNode()

vtkMRMLTransformStorageNode::~vtkMRMLTransformStorageNode ( )

overrideprotected

◆ vtkMRMLTransformStorageNode() [2/2]

vtkMRMLTransformStorageNode::vtkMRMLTransformStorageNode ( const vtkMRMLTransformStorageNode & )

protected

Member Function Documentation

◆ CanReadInReferenceNode()

bool vtkMRMLTransformStorageNode::CanReadInReferenceNode ( vtkMRMLNode * refNode )

overridevirtual

Support only transform nodes.

Implements vtkMRMLStorageNode.

◆ Copy()

void vtkMRMLTransformStorageNode::Copy ( vtkMRMLNode * node )

overridevirtual

Copy the node's attributes to this object

Reimplemented from vtkMRMLStorageNode.

◆ CreateNodeInstance()

vtkMRMLNode* vtkMRMLTransformStorageNode::CreateNodeInstance ( )

overridevirtual

Create instance of the default node. Like New only virtual.

Note: Subclasses should implement this method

Implements vtkMRMLStorageNode.

◆ GetClassName()

virtual const char* vtkMRMLTransformStorageNode::GetClassName ( )

virtual

Reimplemented from vtkMRMLStorageNode.

◆ GetNodeTagName()

const char* vtkMRMLTransformStorageNode::GetNodeTagName ( )

inlineoverridevirtual

Get node XML tag name (like Storage, Transform)

Implements vtkMRMLStorageNode.

Definition at line 45 of file vtkMRMLTransformStorageNode.h.

◆ GetPreferITKv3CompatibleTransforms()

virtual int vtkMRMLTransformStorageNode::GetPreferITKv3CompatibleTransforms ( )

virtual

If true then BSpline transforms will be written as deprecated but ITKv3-compatible itk::BSplineDeformableTransform (instead of current itk::BSplineTransform). If a transform cannot be written to ITKv3 format, then this flag is ignored and the transform is written in ITKv4 format.

◆ InitializeSupportedWriteFileTypes()

void vtkMRMLTransformStorageNode::InitializeSupportedWriteFileTypes ( )

overridevirtual

Initialize all the supported write file types

Reimplemented from vtkMRMLStorageNode.

◆ IsA()

virtual int vtkMRMLTransformStorageNode::IsA ( const char * type )

virtual

Reimplemented from vtkMRMLStorageNode.

◆ IsImageFile()

virtual bool vtkMRMLTransformStorageNode::IsImageFile ( const std::string & filename )

protectedvirtual

Returns true if the filename indicates that it is an image file (then it is assumed to be a grid transform and the displacement field is read/written with an image reader/writer class)

◆ IsTypeOf()

static int vtkMRMLTransformStorageNode::IsTypeOf ( const char * type )

static

◆ New()

static vtkMRMLTransformStorageNode* vtkMRMLTransformStorageNode::New ( )

static

◆ operator=()

void vtkMRMLTransformStorageNode::operator= ( const vtkMRMLTransformStorageNode & )

protected

◆ PreferITKv3CompatibleTransformsOff()

virtual void vtkMRMLTransformStorageNode::PreferITKv3CompatibleTransformsOff ( )

virtual

◆ PreferITKv3CompatibleTransformsOn()

virtual void vtkMRMLTransformStorageNode::PreferITKv3CompatibleTransformsOn ( )

virtual

◆ PrintSelf()

void vtkMRMLTransformStorageNode::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

override

◆ ReadDataInternal()

int vtkMRMLTransformStorageNode::ReadDataInternal ( vtkMRMLNode * refNode )

overrideprotectedvirtual

Read data and set it in the referenced node.

Reimplemented from vtkMRMLStorageNode.

◆ ReadFromImageFile()

virtual int vtkMRMLTransformStorageNode::ReadFromImageFile ( vtkMRMLNode * refNode )

protectedvirtual

Read displacement field transform from a 3-component scalar image. The 3 scalar components in the file specify the displacement in LPS coordinate system. When the transform is read into Slicer, the displacement vectors are converted to RAS coordinate system.

◆ ReadFromITKv3BSplineTransformFile()

virtual int vtkMRMLTransformStorageNode::ReadFromITKv3BSplineTransformFile ( vtkMRMLNode * refNode )

protectedvirtual

This method is specialized for ITKv3 tfm files as generated by legacy versions of BRAINSFit (see slicer issue #3788). This generates the vtkOrientedBSplineTransform with an additive bulk transform (as in ITKv3 bspline transform).

