vtkSlicerSegmentationGeometryLogic Class Reference

#include <Modules/Loadable/Segmentations/Logic/vtkSlicerSegmentationGeometryLogic.h>

Inheritance diagram for vtkSlicerSegmentationGeometryLogic:

Collaboration diagram for vtkSlicerSegmentationGeometryLogic:

Public Types
typedef vtkObject	Superclass

Public Member Functions
std::string	CalculateOutputGeometry ()
void	ComputeSourceAxisIndexForInputAxis ()
virtual const char *	GetClassName ()
virtual int *	GetInputAxisIndexForSourceAxis ()
	Source to input axes mapping. More...
virtual void	GetInputAxisIndexForSourceAxis (int data[3])
virtual vtkOrientedImageData *	GetOutputGeometryImageData ()
	Oriented image data containing output geometry. This is what the class calculates from the inputs. More...
virtual int *	GetSourceAxisIndexForInputAxis ()
	Source to input axes mapping. More...
virtual void	GetSourceAxisIndexForInputAxis (int data[3])
virtual vtkMRMLDisplayableNode *	GetSourceGeometryNode ()
	MRML node specifying the source geometry. More...
bool	InputSegmentationCanBeResampled ()
	Determine if input segmentation is non-empty, and with binary labelmap master. More...
virtual int	IsA (const char *type)
bool	IsSourceSegmentationWithBinaryLabelmapMaster ()
	Determine if source node is a non-empty segmentation with a labelmap master. More...
void	PrintSelf (ostream &os, vtkIndent indent) override
bool	ResampleLabelmapsInSegmentationNode ()
void	ResetGeometryImageData ()
	Reset geometry image data. More...
virtual void	SetSourceGeometryNode (vtkMRMLDisplayableNode *node)
virtual vtkMRMLSegmentationNode *	GetInputSegmentationNode ()
	Input segmentation MRML node to modify the labelmap geometry of. More...
virtual void	SetInputSegmentationNode (vtkMRMLSegmentationNode *)
virtual bool	GetIsotropicSpacing ()
virtual void	SetIsotropicSpacing (bool)
virtual void	IsotropicSpacingOn ()
virtual void	IsotropicSpacingOff ()
virtual double	GetOversamplingFactor ()
virtual void	SetOversamplingFactor (double)
virtual double *	GetUserSpacing ()
virtual void	GetUserSpacing (double data[3])
virtual void	SetUserSpacing (double data[])
virtual bool	GetPadOutputGeometry ()
virtual void	SetPadOutputGeometry (bool)
virtual void	PadOutputGeometryOn ()
virtual void	PadOutputGeometryOff ()

Static Public Member Functions
static int	IsTypeOf (const char *type)
static vtkSlicerSegmentationGeometryLogic *	New ()
static vtkSlicerSegmentationGeometryLogic *	SafeDownCast (vtkObject *o)

Protected Member Functions
std::string	CalculateOutputGeometryFromBounds (bool keepCurrentAxisDirections)
std::string	CalculateOutputGeometryFromImage ()
void	CalculatePaddedOutputGeometry ()
	vtkSlicerSegmentationGeometryLogic ()
	~vtkSlicerSegmentationGeometryLogic () override

Protected Attributes
int	InputAxisIndexForSourceAxis [3] { 0, 1, 2 }
vtkMRMLSegmentationNode *	InputSegmentationNode { nullptr }
bool	IsotropicSpacing { false }
vtkOrientedImageData *	OutputGeometryImageData { nullptr }
double	OversamplingFactor { 1.0 }
bool	PadOutputGeometry { true }
int	SourceAxisIndexForInputAxis [3] { 0, 1, 2 }
vtkMRMLDisplayableNode *	SourceGeometryNode { nullptr }
double	UserSpacing [3] { 1.0, 1.0, 1.0 }

Detailed Description

Definition at line 40 of file vtkSlicerSegmentationGeometryLogic.h.

Member Typedef Documentation

Superclass

typedef vtkObject vtkSlicerSegmentationGeometryLogic::Superclass

Definition at line 44 of file vtkSlicerSegmentationGeometryLogic.h.

Constructor & Destructor Documentation

vtkSlicerSegmentationGeometryLogic()

vtkSlicerSegmentationGeometryLogic::vtkSlicerSegmentationGeometryLogic ( )

protected

~vtkSlicerSegmentationGeometryLogic()

vtkSlicerSegmentationGeometryLogic::~vtkSlicerSegmentationGeometryLogic ( )

overrideprotected

Member Function Documentation

CalculateOutputGeometry()

std::string vtkSlicerSegmentationGeometryLogic::CalculateOutputGeometry

(

)

Calculate output geometry into

See also

GeometryImageData with current options

Returns

Error message. Empty when successful

CalculateOutputGeometryFromBounds()

std::string vtkSlicerSegmentationGeometryLogic::CalculateOutputGeometryFromBounds ( bool  keepCurrentAxisDirections )

protected

Calculate output geometry into

See also

GeometryImageData with current options from node bounds. If keepCurrentAxisDirections is true then the current axes directions will be preserved, otherwise the source axes directions are used.

