#include <Modules/Loadable/Segmentations/Logic/vtkSlicerSegmentationGeometryLogic.h>

Inheritance diagram for vtkSlicerSegmentationGeometryLogic:

Collaboration diagram for vtkSlicerSegmentationGeometryLogic:

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Public Types
typedef vtkObject	Superclass

Public Member Functions
std::string	CalculateOutputGeometry ()

void	ComputeSourceAxisIndexForInputAxis ()

virtual const char *	GetClassName ()

virtual int *	GetInputAxisIndexForSourceAxis ()
	Source to input axes mapping.

virtual void	GetInputAxisIndexForSourceAxis (int data[3])

virtual vtkMRMLSegmentationNode *	GetInputSegmentationNode ()
	Input segmentation MRML node to modify the labelmap geometry of.

virtual bool	GetIsotropicSpacing ()

virtual vtkOrientedImageData *	GetOutputGeometryImageData ()
	Oriented image data containing output geometry. This is what the class calculates from the inputs.

virtual double	GetOversamplingFactor ()

virtual bool	GetPadOutputGeometry ()

virtual int *	GetSourceAxisIndexForInputAxis ()
	Source to input axes mapping.

virtual void	GetSourceAxisIndexForInputAxis (int data[3])

virtual vtkMRMLDisplayableNode *	GetSourceGeometryNode ()
	MRML node specifying the source geometry.

virtual double *	GetUserSpacing ()

virtual void	GetUserSpacing (double data[3])

bool	InputSegmentationCanBeResampled ()
	Determine if input segmentation is non-empty, and with binary labelmap master.

virtual int	IsA (const char *type)

virtual void	IsotropicSpacingOff ()

virtual void	IsotropicSpacingOn ()

bool	IsSourceSegmentationWithBinaryLabelmapMaster ()
	Determine if source node is a non-empty segmentation with a labelmap master.

virtual void	PadOutputGeometryOff ()

virtual void	PadOutputGeometryOn ()

void	PrintSelf (ostream &os, vtkIndent indent) override

bool	ResampleLabelmapsInSegmentationNode ()

void	ResetGeometryImageData ()
	Reset geometry image data.

virtual void	SetInputSegmentationNode (vtkMRMLSegmentationNode *)

virtual void	SetIsotropicSpacing (bool)

virtual void	SetOversamplingFactor (double)

virtual void	SetPadOutputGeometry (bool)

bool	SetReferenceImageGeometryInSegmentationNode ()

virtual void	SetSourceGeometryNode (vtkMRMLDisplayableNode *node)

virtual void	SetUserSpacing (double data[])

Static Public Member Functions
static int	IsTypeOf (const char *type)

static vtkSlicerSegmentationGeometryLogic *	New ()

static vtkSlicerSegmentationGeometryLogic *	SafeDownCast (vtkObject *o)

Protected Member Functions
std::string	CalculateOutputGeometryFromBounds (bool keepCurrentAxisDirections)

std::string	CalculateOutputGeometryFromImage ()

void	CalculatePaddedOutputGeometry ()

	vtkSlicerSegmentationGeometryLogic ()

	~vtkSlicerSegmentationGeometryLogic () override

Protected Attributes
int	InputAxisIndexForSourceAxis [3] { 0, 1, 2 }

vtkMRMLSegmentationNode *	InputSegmentationNode { nullptr }

bool	IsotropicSpacing { false }

vtkOrientedImageData *	OutputGeometryImageData { nullptr }

double	OversamplingFactor { 1.0 }

bool	PadOutputGeometry { true }

int	SourceAxisIndexForInputAxis [3] { 0, 1, 2 }

vtkMRMLDisplayableNode *	SourceGeometryNode { nullptr }

double	UserSpacing [3] { 1.0, 1.0, 1.0 }

Detailed Description

Definition at line 39 of file vtkSlicerSegmentationGeometryLogic.h.

Member Typedef Documentation

◆ Superclass

typedef vtkObject vtkSlicerSegmentationGeometryLogic::Superclass

Definition at line 43 of file vtkSlicerSegmentationGeometryLogic.h.

