Slicer 5.8
Slicer is a multi-platform, free and open source software package for visualization and medical image computing
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vtkMRMLSliceNode.h
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1/*=auto=========================================================================
2
3 Portions (c) Copyright 2005 Brigham and Women's Hospital (BWH) All Rights Reserved.
4
5 See COPYRIGHT.txt
6 or http://www.slicer.org/copyright/copyright.txt for details.
7
8 Program: 3D Slicer
9 Module: $RCSfile: vtkMRMLSliceNode.h,v $
10 Date: $Date: 2006/03/19 17:12:29 $
11 Version: $Revision: 1.3 $
12
13=========================================================================auto=*/
14
15#ifndef __vtkMRMLSliceNode_h
16#define __vtkMRMLSliceNode_h
17
18// MRML includes
21
22// VTK includes
23class vtkImplicitFunction;
24class vtkMatrix3x3;
25class vtkMatrix4x4;
26class vtkPlane;
27
34class VTK_MRML_EXPORT vtkMRMLSliceNode : public vtkMRMLAbstractViewNode
35{
36 public:
45 void PrintSelf(ostream& os, vtkIndent indent) override;
46
48
51 void ReadXMLAttributes( const char** atts) override;
52
55 void WriteXML(ostream& of, int indent) override;
56
60
64 void Reset(vtkMRMLNode* defaultNode) override;
65
68 const char* GetNodeTagName() override {return "Slice";};
69
76 virtual vtkMatrix4x4 *GetSliceToRAS();
77
80 vtkGetMacro(SliceVisible, int);
81 vtkSetMacro(SliceVisible, int);
82
85 vtkGetMacro(SliceEdgeVisibility3D, bool);
86 vtkSetMacro(SliceEdgeVisibility3D, bool);
87 vtkBooleanMacro(SliceEdgeVisibility3D, bool);
88
91 vtkGetMacro(WidgetVisible, int);
92 vtkSetMacro(WidgetVisible, int);
93
96 vtkGetMacro(WidgetOutlineVisible, int);
97 vtkSetMacro(WidgetOutlineVisible, int);
98
101 void AddThreeDViewID(const char* viewNodeID);
104 void RemoveThreeDViewID(char* viewNodeID);
115 const char* GetNthThreeDViewID(unsigned int index);
119 inline std::vector< std::string > GetThreeDViewIDs()const;
123 bool IsThreeDViewIDPresent(const char* ThreeDViewID)const;
128 bool IsDisplayableInThreeDView(const char* viewNodeID)const;
129
132 vtkGetMacro(WidgetNormalLockedToCamera, int);
133 vtkSetMacro(WidgetNormalLockedToCamera, int);
134
137 vtkGetMacro(UseLabelOutline, int);
138 vtkSetMacro(UseLabelOutline, int);
139 vtkBooleanMacro(UseLabelOutline, int);
140
150
154
161 std::string GetOrientation();
162
164 std::string GetOrientation(vtkMatrix4x4* sliceToRAS);
165
176 bool SetOrientation(const char* orientation);
177
182 vtkSetStringMacro(DefaultOrientation);
183 vtkGetStringMacro(DefaultOrientation);
184
188 virtual const char* GetOrientationString();
189
190protected:
191
196 vtkGetStringMacro(OrientationReference);
197 vtkSetStringMacro(OrientationReference);
198
199public:
200
202 vtkMatrix3x3 *GetSliceOrientationPreset(const std::string& name);
203
208 std::string GetSliceOrientationPresetName(vtkMatrix3x3* orientationMatrix);
209
211 void GetSliceOrientationPresetNames(vtkStringArray* presetOrientationNames);
212
216
221 bool AddSliceOrientationPreset(const std::string& name, vtkMatrix3x3* orientationMatrix);
222
226 bool RemoveSliceOrientationPreset(const std::string& name);
227
231 bool RenameSliceOrientationPreset(const std::string& name, const std::string& updatedName);
232
236 bool HasSliceOrientationPreset(const std::string& name);
237
