Slicer
4.11
Slicer is a multi-platform, free and open source software package for visualization and medical image computing
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This is the complete list of members for vtkSlicerSegmentationsModuleLogic, including all inherited members.
ApplyParentTransformToOrientedImageData(vtkMRMLTransformableNode *transformableNode, vtkOrientedImageData *orientedImageData, bool linearInterpolation=false, double backgroundColor[4]=nullptr) | vtkSlicerSegmentationsModuleLogic | static |
ApplyParentTransformToPolyData(vtkMRMLTransformableNode *transformableNode, vtkPolyData *polyData) | vtkSlicerSegmentationsModuleLogic | static |
ClearSegment(vtkMRMLSegmentationNode *segmentationNode, std::string segmentID) | vtkSlicerSegmentationsModuleLogic | static |
CollapseBinaryLabelmaps(vtkMRMLSegmentationNode *segmentationNode, bool forceToSingleLayer) | vtkSlicerSegmentationsModuleLogic | static |
Completed enum value | vtkSlicerSegmentationsModuleLogic | |
CopyOrientedImageDataToVolumeNode(vtkOrientedImageData *orientedImageData, vtkMRMLVolumeNode *volumeNode, bool shallowCopy=true, bool shiftImageDataExtentToZeroStart=true) | vtkSlicerSegmentationsModuleLogic | static |
CreateLabelmapVolumeFromOrientedImageData(vtkOrientedImageData *orientedImageData, vtkMRMLLabelMapVolumeNode *labelmapVolumeNode) | vtkSlicerSegmentationsModuleLogic | static |
CreateOrientedImageDataFromVolumeNode(vtkMRMLScalarVolumeNode *volumeNode, vtkMRMLTransformNode *outputParentTransformNode=nullptr) | vtkSlicerSegmentationsModuleLogic | static |
CreateRepresentationForOneSegment(vtkSegmentation *segmentation, std::string segmentID, std::string representationName) | vtkSlicerSegmentationsModuleLogic | static |
CreateSegmentFromLabelmapVolumeNode(vtkMRMLLabelMapVolumeNode *labelmapVolumeNode, vtkMRMLSegmentationNode *segmentationNode=nullptr) | vtkSlicerSegmentationsModuleLogic | static |
CreateSegmentFromModelNode(vtkMRMLModelNode *modelNode, vtkMRMLSegmentationNode *segmentationNode=nullptr) | vtkSlicerSegmentationsModuleLogic | static |
DoesLabelmapContainSingleLabel(vtkMRMLLabelMapVolumeNode *labelmapVolumeNode) | vtkSlicerSegmentationsModuleLogic | static |
EndModify(bool wasModifying) | vtkMRMLAbstractLogic | inlineprotected |
EnterMRMLLogicsCallback() const | vtkMRMLAbstractLogic | protectedvirtual |
EnterMRMLNodesCallback() const | vtkMRMLAbstractLogic | protectedvirtual |
EnterMRMLSceneCallback() const | vtkMRMLAbstractLogic | protectedvirtual |
ExportAllSegmentsToLabelmapNode(vtkMRMLSegmentationNode *segmentationNode, vtkMRMLLabelMapVolumeNode *labelmapNode, int extentComputationMode=vtkSegmentation::EXTENT_UNION_OF_EFFECTIVE_SEGMENTS) | vtkSlicerSegmentationsModuleLogic | static |
ExportAllSegmentsToModels(vtkMRMLSegmentationNode *segmentationNode, vtkIdType folderItemId) | vtkSlicerSegmentationsModuleLogic | static |
ExportSegmentsBinaryLabelmapRepresentationToFiles(std::string destinationFolder, vtkMRMLSegmentationNode *segmentationNode, vtkStringArray *segmentIds=nullptr, std::string extension="nrrd", bool useCompression=false, vtkMRMLVolumeNode *referenceVolumeNode=nullptr, int extentComputationMode=vtkSegmentation::EXTENT_REFERENCE_GEOMETRY, vtkMRMLColorTableNode *colorTableNode=nullptr) | vtkSlicerSegmentationsModuleLogic | static |
ExportSegmentsClosedSurfaceRepresentationToFiles(std::string destinationFolder, vtkMRMLSegmentationNode *segmentationNode, vtkStringArray *segmentIds=nullptr, std::string fileFormat="STL", bool lps=true, double sizeScale=1.0, bool merge=false) | vtkSlicerSegmentationsModuleLogic | static |