Constructor & Destructor Documentation

◆ vtkSlicerSegmentationGeometryLogic()

vtkSlicerSegmentationGeometryLogic::vtkSlicerSegmentationGeometryLogic ( )

protected

◆ ~vtkSlicerSegmentationGeometryLogic()

vtkSlicerSegmentationGeometryLogic::~vtkSlicerSegmentationGeometryLogic ( )

overrideprotected

Member Function Documentation

◆ CalculateOutputGeometry()

std::string vtkSlicerSegmentationGeometryLogic::CalculateOutputGeometry ( )

Calculate output geometry into

See also: GeometryImageData with current options

Returns: Error message. Empty when successful

◆ CalculateOutputGeometryFromBounds()

std::string vtkSlicerSegmentationGeometryLogic::CalculateOutputGeometryFromBounds ( bool keepCurrentAxisDirections )

protected

Calculate output geometry into

See also: GeometryImageData with current options from node bounds. If keepCurrentAxisDirections is true then the current axes directions will be preserved, otherwise the source axes directions are used.

Returns: Error message. Empty when successful

◆ CalculateOutputGeometryFromImage()

std::string vtkSlicerSegmentationGeometryLogic::CalculateOutputGeometryFromImage ( )

protected

Calculate output geometry into

See also: GeometryImageData with current options from image or segmentation that uses labelmap as source representation.

Returns: Error message. Empty when successful

◆ CalculatePaddedOutputGeometry()

void vtkSlicerSegmentationGeometryLogic::CalculatePaddedOutputGeometry ( )

protected

◆ ComputeSourceAxisIndexForInputAxis()

void vtkSlicerSegmentationGeometryLogic::ComputeSourceAxisIndexForInputAxis ( )

Match the axes of the input labelmap to the axes of the transformed source node. Use this calculated permutation for updating spacing widget from geometry and interpreting spacing input

◆ GetClassName()

virtual const char * vtkSlicerSegmentationGeometryLogic::GetClassName ( )

virtual

◆ GetInputAxisIndexForSourceAxis() [1/2]

virtual int * vtkSlicerSegmentationGeometryLogic::GetInputAxisIndexForSourceAxis ( )

virtual

Source to input axes mapping.

See also: matchInputAndSourceAxes

◆ GetInputAxisIndexForSourceAxis() [2/2]

virtual void vtkSlicerSegmentationGeometryLogic::GetInputAxisIndexForSourceAxis ( int data[3] )

virtual

◆ GetInputSegmentationNode()

virtual vtkMRMLSegmentationNode * vtkSlicerSegmentationGeometryLogic::GetInputSegmentationNode ( )

virtual

Input segmentation MRML node to modify the labelmap geometry of.

◆ GetIsotropicSpacing()

virtual bool vtkSlicerSegmentationGeometryLogic::GetIsotropicSpacing ( )

virtual

Flag indicating whether isotropic spacing is requested. Off by default Resample the volume to have isotropic spacing, which means the voxels will be cubes. Use smallest spacing. Useful if the volume has elongated voxels.

◆ GetOutputGeometryImageData()

virtual vtkOrientedImageData * vtkSlicerSegmentationGeometryLogic::GetOutputGeometryImageData ( )

virtual

Oriented image data containing output geometry. This is what the class calculates from the inputs.

◆ GetOversamplingFactor()

virtual double vtkSlicerSegmentationGeometryLogic::GetOversamplingFactor ( )

virtual

Oversampling factor: Split each voxel of the volume to this many voxels along each direction. Useful when increasing the resolution is needed 1 by default.

◆ GetPadOutputGeometry()

virtual bool vtkSlicerSegmentationGeometryLogic::GetPadOutputGeometry ( )

virtual

If enabled then the output geometry extent is padded as needed to ensure that the input segmentation extent fits into the output. Enabled by default.

◆ GetSourceAxisIndexForInputAxis() [1/2]

virtual int * vtkSlicerSegmentationGeometryLogic::GetSourceAxisIndexForInputAxis ( )

virtual

Source to input axes mapping.

See also: matchInputAndSourceAxes

◆ GetSourceAxisIndexForInputAxis() [2/2]

virtual void vtkSlicerSegmentationGeometryLogic::GetSourceAxisIndexForInputAxis ( int data[3] )

virtual

◆ GetSourceGeometryNode()

virtual vtkMRMLDisplayableNode * vtkSlicerSegmentationGeometryLogic::GetSourceGeometryNode ( )

virtual

MRML node specifying the source geometry.