240 static const char* GetReformatOrientationName() { return "Reformat"; }
241
245 static void GetAxialSliceToRASMatrix(vtkMatrix3x3* orientationMatrix, bool patientRightIsScreenLeft=true);
246
250 static void GetSagittalSliceToRASMatrix(vtkMatrix3x3* orientationMatrix, bool patientRightIsScreenLeft=true);
251
255 static void GetCoronalSliceToRASMatrix(vtkMatrix3x3* orientationMatrix, bool patientRightIsScreenLeft=true);
256
262 static void AddDefaultSliceOrientationPresets(vtkMRMLScene* scene, bool patientRightIsScreenLeft=true);
263
266 vtkGetVector3Macro(FieldOfView, double);
267 void SetFieldOfView(double x, double y, double z);
268 void SetFieldOfView(double xyz[3]) { SetFieldOfView(xyz[0], xyz[1], xyz[2]); }
269
272 vtkGetVector3Macro(XYZOrigin, double);
273 void SetXYZOrigin(double x, double y, double z);
274 void SetXYZOrigin(double xyz[3]) { SetXYZOrigin(xyz[0], xyz[1], xyz[2]); }
275
276
280 vtkGetVectorMacro(Dimensions,int,3);
281 void SetDimensions(int x, int y, int z);
282 void SetDimensions(int xyz[3]) { SetDimensions(xyz[0], xyz[1], xyz[2]); }
283
291 vtkGetVectorMacro(UVWDimensions,int,3);
292 void SetUVWDimensions(int x, int y, int z);
293 void SetUVWDimensions(int xyz[3]);
294
297 vtkGetVectorMacro(UVWMaximumDimensions,int,3);
298 void SetUVWMaximumDimensions(int x, int y, int z);
299 void SetUVWMaximumDimensions(int xyz[3]);
300
303 vtkGetVector3Macro(UVWExtents, double);
304 void SetUVWExtents(double x, double y, double z);
305 void SetUVWExtents(double xyz[3]);
306
309 vtkGetVector3Macro(UVWOrigin, double);
310 void SetUVWOrigin(double x, double y, double z);
311 void SetUVWOrigin(double xyz[3]);
312
315 void SetSliceOrigin(double xyz[3]);
316 void SetSliceOrigin(double x, double y, double z);
317
321 void SetUVWExtentsAndDimensions (double extents[3], int dimensions[3]);
322
323
327 vtkMatrix4x4 *GetXYToSlice();
328
332 vtkMatrix4x4 *GetXYToRAS();
333
337 vtkMatrix4x4 *GetUVWToSlice();
338
342 vtkMatrix4x4 *GetUVWToRAS();
343
346 bool MatrixAreEqual(const vtkMatrix4x4 *m1, const vtkMatrix4x4 *m2);
347
348 bool MatrixAreEqual(const vtkMatrix4x4 *matrix,
349 const vtkMatrix3x3 *orientationMatrix);
354
358 void SetLayoutGrid( int rows, int columns );
359
362 vtkGetMacro(LayoutGridRows, int);
363 virtual void SetLayoutGridRows(int rows);
364
367 vtkGetMacro(LayoutGridColumns, int);
368 virtual void SetLayoutGridColumns(int cols);
369
376 void SetSliceToRASByNTP(double Nx, double Ny, double Nz,
377 double Tx, double Ty, double Tz,
378 double Px, double Py, double Pz,
379 int Orientation);
380
384 void JumpSlice(double r, double a, double s);
385 void JumpAllSlices(double r, double a, double s);
392 static void JumpAllSlices(vtkMRMLScene* scene, double r, double a, double s,
393 int jumpMode = vtkMRMLSliceNode::DefaultJumpSlice, int viewGroup = -1, vtkMRMLSliceNode* exclude = nullptr);
394 void JumpSliceByOffsetting(double r, double a, double s);
395 void JumpSliceByOffsetting(int k, double r, double a, double s);
396 void JumpSliceByCentering(double r, double a, double s);
397
399 enum {DefaultJumpSlice=-1, CenteredJumpSlice=0, OffsetJumpSlice};
400
406 vtkSetMacro(JumpMode, int);
407 vtkGetMacro(JumpMode, int);
410
413 enum {AutomaticSliceSpacingMode=0, PrescribedSliceSpacingMode};
414
418 vtkGetMacro(SliceSpacingMode, int);
419 vtkSetMacro(SliceSpacingMode, int);
422
426 vtkSetVector3Macro(PrescribedSliceSpacing, double);