ExportSegmentsClosedSurfaceRepresentationToObjFile(std::string destinationFolder, vtkMRMLSegmentationNode *segmentationNode, std::vector< std::string > &segmentIDs, bool lps, double sizeScale) | vtkSlicerSegmentationsModuleLogic | protectedstatic |
ExportSegmentsClosedSurfaceRepresentationToStlFiles(std::string destinationFolder, vtkMRMLSegmentationNode *segmentationNode, std::vector< std::string > &segmentIDs, bool lps, double sizeScale, bool merge) | vtkSlicerSegmentationsModuleLogic | protectedstatic |
ExportSegmentsToLabelmapNode(vtkMRMLSegmentationNode *segmentationNode, std::vector< std::string > &segmentIDs, vtkMRMLLabelMapVolumeNode *labelmapNode, vtkMRMLVolumeNode *referenceVolumeNode=nullptr, int extentComputationMode=vtkSegmentation::EXTENT_UNION_OF_EFFECTIVE_SEGMENTS, vtkMRMLColorTableNode *colorTableNode=nullptr) | vtkSlicerSegmentationsModuleLogic | static |
ExportSegmentsToLabelmapNode(vtkMRMLSegmentationNode *segmentationNode, vtkStringArray *segmentIDs, vtkMRMLLabelMapVolumeNode *labelmapNode, vtkMRMLVolumeNode *referenceVolumeNode=nullptr, int extentComputationMode=vtkSegmentation::EXTENT_UNION_OF_EFFECTIVE_SEGMENTS, vtkMRMLColorTableNode *colorTableNode=nullptr) | vtkSlicerSegmentationsModuleLogic | static |
ExportSegmentsToModels(vtkMRMLSegmentationNode *segmentationNode, std::vector< std::string > &segmentIDs, vtkIdType folderItemId) | vtkSlicerSegmentationsModuleLogic | static |
ExportSegmentsToModels(vtkMRMLSegmentationNode *segmentationNode, vtkStringArray *segmentIds, vtkIdType folderItemId) | vtkSlicerSegmentationsModuleLogic | static |
ExportSegmentToRepresentationNode(vtkSegment *segment, vtkMRMLNode *representationNode) | vtkSlicerSegmentationsModuleLogic | static |
ExportVisibleSegmentsToLabelmapNode(vtkMRMLSegmentationNode *segmentationNode, vtkMRMLLabelMapVolumeNode *labelmapNode, vtkMRMLVolumeNode *referenceVolumeNode=nullptr, int extentComputationMode=vtkSegmentation::EXTENT_UNION_OF_EFFECTIVE_SEGMENTS) | vtkSlicerSegmentationsModuleLogic | static |
ExportVisibleSegmentsToModels(vtkMRMLSegmentationNode *segmentationNode, vtkIdType folderItemId) | vtkSlicerSegmentationsModuleLogic | static |
Flagged enum value | vtkSlicerSegmentationsModuleLogic | |
GenerateMergedLabelmapInReferenceGeometry(vtkMRMLSegmentationNode *segmentationNode, vtkMRMLVolumeNode *referenceVolumeNode, vtkStringArray *segmentIDs, int extentComputationMode, vtkOrientedImageData *mergedLabelmap_Reference) | vtkSlicerSegmentationsModuleLogic | static |
GetAllLabelValues(vtkIntArray *labels, vtkImageData *labelmap) | vtkSlicerSegmentationsModuleLogic | static |
GetApplicationLogic() | vtkSlicerModuleLogic | virtual |
GetClassName() | vtkSlicerSegmentationsModuleLogic | virtual |
GetDefaultSegmentationNode() | vtkSlicerSegmentationsModuleLogic | |
GetDefaultSurfaceSmoothingEnabled() | vtkSlicerSegmentationsModuleLogic | |
GetDisableModifiedEvent() const | vtkMRMLAbstractLogic | protected |
GetInMRMLLogicsCallbackFlag() const | vtkMRMLAbstractLogic | protected |
GetInMRMLNodesCallbackFlag() const | vtkMRMLAbstractLogic | protected |
GetInMRMLSceneCallbackFlag() const | vtkMRMLAbstractLogic | protected |
GetLabelValuesFromColorNode(vtkMRMLSegmentationNode *segmentationNode, vtkMRMLColorTableNode *colorTableNode, vtkStringArray *segmentIds, vtkIntArray *labelValues) | vtkSlicerSegmentationsModuleLogic | static |