◆ ReadFromTransformFile()

virtual int vtkMRMLTransformStorageNode::ReadFromTransformFile ( vtkMRMLNode * refNode )

protectedvirtual

This method uses ITK's transform reading infrastucture to read simple or composite transforms. The composite transform can contain nested transforms in any order coming in theory from any file type and it is read into a vtkGeneralTransform. In practice, as of Slicer 4.4, only HDF5 (.h5) files can support composite transforms and the only composite transform in general use is one which includes a linear component and a bspline component. (see slicer issue #3788).

◆ ReadXMLAttributes()

void vtkMRMLTransformStorageNode::ReadXMLAttributes ( const char ** atts )

overridevirtual

Set node attributes

Reimplemented from vtkMRMLStorageNode.

◆ SafeDownCast()

static vtkMRMLTransformStorageNode* vtkMRMLTransformStorageNode::SafeDownCast ( vtkObject * o )

static

◆ SetAndObserveTransformFromParentAutoInvert()

virtual void vtkMRMLTransformStorageNode::SetAndObserveTransformFromParentAutoInvert	(	vtkMRMLTransformNode *	transformNode,
		vtkAbstractTransform *	transform
	)

protectedvirtual

The method calls SetAndObserveTransformFromParent or SetAndObserveTransformToParent, depending on which one will result in storing a transform that is not inverted (Inverse flag is false). For example, if it the transform's Inverse flag is false then it is saved by using SetAndObserveTransformFromParent as is; if transform's Inverse flag is true, then the transform is inverted (so that its Inverse flag becomes false) and the resulting transform is saved in SetAndObserveTransformToParent. It makes the displayed transform information more intuitive.

◆ SetPreferITKv3CompatibleTransforms()

virtual void vtkMRMLTransformStorageNode::SetPreferITKv3CompatibleTransforms ( int )

virtual

◆ WriteDataInternal()

int vtkMRMLTransformStorageNode::WriteDataInternal ( vtkMRMLNode * refNode )

overrideprotectedvirtual

Write data from a referenced node.

Reimplemented from vtkMRMLStorageNode.

◆ WriteToImageFile()

virtual int vtkMRMLTransformStorageNode::WriteToImageFile ( vtkMRMLNode * refNode )

protectedvirtual

Write displacement field transform from a 3-component scalar image. The 3 scalar components in Slicer specify the displacement in RAS coordinate system. When the transform is written to file then the displacement vectors are converted to LPS coordinate system.

◆ WriteToTransformFile()

virtual int vtkMRMLTransformStorageNode::WriteToTransformFile ( vtkMRMLNode * refNode )

protectedvirtual

Writes simple or composite transform to an ITK transform file. Supports writing of legacy ITKv3 BSpline transform with additive bulk component.

◆ WriteXML()

void vtkMRMLTransformStorageNode::WriteXML	(	ostream &	of,
		int	indent
	)

overridevirtual

Write this node's information to a MRML file in XML format.

Reimplemented from vtkMRMLStorageNode.

Member Data Documentation

◆ PreferITKv3CompatibleTransforms

int vtkMRMLTransformStorageNode::PreferITKv3CompatibleTransforms

protected

Definition at line 129 of file vtkMRMLTransformStorageNode.h.

◆ RegisterInverseTransformTypesCompleted

bool vtkMRMLTransformStorageNode::RegisterInverseTransformTypesCompleted

staticprotected

Flag to prevent repeated registration of ITK transforms.

Definition at line 125 of file vtkMRMLTransformStorageNode.h.

The documentation for this class was generated from the following file:

Libs/MRML/Core/vtkMRMLTransformStorageNode.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Static Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ Superclass

Constructor & Destructor Documentation

◆ vtkMRMLTransformStorageNode() [1/2]

◆ ~vtkMRMLTransformStorageNode()

◆ vtkMRMLTransformStorageNode() [2/2]

Member Function Documentation

◆ CanReadInReferenceNode()

◆ Copy()

◆ CreateNodeInstance()

◆ GetClassName()

◆ GetNodeTagName()

◆ GetPreferITKv3CompatibleTransforms()

◆ InitializeSupportedWriteFileTypes()

◆ IsA()

◆ IsImageFile()

◆ IsTypeOf()

◆ New()

◆ operator=()

◆ PreferITKv3CompatibleTransformsOff()

◆ PreferITKv3CompatibleTransformsOn()

◆ PrintSelf()

◆ ReadDataInternal()

◆ ReadFromImageFile()

◆ ReadFromITKv3BSplineTransformFile()

◆ ReadFromTransformFile()

◆ ReadXMLAttributes()

◆ SafeDownCast()

◆ SetAndObserveTransformFromParentAutoInvert()

◆ SetPreferITKv3CompatibleTransforms()

◆ WriteDataInternal()

◆ WriteToImageFile()

◆ WriteToTransformFile()

◆ WriteXML()

Member Data Documentation

◆ PreferITKv3CompatibleTransforms

◆ RegisterInverseTransformTypesCompleted