427 vtkGetVector3Macro(PrescribedSliceSpacing, double);
428
432 void SetSliceOffset(double offset);
433
436 vtkSetMacro(ActiveSlice, int);
437 vtkGetMacro(ActiveSlice, int);
438
446 void RotateToVolumePlane(vtkMRMLVolumeNode *volumeNode, bool forceSlicePlaneToSingleSlice=true);
447
455 void RotateToAxes(vtkMatrix4x4 *referenceToRAS, int sliceNormalAxisIndex=-1);
456
462 void SetInteracting(int);
463 vtkGetMacro(Interacting, int);
464 vtkBooleanMacro(Interacting, int);
465
483 {
484 None = 0,
485 SliceToRASFlag = 1,
486 FieldOfViewFlag = 2, // broadcast a specific field of view setting
487 OrientationFlag = 4,
488 ResetFieldOfViewFlag = 8, // broadcast a reset to all viewers
489 MultiplanarReformatFlag = 16, // broadcast reformat widget transformation
490 XYZOriginFlag = 32,
491 LabelOutlineFlag = 64,
492 SliceVisibleFlag = 128,
493 SliceEdgeVisibility3DFlag = 256,
494 SliceSpacingFlag = 512,
495 ResetOrientationFlag = 1024,
496 RotateToBackgroundVolumePlaneFlag = 2048,
497 UpdateSlabReconstructionThicknessFlag = 4096,
498 };
499
505 void SetInteractionFlags(unsigned int);
506 vtkGetMacro(InteractionFlags, unsigned int);
507
513 void SetInteractionFlagsModifier(unsigned int);
514 vtkGetMacro(InteractionFlagsModifier, unsigned int);
515
520
521
522
524
533
536 virtual void SetSliceResolutionMode(int mode);
537 vtkGetMacro(SliceResolutionMode, int);
538
541 vtkGetMacro(SlabReconstructionEnabled, bool);
542 vtkSetMacro(SlabReconstructionEnabled, bool);
543 vtkBooleanMacro(SlabReconstructionEnabled, bool);
545
548 vtkGetMacro(SlabReconstructionType, int);
549 vtkSetMacro(SlabReconstructionType, int);
550 static const char* GetSlabReconstructionTypeAsString(int slabReconstructionType);
551 static int GetSlabReconstructionTypeFromString(const char* name);
553
556 vtkGetMacro(SlabReconstructionThickness, double);
557 vtkSetMacro(SlabReconstructionThickness, double);
559
562 vtkGetMacro(SlabReconstructionOversamplingFactor, double);
563 vtkSetMacro(SlabReconstructionOversamplingFactor, double);
565
566 virtual vtkImplicitFunction* GetImplicitFunctionWorld();
567
568protected:
573
574 vtkSmartPointer<vtkMatrix4x4> SliceToRAS;
575
576 vtkSmartPointer<vtkMatrix4x4> XYToSlice;
577 vtkSmartPointer<vtkMatrix4x4> XYToRAS;
578
579 vtkSmartPointer<vtkMatrix4x4> UVWToSlice;
580 vtkSmartPointer<vtkMatrix4x4> UVWToRAS;
581
582 typedef std::pair <std::string, vtkSmartPointer<vtkMatrix3x3> > OrientationPresetType;
583 std::vector< OrientationPresetType > OrientationMatrices;
584
586
593
594 double FieldOfView[3];
595 double XYZOrigin[3];
596 double UVWOrigin[3];
597 int Dimensions[3];
598
600 double UVWExtents[3];
601 int UVWDimensions[3];
602 int UVWMaximumDimensions[3];
603
608
609 // Hold the string returned by GetOrientationString
610 std::string OrientationString;
611
613
615
618
620 double PrescribedSliceSpacing[3];
621
623
625 unsigned int InteractionFlags;
627
629
630 std::vector< std::string > ThreeDViewIDs;
631
632 vtkSmartPointer<vtkPlane> ImplicitFunction;
633};
634
635//----------------------------------------------------------------------------
636std::vector< std::string > vtkMRMLSliceNode::GetThreeDViewIDs()const
637{
638 return this->ThreeDViewIDs;
639}
640
641#endif
Abstract MRML node to represent a view. The class holds the properties common to any view type (3D,...