GetModuleLogic(const char *moduleName) | vtkSlicerModuleLogic | virtual |
GetModuleShareDirectory() const | vtkSlicerModuleLogic | |
GetMRMLApplicationLogic() const | vtkMRMLAbstractLogic | virtual |
GetMRMLLogicsCallbackCommand() | vtkMRMLAbstractLogic | protected |
GetMRMLLogicsObserverManager() const | vtkMRMLAbstractLogic | protected |
GetMRMLNodesCallbackCommand() | vtkMRMLAbstractLogic | protected |
GetMRMLNodesObserverManager() const | vtkMRMLAbstractLogic | protected |
GetMRMLScene() const | vtkMRMLAbstractLogic | |
GetMRMLSceneCallbackCommand() | vtkMRMLAbstractLogic | protected |
GetMRMLSceneObserverManager() const | vtkMRMLAbstractLogic | protected |
GetPendingModifiedEventCount() const | vtkMRMLAbstractLogic | protected |
GetProcessingMRMLSceneEvent() const | vtkMRMLAbstractLogic | protected |
GetSafeFileName(std::string originalName) | vtkSlicerSegmentationsModuleLogic | protectedstatic |
GetSegmentationNodeForSegment(vtkMRMLScene *scene, vtkSegment *segment, std::string &segmentId) | vtkSlicerSegmentationsModuleLogic | static |
GetSegmentationNodeForSegmentation(vtkMRMLScene *scene, vtkSegmentation *segmentation) | vtkSlicerSegmentationsModuleLogic | static |
GetSegmentationNodeForSegmentSubjectHierarchyItem(vtkIdType segmentShItemID, vtkMRMLScene *scene) | vtkSlicerSegmentationsModuleLogic | static |
GetSegmentBinaryLabelmapRepresentation(vtkMRMLSegmentationNode *segmentationNode, std::string segmentID, vtkOrientedImageData *imageData, bool applyParentTransform=true) | vtkSlicerSegmentationsModuleLogic | static |
GetSegmentClosedSurfaceRepresentation(vtkMRMLSegmentationNode *segmentationNode, std::string segmentID, vtkPolyData *polyData, bool applyParentTransform=true) | vtkSlicerSegmentationsModuleLogic | static |
GetSegmentForSegmentSubjectHierarchyItem(vtkIdType segmentShItemID, vtkMRMLScene *scene) | vtkSlicerSegmentationsModuleLogic | static |
GetSegmentRepresentation(vtkMRMLSegmentationNode *segmentationNode, std::string segmentID, std::string representationName, vtkDataObject *segmentRepresentation, bool applyParentTransform=true) | vtkSlicerSegmentationsModuleLogic | static |
GetSegmentStatus(vtkSegment *segment) | vtkSlicerSegmentationsModuleLogic | static |
GetSegmentStatusAsHumanReadableString(int segmentStatus) | vtkSlicerSegmentationsModuleLogic | static |
GetSegmentStatusAsMachineReadableString(int segmentStatus) | vtkSlicerSegmentationsModuleLogic | static |
GetSegmentStatusFromMachineReadableString(std::string statusString) | vtkSlicerSegmentationsModuleLogic | static |
GetSharedSegmentIDsInMask(vtkMRMLSegmentationNode *segmentationNode, std::string sharedSegmentID, vtkOrientedImageData *mask, const int extent[6], std::vector< std::string > &segmentIDs, int maskThreshold=0.0, bool includeInputSharedSegmentID=false) | vtkSlicerSegmentationsModuleLogic | static |
GetStatusTagName() | vtkSlicerSegmentationsModuleLogic | static |
GetTransformBetweenRepresentationAndSegmentation(vtkMRMLTransformableNode *representationNode, vtkMRMLSegmentationNode *segmentationNode, vtkGeneralTransform *representationToSegmentationTransform) | vtkSlicerSegmentationsModuleLogic | static |
ImportLabelmapToSegmentationNode(vtkMRMLLabelMapVolumeNode *labelmapNode, vtkMRMLSegmentationNode *segmentationNode, std::string insertBeforeSegmentId="") | vtkSlicerSegmentationsModuleLogic | static |
ImportLabelmapToSegmentationNode(vtkOrientedImageData *labelmapImage, vtkMRMLSegmentationNode *segmentationNode, std::string baseSegmentName="", std::string insertBeforeSegmentId="") | vtkSlicerSegmentationsModuleLogic | static |
