dtitypes.h

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// Copied from dtiprocess
// available there: https://www.nitrc.org/projects/dtiprocess/
/*=========================================================================
 
  Program:   NeuroLib (DTI command line tools)
  Language:  C++
  Date:      $Date: 2010/03/09 18:01:02 $
  Version:   $Revision: 1.2 $
  Author:    Casey Goodlett (gcasey@sci.utah.edu)
 
  Copyright (c)  Casey Goodlett. All rights reserved.
  See NeuroLibCopyright.txt or https://www.ia.unc.edu/dev/Copyright.htm for details.
 
     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notices for more information.
 
=========================================================================*/
 
#ifndef DTITYPES_H
#define DTITYPES_H
 
// ITK Data types
#include <itkImage.h>
#include <itkVectorContainer.h>
#include <itkVector.h>
#include <itkCovariantVector.h>
#include <itkDiffusionTensor3D.h>
#include <itkAffineTransform.h>
#include <itkDTITubeSpatialObject.h>
#include <itkGroupSpatialObject.h>
#include <itkRGBPixel.h>
#include <itkVectorImage.h>
 
// VNL Includes
#include <vnl/vnl_matrix.h>
#include <vnl/vnl_vector_fixed.h>
 
// Define necessary types for images
typedef double RealType;
typedef double TransformRealType;
typedef unsigned char LabelType;
const unsigned int DIM = 3;
 
typedef unsigned short ScalarPixelType;
typedef itk::DiffusionTensor3D<double> TensorPixelType;
typedef itk::Vector<double, 3> DeformationPixelType;
typedef itk::CovariantVector<double, 3> GradientPixelType;
 
typedef itk::VectorImage<ScalarPixelType, DIM> VectorImageType;
typedef itk::Image<TensorPixelType, DIM> TensorImageType;
 
typedef itk::Image<DeformationPixelType, DIM> DeformationImageType;
typedef itk::Image<GradientPixelType, DIM> GradientImageType;
 
typedef itk::Image<RealType, DIM> RealImageType;
typedef itk::Image<ScalarPixelType, DIM> IntImageType;
typedef itk::Image<LabelType, DIM> LabelImageType;
typedef itk::Image<itk::RGBPixel<unsigned char>, 3> RGBImageType;
 
typedef TensorImageType::SizeType ImageSizeType;
typedef TensorImageType::SpacingType ImageSpacingType;
 
typedef itk::AffineTransform<TransformRealType, 3> AffineTransformType;
 
typedef vnl_vector_fixed<double, 3> GradientType;
typedef itk::VectorContainer<unsigned int, GradientType> GradientListType;
 
// enum InterpolationType {NearestNeighbor, Linear, Cubic};
// enum TensorReorientationType {FiniteStrain, PreservationPrincipalDirection};
 
// enum EigenValueIndex {Lambda1 = 0, Lambda2, Lambda3};
 
// typedef itk::DTITubeSpatialObject<3> DTITubeType;
// typedef DTITubeType::TubePointType DTIPointType;
// typedef DTITubeType::PointListType DTIPointListType;
 
// typedef itk::GroupSpatialObject<3> GroupType;
// typedef GroupType::ChildrenListType ChildrenListType;
 
#endif