Abstract Superclass for all specific types of MRML nodes.
A set of MRML Nodes that supports serialization and undo/redo.
MRML node for storing a slice through RAS space.
void SetInteracting(int)
void ResetInteractionFlagsModifier()
bool IsDisplayableInThreeDView(const char *viewNodeID) const
void ReadXMLAttributes(const char **atts) override
Set node attributes.
void SetXYZOrigin(double xyz[3])
void SetSliceToRASByNTP(double Nx, double Ny, double Nz, double Tx, double Ty, double Tz, double Px, double Py, double Pz, int Orientation)
void SetSliceOffset(double offset)
virtual const char * GetOrientationString()
Get orientation.
void SetInteractionFlags(unsigned int)
bool SetOrientationToSagittal()
void JumpSlice(double r, double a, double s)
void RotateToAxes(vtkMatrix4x4 *referenceToRAS, int sliceNormalAxisIndex=-1)
const char * GetNthThreeDViewID(unsigned int index)
bool RemoveSliceOrientationPreset(const std::string &name)
Remove an orientation preset.
void SetJumpModeToOffset()
void SetUVWExtentsAndDimensions(double extents[3], int dimensions[3])
unsigned int InteractionFlagsModifier
vtkMatrix4x4 * GetXYToSlice()
vtkMatrix4x4 * GetUVWToSlice()
static void GetSagittalSliceToRASMatrix(vtkMatrix3x3 *orientationMatrix, bool patientRightIsScreenLeft=true)
Initialize orientationMatrix as a Sagittal orientation matrix.
bool MatrixAreEqual(const vtkMatrix4x4 *m1, const vtkMatrix4x4 *m2)
helper for comparing to matrices
static void GetCoronalSliceToRASMatrix(vtkMatrix3x3 *orientationMatrix, bool patientRightIsScreenLeft=true)
Initialize orientationMatrix as a Coronal orientation matrix.
void SetDimensions(int xyz[3])
void SetSliceSpacingModeToPrescribed()
const char * GetNodeTagName() override
Get node XML tag name (like Volume, Model)
void RemoveAllThreeDViewIDs()
void JumpSliceByOffsetting(double r, double a, double s)
void SetFieldOfView(double x, double y, double z)
static const char * GetReformatOrientationName()
void RotateToVolumePlane(vtkMRMLVolumeNode *volumeNode, bool forceSlicePlaneToSingleSlice=true)
virtual void SetSliceResolutionMode(int mode)
method for setting UVW space (extents, dimensions and spacing)
static void AddDefaultSliceOrientationPresets(vtkMRMLScene *scene, bool patientRightIsScreenLeft=true)
Add default slice orientation presets to scene.
vtkMatrix4x4 * GetUVWToRAS()
vtkSmartPointer< vtkMatrix4x4 > SliceToRAS
void SetUVWOrigin(double x, double y, double z)
void JumpSliceByCentering(double r, double a, double s)
vtkMRMLSliceNode(const vtkMRMLSliceNode &)
std::vector< OrientationPresetType > OrientationMatrices
std::string GetOrientation(vtkMatrix4x4 *sliceToRAS)
Return the orientation name associated with sliceToRAS.
bool RenameSliceOrientationPreset(const std::string &name, const std::string &updatedName)
Rename an orientation preset.
virtual vtkImplicitFunction * GetImplicitFunctionWorld()
bool AddSliceOrientationPreset(const std::string &name, vtkMatrix3x3 *orientationMatrix)
Add or update an orientation preset.
void PrintSelf(ostream &os, vtkIndent indent) override
static int GetSlabReconstructionTypeFromString(const char *name)
static const char * GetSlabReconstructionTypeAsString(int slabReconstructionType)
bool SetOrientation(const char *orientation)
Set orientation.
bool SetOrientationToAxial()
Set 'standard' radiological convention views of patient space.