ImportLabelmapToSegmentationNode(vtkMRMLLabelMapVolumeNode *labelmapNode, vtkMRMLSegmentationNode *segmentationNode, vtkStringArray *updatedSegmentIDs) | vtkSlicerSegmentationsModuleLogic | static |
ImportLabelmapToSegmentationNode(vtkOrientedImageData *labelmapImage, vtkMRMLSegmentationNode *segmentationNode, vtkStringArray *updatedSegmentIDs, vtkGeneralTransform *labelmapToSegmentationTransform=nullptr) | vtkSlicerSegmentationsModuleLogic | static |
ImportLabelmapToSegmentationNodeWithTerminology(vtkMRMLLabelMapVolumeNode *labelmapNode, vtkMRMLSegmentationNode *segmentationNode, std::string terminologyContextName, std::string insertBeforeSegmentId="") | vtkSlicerSegmentationsModuleLogic | |
ImportModelsToSegmentationNode(vtkIdType folderItemId, vtkMRMLSegmentationNode *segmentationNode, std::string insertBeforeSegmentId="") | vtkSlicerSegmentationsModuleLogic | static |
ImportModelToSegmentationNode(vtkMRMLModelNode *modelNode, vtkMRMLSegmentationNode *segmentationNode, std::string insertBeforeSegmentId="") | vtkSlicerSegmentationsModuleLogic | static |
InProgress enum value | vtkSlicerSegmentationsModuleLogic | |
InvokePendingModifiedEvent() | vtkMRMLAbstractLogic | protected |
IsA(const char *type) | vtkSlicerSegmentationsModuleLogic | virtual |
IsTypeOf(const char *type) | vtkSlicerSegmentationsModuleLogic | static |
LastStatus enum value | vtkSlicerSegmentationsModuleLogic | |
LoadSegmentationFromFile(const char *filename, bool autoOpacities=true, const char *nodeName=nullptr, vtkMRMLColorTableNode *colorTableNode=nullptr) | vtkSlicerSegmentationsModuleLogic | |
MODE_MERGE_MASK enum value | vtkSlicerSegmentationsModuleLogic | |
MODE_MERGE_MAX enum value | vtkSlicerSegmentationsModuleLogic | |
MODE_MERGE_MIN enum value | vtkSlicerSegmentationsModuleLogic | |
MODE_REPLACE enum value | vtkSlicerSegmentationsModuleLogic | |
Modified() override | vtkMRMLAbstractLogic | protected |
MRMLLogicsCallback(vtkObject *caller, unsigned long eid, void *clientData, void *callData) | vtkMRMLAbstractLogic | protectedstatic |
MRMLNodesCallback(vtkObject *caller, unsigned long eid, void *clientData, void *callData) | vtkMRMLAbstractLogic | protectedstatic |
MRMLSceneCallback(vtkObject *caller, unsigned long eid, void *clientData, void *callData) | vtkMRMLAbstractLogic | protectedstatic |
New() | vtkSlicerSegmentationsModuleLogic | static |
NotStarted enum value | vtkSlicerSegmentationsModuleLogic | |
ObserveMRMLScene() | vtkMRMLAbstractLogic | protectedvirtual |
OnMRMLNodeModified(vtkMRMLNode *) | vtkMRMLAbstractLogic | inlineprotectedvirtual |
OnMRMLSceneEndBatchProcess() | vtkMRMLAbstractLogic | protectedvirtual |
OnMRMLSceneEndClose() | vtkMRMLAbstractLogic | inlineprotectedvirtual |
OnMRMLSceneEndImport() | vtkMRMLAbstractLogic | inlineprotectedvirtual |
OnMRMLSceneEndRestore() | vtkMRMLAbstractLogic | inlineprotectedvirtual |
OnMRMLSceneNew() | vtkMRMLAbstractLogic | inlineprotectedvirtual |
OnMRMLSceneNodeAdded(vtkMRMLNode *node) override | vtkSlicerSegmentationsModuleLogic | protectedvirtual |
OnMRMLSceneNodeRemoved(vtkMRMLNode *) | vtkMRMLAbstractLogic | inlineprotectedvirtual |
OnMRMLSceneStartBatchProcess() | vtkMRMLAbstractLogic | inlineprotectedvirtual |
OnMRMLSceneStartClose() | vtkMRMLAbstractLogic | inlineprotectedvirtual |
OnMRMLSceneStartImport() | vtkMRMLAbstractLogic | inlineprotectedvirtual |