Returns

Error message. Empty when successful

CalculateOutputGeometryFromImage()

std::string vtkSlicerSegmentationGeometryLogic::CalculateOutputGeometryFromImage ( )

protected

Calculate output geometry into

See also

GeometryImageData with current options from image or segmentation that uses labelmap as master representation.

Returns

Error message. Empty when successful

CalculatePaddedOutputGeometry()

void vtkSlicerSegmentationGeometryLogic::CalculatePaddedOutputGeometry ( )

protected

ComputeSourceAxisIndexForInputAxis()

void vtkSlicerSegmentationGeometryLogic::ComputeSourceAxisIndexForInputAxis

(

)

Match the axes of the input labelmap to the axes of the transformed source node. Use this calculated permutation for updating spacing widget from geometry and interpreting spacing input

GetClassName()

virtual const char* vtkSlicerSegmentationGeometryLogic::GetClassName ( )

virtual

GetInputAxisIndexForSourceAxis() [1/2]

virtual int* vtkSlicerSegmentationGeometryLogic::GetInputAxisIndexForSourceAxis ( )

virtual

Source to input axes mapping.

See also

matchInputAndSourceAxes

GetInputAxisIndexForSourceAxis() [2/2]

virtual void vtkSlicerSegmentationGeometryLogic::GetInputAxisIndexForSourceAxis ( int  data[3] )

virtual

GetInputSegmentationNode()

virtual vtkMRMLSegmentationNode* vtkSlicerSegmentationGeometryLogic::GetInputSegmentationNode ( )

virtual

Input segmentation MRML node to modify the labelmap geometry of.

GetIsotropicSpacing()

virtual bool vtkSlicerSegmentationGeometryLogic::GetIsotropicSpacing ( )

virtual

Flag indicating whether isotropic spacing is requested. Off by default Resample the volume to have isotropic spacing, which means the voxels will be cubes. Use smallest spacing. Useful if the volume has elongated voxels.

GetOutputGeometryImageData()

virtual vtkOrientedImageData* vtkSlicerSegmentationGeometryLogic::GetOutputGeometryImageData ( )

virtual

Oriented image data containing output geometry. This is what the class calculates from the inputs.

GetOversamplingFactor()

virtual double vtkSlicerSegmentationGeometryLogic::GetOversamplingFactor ( )

virtual

Oversampling factor: Split each voxel of the volume to this many voxels along each direction. Useful when increasing the resolution is needed 1 by default.

GetPadOutputGeometry()

virtual bool vtkSlicerSegmentationGeometryLogic::GetPadOutputGeometry ( )

virtual

If enabled then the output geometry extent is padded as needed to ensure that the input segmentation extent fits into the output. Enabled by default.

GetSourceAxisIndexForInputAxis() [1/2]

virtual int* vtkSlicerSegmentationGeometryLogic::GetSourceAxisIndexForInputAxis ( )

virtual

Source to input axes mapping.

See also

matchInputAndSourceAxes

GetSourceAxisIndexForInputAxis() [2/2]

virtual void vtkSlicerSegmentationGeometryLogic::GetSourceAxisIndexForInputAxis ( int  data[3] )

virtual

GetSourceGeometryNode()

virtual vtkMRMLDisplayableNode* vtkSlicerSegmentationGeometryLogic::GetSourceGeometryNode ( )

virtual

MRML node specifying the source geometry.

GetUserSpacing() [1/2]

virtual double* vtkSlicerSegmentationGeometryLogic::GetUserSpacing ( )

virtual

Explicitly specified spacing. Only applied if

See also

SourceGeometryNode does not contain volume data (i.e. not a volume node nor a segmentation node with labelmap master, but an ROI, model, or segmentation with poly data master)

GetUserSpacing() [2/2]

virtual void vtkSlicerSegmentationGeometryLogic::GetUserSpacing ( double  data[3] )

virtual

InputSegmentationCanBeResampled()

bool vtkSlicerSegmentationGeometryLogic::InputSegmentationCanBeResampled

(

)

Determine if input segmentation is non-empty, and with binary labelmap master.

IsA()

virtual int vtkSlicerSegmentationGeometryLogic::IsA ( const char *  type )

virtual

IsotropicSpacingOff()

virtual void vtkSlicerSegmentationGeometryLogic::IsotropicSpacingOff ( )

virtual

IsotropicSpacingOn()

virtual void vtkSlicerSegmentationGeometryLogic::IsotropicSpacingOn ( )

virtual

IsSourceSegmentationWithBinaryLabelmapMaster()

bool vtkSlicerSegmentationGeometryLogic::IsSourceSegmentationWithBinaryLabelmapMaster

(

)

Determine if source node is a non-empty segmentation with a labelmap master.