void SetUVWExtents(double xyz[3])
bool SetOrientationToCoronal()
void Reset(vtkMRMLNode *defaultNode) override
Reimplemented to preserve orientation and layout color when reset.
unsigned int InteractionFlags
SliceResolutionModeType
Enum to specify the method for setting UVW extents.
bool IsThreeDViewIDPresent(const char *ThreeDViewID) const
bool MatrixAreEqual(const vtkMatrix4x4 *matrix, const vtkMatrix3x3 *orientationMatrix)
void RemoveThreeDViewID(char *viewNodeID)
void JumpAllSlices(double r, double a, double s)
void SetUVWDimensions(int xyz[3])
void operator=(const vtkMRMLSliceNode &)
void SetUVWMaximumDimensions(int x, int y, int z)
vtkMRMLNode * CreateNodeInstance() override
Create instance of the default node. Like New only virtual.
void GetSliceOrientationPresetNames(vtkStringArray *presetOrientationNames)
Return all the orientation preset names.
bool SetOrientationToDefault()
void WriteXML(ostream &of, int indent) override
Write this node's information to a MRML file in XML format.
std::string GetSliceOrientationPresetName(vtkMatrix3x3 *orientationMatrix)
Return the preset name corresponding to orientationMatrix.
vtkMatrix3x3 * GetSliceOrientationPreset(const std::string &name)
Return the sliceToRAS matrix associated with name.
std::pair< std::string, vtkSmartPointer< vtkMatrix3x3 > > OrientationPresetType
vtkMRMLCopyContentMacro(vtkMRMLSliceNode)
double GetSliceOffset()
Get/Set the current distance from the origin to the slice plane.
void AddThreeDViewID(const char *viewNodeID)
int GetNumberOfThreeDViewIDs() const
vtkSmartPointer< vtkPlane > ImplicitFunction
double SlabReconstructionOversamplingFactor
virtual void SetLayoutGridColumns(int cols)
void SetSliceSpacingModeToAutomatic()
bool HasSliceOrientationPreset(const std::string &name)
Return True if an orientation preset is stored.
std::string OrientationString
void JumpSliceByOffsetting(int k, double r, double a, double s)
void SetUVWMaximumDimensions(int xyz[3])
static void JumpAllSlices(vtkMRMLScene *scene, double r, double a, double s, int jumpMode=vtkMRMLSliceNode::DefaultJumpSlice, int viewGroup=-1, vtkMRMLSliceNode *exclude=nullptr)
std::vector< std::string > GetThreeDViewIDs() const
std::string GetOrientation()
Get orientation.
void SetInteractionFlagsModifier(unsigned int)
void SetFieldOfView(double xyz[3])
double SlabReconstructionThickness
static void GetAxialSliceToRASMatrix(vtkMatrix3x3 *orientationMatrix, bool patientRightIsScreenLeft=true)
Initialize orientationMatrix as an Axial orientation matrix.
std::vector< std::string > ThreeDViewIDs
vtkSmartPointer< vtkMatrix4x4 > UVWToRAS
void SetSliceOrigin(double x, double y, double z)
virtual vtkMatrix4x4 * GetSliceToRAS()
~vtkMRMLSliceNode() override
vtkSmartPointer< vtkMatrix4x4 > UVWToSlice
virtual void SetLayoutGridRows(int rows)
void SetJumpModeToCentered()
void SetDimensions(int x, int y, int z)
int GetNumberOfSliceOrientationPresets() const
Return number of orientation presets.
vtkSmartPointer< vtkMatrix4x4 > XYToSlice
void SetUVWDimensions(int x, int y, int z)
vtkSmartPointer< vtkMatrix4x4 > XYToRAS
void SetXYZOrigin(double x, double y, double z)
vtkMatrix4x4 * GetXYToRAS()
static vtkMRMLSliceNode * New()
Instantiate a new Slice node without any orientation presets.
void SetSliceOrigin(double xyz[3])
Origin of slice in XYZ or UVW space depending on SliceResolutionMode.
void SetUVWExtents(double x, double y, double z)
void SetLayoutGrid(int rows, int columns)
void SetUVWOrigin(double xyz[3])
MRML node for representing a volume (image stack).