◆ GetUserSpacing() [1/2]

virtual double * vtkSlicerSegmentationGeometryLogic::GetUserSpacing ( )

virtual

Explicitly specified spacing. Only applied if

See also: SourceGeometryNode does not contain volume data (i.e. not a volume node nor a segmentation node with labelmap master, but an ROI, model, or segmentation with poly data master)

◆ GetUserSpacing() [2/2]

virtual void vtkSlicerSegmentationGeometryLogic::GetUserSpacing ( double data[3] )

virtual

◆ InputSegmentationCanBeResampled()

bool vtkSlicerSegmentationGeometryLogic::InputSegmentationCanBeResampled ( )

Determine if input segmentation is non-empty, and with binary labelmap master.

◆ IsA()

virtual int vtkSlicerSegmentationGeometryLogic::IsA ( const char * type )

virtual

◆ IsotropicSpacingOff()

virtual void vtkSlicerSegmentationGeometryLogic::IsotropicSpacingOff ( )

virtual

◆ IsotropicSpacingOn()

virtual void vtkSlicerSegmentationGeometryLogic::IsotropicSpacingOn ( )

virtual

◆ IsSourceSegmentationWithBinaryLabelmapMaster()

bool vtkSlicerSegmentationGeometryLogic::IsSourceSegmentationWithBinaryLabelmapMaster ( )

Determine if source node is a non-empty segmentation with a labelmap master.

◆ IsTypeOf()

static int vtkSlicerSegmentationGeometryLogic::IsTypeOf ( const char * type )

static

◆ New()

static vtkSlicerSegmentationGeometryLogic * vtkSlicerSegmentationGeometryLogic::New ( )

static

◆ PadOutputGeometryOff()

virtual void vtkSlicerSegmentationGeometryLogic::PadOutputGeometryOff ( )

virtual

◆ PadOutputGeometryOn()

virtual void vtkSlicerSegmentationGeometryLogic::PadOutputGeometryOn ( )

virtual

◆ PrintSelf()

void vtkSlicerSegmentationGeometryLogic::PrintSelf	(	ostream &	os,
		vtkIndent	indent )

override

◆ ResampleLabelmapsInSegmentationNode()

bool vtkSlicerSegmentationGeometryLogic::ResampleLabelmapsInSegmentationNode ( )

Resample labelmap representation of the input segmentation node according to the current output geometry setting.

See also: SetReferenceImageGeometryInSegmentationNode()

◆ ResetGeometryImageData()

void vtkSlicerSegmentationGeometryLogic::ResetGeometryImageData ( )

Reset geometry image data.

See also: GeometryImageData

◆ SafeDownCast()

static vtkSlicerSegmentationGeometryLogic * vtkSlicerSegmentationGeometryLogic::SafeDownCast ( vtkObject * o )

static

◆ SetInputSegmentationNode()

virtual void vtkSlicerSegmentationGeometryLogic::SetInputSegmentationNode ( vtkMRMLSegmentationNode * )

virtual

◆ SetIsotropicSpacing()

virtual void vtkSlicerSegmentationGeometryLogic::SetIsotropicSpacing ( bool )

virtual

◆ SetOversamplingFactor()

virtual void vtkSlicerSegmentationGeometryLogic::SetOversamplingFactor ( double )

virtual

◆ SetPadOutputGeometry()

virtual void vtkSlicerSegmentationGeometryLogic::SetPadOutputGeometry ( bool )

virtual

◆ SetReferenceImageGeometryInSegmentationNode()

bool vtkSlicerSegmentationGeometryLogic::SetReferenceImageGeometryInSegmentationNode ( )

Sets the computed reference image geometry into the input segmentation node (in the ReferenceImageGeometry conversion parameter and node reference). For example, reference geometry may be used for determining the geometry of the segmentation when saving into file, to make the extents of the segmentation match the extents of the segmented image (instead of making the segmentation just big enough to store all the segments).

◆ SetSourceGeometryNode()

virtual void vtkSlicerSegmentationGeometryLogic::SetSourceGeometryNode ( vtkMRMLDisplayableNode * node )

virtual

◆ SetUserSpacing()

virtual void vtkSlicerSegmentationGeometryLogic::SetUserSpacing ( double data[] )

virtual

Member Data Documentation

◆ InputAxisIndexForSourceAxis

int vtkSlicerSegmentationGeometryLogic::InputAxisIndexForSourceAxis[3] { 0, 1, 2 }

protected

Definition at line 153 of file vtkSlicerSegmentationGeometryLogic.h.