OnMRMLSceneStartRestore() | vtkMRMLAbstractLogic | inlineprotectedvirtual |
OnSubjectHierarchyUIDAdded(vtkObject *caller, unsigned long eid, void *clientData, void *callData) | vtkSlicerSegmentationsModuleLogic | protectedstatic |
PrintSelf(ostream &os, vtkIndent indent) override | vtkSlicerSegmentationsModuleLogic | |
ProcessMRMLLogicsEvents(vtkObject *caller, unsigned long event, void *callData) | vtkMRMLAbstractLogic | protectedvirtual |
ProcessMRMLNodesEvents(vtkObject *caller, unsigned long event, void *callData) | vtkMRMLAbstractLogic | protectedvirtual |
ProcessMRMLSceneEvents(vtkObject *caller, unsigned long event, void *callData) | vtkMRMLAbstractLogic | protectedvirtual |
ReconvertAllRepresentations(vtkMRMLSegmentationNode *segmentationNode, const std::vector< std::string > &segmentIDs={}) | vtkSlicerSegmentationsModuleLogic | static |
RegisterNodes() override | vtkSlicerSegmentationsModuleLogic | protectedvirtual |
SafeDownCast(vtkObject *o) | vtkSlicerSegmentationsModuleLogic | static |
SegmentStatus enum name | vtkSlicerSegmentationsModuleLogic | |
SetAndObserveMRMLSceneEventsInternal(vtkMRMLScene *newScene, vtkIntArray *events, vtkFloatArray *priorities=nullptr) | vtkMRMLAbstractLogic | protected |
SetBinaryLabelmapToSegment(vtkOrientedImageData *labelmap, vtkMRMLSegmentationNode *segmentationNode, std::string segmentID, int mergeMode=MODE_REPLACE, const int extent[6]=nullptr, bool minimumOfAllSegments=false, std::vector< std::string > segmentIdsToOverwrite={}) | vtkSlicerSegmentationsModuleLogic | static |
SetDefaultSurfaceSmoothingEnabled(bool enabled) | vtkSlicerSegmentationsModuleLogic | |
SetDisableModifiedEvent(bool onOff) | vtkMRMLAbstractLogic | protected |
SetInMRMLLogicsCallbackFlag(int flag) | vtkMRMLAbstractLogic | protected |
SetInMRMLNodesCallbackFlag(int flag) | vtkMRMLAbstractLogic | protected |
SetInMRMLSceneCallbackFlag(int flag) | vtkMRMLAbstractLogic | protected |
SetModuleShareDirectory(const std::string &shareDirectory) | vtkSlicerModuleLogic | |
SetMRMLApplicationLogic(vtkMRMLApplicationLogic *logic) | vtkMRMLAbstractLogic | virtual |
SetMRMLScene(vtkMRMLScene *newScene) | vtkMRMLAbstractLogic | |
SetMRMLSceneInternal(vtkMRMLScene *newScene) override | vtkSlicerSegmentationsModuleLogic | protectedvirtual |
SetProcessingMRMLSceneEvent(int event) | vtkMRMLAbstractLogic | protected |
SetSegmentStatus(vtkSegment *segment, int status) | vtkSlicerSegmentationsModuleLogic | static |
SetTerminologyToSegmentationFromLabelmapNode(vtkMRMLSegmentationNode *segmentationNode, vtkMRMLLabelMapVolumeNode *labelmapNode, std::string terminologyContextName) | vtkSlicerSegmentationsModuleLogic | |
StartModify() | vtkMRMLAbstractLogic | inlineprotected |
SubjectHierarchyUIDCallbackCommand | vtkSlicerSegmentationsModuleLogic | protected |
Superclass typedef | vtkSlicerSegmentationsModuleLogic | |
TaskFunctionPointer typedef | vtkMRMLAbstractLogic | |
UnobserveMRMLScene() | vtkMRMLAbstractLogic | protectedvirtual |
UpdateFromMRMLScene() | vtkMRMLAbstractLogic | protectedvirtual |
vtkMRMLAbstractLogic() | vtkMRMLAbstractLogic | protected |
vtkSlicerModuleLogic() | vtkSlicerModuleLogic | protected |
vtkSlicerSegmentationsModuleLogic() | vtkSlicerSegmentationsModuleLogic | protected |
~vtkMRMLAbstractLogic() override | vtkMRMLAbstractLogic | protected |
~vtkSlicerModuleLogic() override | vtkSlicerModuleLogic | protected |
~vtkSlicerSegmentationsModuleLogic() override | vtkSlicerSegmentationsModuleLogic | protected |