IsTypeOf()

static int vtkSlicerSegmentationGeometryLogic::IsTypeOf ( const char *  type )

static

New()

static vtkSlicerSegmentationGeometryLogic* vtkSlicerSegmentationGeometryLogic::New ( )

static

PadOutputGeometryOff()

virtual void vtkSlicerSegmentationGeometryLogic::PadOutputGeometryOff ( )

virtual

PadOutputGeometryOn()

virtual void vtkSlicerSegmentationGeometryLogic::PadOutputGeometryOn ( )

virtual

PrintSelf()

void vtkSlicerSegmentationGeometryLogic::PrintSelf ( ostream &  os, vtkIndent  indent  )

override

ResampleLabelmapsInSegmentationNode()

bool vtkSlicerSegmentationGeometryLogic::ResampleLabelmapsInSegmentationNode

(

)

Resample labelmap representation the input segmentation node according to the current output geometry setting.

ResetGeometryImageData()

void vtkSlicerSegmentationGeometryLogic::ResetGeometryImageData

(

)

Reset geometry image data.

See also

GeometryImageData

SafeDownCast()

static vtkSlicerSegmentationGeometryLogic* vtkSlicerSegmentationGeometryLogic::SafeDownCast ( vtkObject *  o )

static

SetInputSegmentationNode()

virtual void vtkSlicerSegmentationGeometryLogic::SetInputSegmentationNode ( vtkMRMLSegmentationNode *  )

virtual

SetIsotropicSpacing()

virtual void vtkSlicerSegmentationGeometryLogic::SetIsotropicSpacing ( bool  )

virtual

SetOversamplingFactor()

virtual void vtkSlicerSegmentationGeometryLogic::SetOversamplingFactor ( double  )

virtual

SetPadOutputGeometry()

virtual void vtkSlicerSegmentationGeometryLogic::SetPadOutputGeometry ( bool  )

virtual

SetSourceGeometryNode()

virtual void vtkSlicerSegmentationGeometryLogic::SetSourceGeometryNode ( vtkMRMLDisplayableNode *  node )

virtual

SetUserSpacing()

virtual void vtkSlicerSegmentationGeometryLogic::SetUserSpacing ( double  data[] )

virtual

Member Data Documentation

InputAxisIndexForSourceAxis

int vtkSlicerSegmentationGeometryLogic::InputAxisIndexForSourceAxis[3] { 0, 1, 2 }

protected

Definition at line 145 of file vtkSlicerSegmentationGeometryLogic.h.

InputSegmentationNode

vtkMRMLSegmentationNode* vtkSlicerSegmentationGeometryLogic::InputSegmentationNode { nullptr }

protected

Definition at line 138 of file vtkSlicerSegmentationGeometryLogic.h.

IsotropicSpacing

bool vtkSlicerSegmentationGeometryLogic::IsotropicSpacing { false }

protected

Definition at line 140 of file vtkSlicerSegmentationGeometryLogic.h.

OutputGeometryImageData

vtkOrientedImageData* vtkSlicerSegmentationGeometryLogic::OutputGeometryImageData { nullptr }

protected

Definition at line 144 of file vtkSlicerSegmentationGeometryLogic.h.

OversamplingFactor

double vtkSlicerSegmentationGeometryLogic::OversamplingFactor { 1.0 }

protected

Definition at line 141 of file vtkSlicerSegmentationGeometryLogic.h.

PadOutputGeometry

bool vtkSlicerSegmentationGeometryLogic::PadOutputGeometry { true }

protected

Definition at line 142 of file vtkSlicerSegmentationGeometryLogic.h.

SourceAxisIndexForInputAxis

int vtkSlicerSegmentationGeometryLogic::SourceAxisIndexForInputAxis[3] { 0, 1, 2 }

protected

Definition at line 146 of file vtkSlicerSegmentationGeometryLogic.h.

SourceGeometryNode

vtkMRMLDisplayableNode* vtkSlicerSegmentationGeometryLogic::SourceGeometryNode { nullptr }

protected

Definition at line 139 of file vtkSlicerSegmentationGeometryLogic.h.

UserSpacing

double vtkSlicerSegmentationGeometryLogic::UserSpacing[3] { 1.0, 1.0, 1.0 }

protected

Definition at line 143 of file vtkSlicerSegmentationGeometryLogic.h.

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The documentation for this class was generated from the following file:

• Modules/Loadable/Segmentations/Logic/vtkSlicerSegmentationGeometryLogic.h