◆ InputSegmentationNode

vtkMRMLSegmentationNode* vtkSlicerSegmentationGeometryLogic::InputSegmentationNode { nullptr }

protected

Definition at line 146 of file vtkSlicerSegmentationGeometryLogic.h.

◆ IsotropicSpacing

bool vtkSlicerSegmentationGeometryLogic::IsotropicSpacing { false }

protected

Definition at line 148 of file vtkSlicerSegmentationGeometryLogic.h.

◆ OutputGeometryImageData

vtkOrientedImageData* vtkSlicerSegmentationGeometryLogic::OutputGeometryImageData { nullptr }

protected

Definition at line 152 of file vtkSlicerSegmentationGeometryLogic.h.

◆ OversamplingFactor

double vtkSlicerSegmentationGeometryLogic::OversamplingFactor { 1.0 }

protected

Definition at line 149 of file vtkSlicerSegmentationGeometryLogic.h.

◆ PadOutputGeometry

bool vtkSlicerSegmentationGeometryLogic::PadOutputGeometry { true }

protected

Definition at line 150 of file vtkSlicerSegmentationGeometryLogic.h.

◆ SourceAxisIndexForInputAxis

int vtkSlicerSegmentationGeometryLogic::SourceAxisIndexForInputAxis[3] { 0, 1, 2 }

protected

Definition at line 154 of file vtkSlicerSegmentationGeometryLogic.h.

◆ SourceGeometryNode

vtkMRMLDisplayableNode* vtkSlicerSegmentationGeometryLogic::SourceGeometryNode { nullptr }

protected

Definition at line 147 of file vtkSlicerSegmentationGeometryLogic.h.

◆ UserSpacing

double vtkSlicerSegmentationGeometryLogic::UserSpacing[3] { 1.0, 1.0, 1.0 }

protected

Definition at line 151 of file vtkSlicerSegmentationGeometryLogic.h.

The documentation for this class was generated from the following file:

Modules/Loadable/Segmentations/Logic/vtkSlicerSegmentationGeometryLogic.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Member Typedef Documentation

◆ Superclass

Constructor & Destructor Documentation

◆ vtkSlicerSegmentationGeometryLogic()

◆ ~vtkSlicerSegmentationGeometryLogic()

Member Function Documentation

◆ CalculateOutputGeometry()

◆ CalculateOutputGeometryFromBounds()

◆ CalculateOutputGeometryFromImage()

◆ CalculatePaddedOutputGeometry()

◆ ComputeSourceAxisIndexForInputAxis()

◆ GetClassName()

◆ GetInputAxisIndexForSourceAxis() [1/2]

◆ GetInputAxisIndexForSourceAxis() [2/2]

◆ GetInputSegmentationNode()

◆ GetIsotropicSpacing()

◆ GetOutputGeometryImageData()

◆ GetOversamplingFactor()

◆ GetPadOutputGeometry()

◆ GetSourceAxisIndexForInputAxis() [1/2]

◆ GetSourceAxisIndexForInputAxis() [2/2]

◆ GetSourceGeometryNode()

◆ GetUserSpacing() [1/2]

◆ GetUserSpacing() [2/2]

◆ InputSegmentationCanBeResampled()

◆ IsA()

◆ IsotropicSpacingOff()

◆ IsotropicSpacingOn()

◆ IsSourceSegmentationWithBinaryLabelmapMaster()

◆ IsTypeOf()

◆ New()

◆ PadOutputGeometryOff()

◆ PadOutputGeometryOn()

◆ PrintSelf()

◆ ResampleLabelmapsInSegmentationNode()

◆ ResetGeometryImageData()

◆ SafeDownCast()

◆ SetInputSegmentationNode()

◆ SetIsotropicSpacing()

◆ SetOversamplingFactor()

◆ SetPadOutputGeometry()

◆ SetReferenceImageGeometryInSegmentationNode()

◆ SetSourceGeometryNode()

◆ SetUserSpacing()

Member Data Documentation

◆ InputAxisIndexForSourceAxis

◆ InputSegmentationNode

◆ IsotropicSpacing

◆ OutputGeometryImageData

◆ OversamplingFactor

◆ PadOutputGeometry

◆ SourceAxisIndexForInputAxis

◆ SourceGeometryNode

◆ UserSpacing